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Exam 1: Diversity (Systematics)
Taxonomy and Phylogeny
25
Biology
Undergraduate 1
02/16/2013

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Term
Analogy
Definition
A similarity between organisms due to convergent evolution; not due to a common ancestor.
Term
Apomorphy
Definition
Derived characteristics that developed in a clade (hair); analogous.
Term
Synapomorphy
Definition
Shared derived characteristics (at least two clades) with the evolutionary novelty specific to a clade (amniotic egg); analogous.
Term
Symplesiomorphy
Definition
Ancestral traits, shared primitive characteristics; found in multiple clades (vertebral column).
Term
Archaea
Definition
4 or more clades; many intermediate characteristics between prokaryotes and eukaryotes; different structure than bacteria; some unique characteristics; inhabit extreme (halo- salt and methano- methane philes) environments; very small and plentiful in soil and aquatic environments.
Term
Bacteria
Definition
9 clades; Bacteria include purple sulfur and green sulfur; Cyanobacteria have chlorophyll a, perform some nitrogen fixation, and share metabolic pathways with plants and algae; Chemosynthetic bacteria are autotrophs that do not rely on solar energy.
Term
Binomial nomenclature
Definition
Capitalize Genus, lowercase species
Term
Carolus Linnaeus
Definition
Laid the foundations for binomial nomenclature; based largely on plant structure and sexual organization.
Term
Clade
Definition
A group of species that includes an ancetral species and all its descendents.
Term
Cladistics
Definition
The study of clades, taxa, and the evolutionary traits that can be derived from them.
Term
Domain system
Definition
At first there were two kingdoms: plants and animals; then came five kingdoms of Monera (prokaryotes), Protista (unicellular organisms), Plantae, Fungi, and Animalia: however, some prokaryotes differed from each other more than animals; this led to the widely-accepted three-domain system of Archaea, Bacteria, and Eukarya, with protists put in each one. There are also six kingdoms: Animalia, Plantae, Fungi, Protista, Archaea, and Bacteria.
Term
Eukarya
Definition
Contains cells that have membrane-bound organelles, a nucleus, etc.
Term
Homology
Definition
A similarity between organisms due to a common ancestor; the opposite of analogy.
Term
Horizontal gene transfer
Definition
The transfer of prokaryotic DNA between species; mostly limited to and between Archaea and Bacteria. These lead to Eukaryotes and endosymbiosis.
Term
Maximum likelihood
Definition
Uses statistical data to determine which are the most likely to evolve and in which order. Takes development of novelties into consideration.
Term
Maximum parsimony (Occam's Razor)
Definition
Non-statistical method that uses the simplest explanation that is consistent with data and requires the least amount of evolutionary events to create a clade.
Term
Monophyletic
Definition
An ancestral species and all of its descendants within a clade.
Term
Outgroup comparison
Definition
When creating a clade, create an outgroup that differs in traits from the group being examined.
Term
Paraphyletic
Definition
Includes a common ancestor but not the entire array of descendents from it.
Term
Polyphyletic
Definition
Includes a group as well as the outgroup; any common ancestor is not included.
Term
Phylogenetics
Definition
A study of pictorial reconstructions of evolutionary history. Based on known data and which are likely to be most closely related. Uses paleontology, embryonic development, anatomy, gene sequencing.
Term
Systematics
Definition
A branch of biology that deals with discovering how species are related to each other.
Term
Taxonomy
Definition
A branch of biology dealing with the naming and classification of organisms.
Term
Ultrametric tree
Definition
A tree with equal root-to-tip paths for all lineages; trees can reflect an amount of change or an amount of time passing.
Term
Classification
Definition
Domain Kingdom Phylum/Division Class Order Family Genera species (Do Kings Play Chess On Fine Grain Sand?)
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