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an agent intended for use in diagnosis, mitigation, treatment, cure, prevention of disease in humans or animals |
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enables use in conditions involving every body organ, tissue and cell |
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desirable pharmacological action few to no side effects reaches intended location in right concentration at right time remains at site of action for necessary period of time rapidly and completely removed from body when no longer needed |
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mostly from plants in terrestrial environments |
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Ebers Papyrus = rx for >700 remides (found in 1870's) |
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earliest extant evidence of nascent herbalism 202 BCE, 247 substances used for many different maladies |
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Hippocrates "father of Medicine" 460-377 BCE |
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First U.S. Pharmacopeia, revised ever 5 years (now constantly updated) |
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"All substances are poisonous. There are none that are nonpoisonous. Simply the dose makes the poison." Father of toxicology |
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rapidly absorbed from stomach and proximal small intestine
rate of absorption dependent upon factors such as stomach content, gastric emptying times, tablet disintegration rates and gastric pH
absorption is slow from GI in cattle but apprx. 70% of oral dose will be absorbed |
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a measure of the ability of an atom to attract electrons. Electronegativity increases from left to right and from bottom to top on the periodic table |
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suffix "ane" gen'l formula C(n)H(2n+2) simplest CH4 |
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1. longest chain 2. # so substituents have lowest number 3. substituents named alphabetically (ending "yl", di- tri-, etc for subs that appear more than once) 4. suffix of parent chain "and"
5. cyclic alkanes; prefix "cyclo" |
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chemical/physical properties of alkanes |
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C<5 gases, 5-17 liquids, >17 solids b.p., m.p., viscosity increase with chain length non-polar soluble, water insoluble flammable, react w/ oxidizing agents (like O2) to make CO2 and H2O metabolically stable |
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suffix "ene" CnH2n simplest C2H4 naming: suffix "ene", if polyunsaturated "diene, triene etc" |
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oxidation (add alcohol groups), reduction (add H) |
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b.p.,m.p., viscosity increase with chain length nonpolar soluble, water insoluble flammable react w/ oxidizing and reducing agents to form corresponding saturated compound undergo addition runs and can form peroxides w/ O2 metabolically stable |
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suffix "yne" = triple bond C(2n)H(2n-2) simplest C2H2 |
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same as alkenes terminal H slightly acidic O/R rxns same as alkenes |
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same as alkenes terminal H slightly acidic O/R rxns same as alkenes |
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Huckel Rule for Aromaticity |
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4n+2 pi electrons, where n is number of rings
in cyclic conjugated polyenes |
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double bonds are disregarded in aromatic ring parent Benzyl as substituent = "phenyl" |
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double bonds are disregarded in aromatic ring parent Benzyl as substituent = "phenyl" |
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relavant reactions of aromatics |
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easily oxidated (hydroxylation, epoxy intermediate) |
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less prone to rxns that affect alkenes NOT easily peroxidized, but undergo electrophilic runs b/c have rich electron cloud undergo hydroxylation hydroxylation increases water solubility = rapid elimination hydroxylation also concern b/c of epoxy intermediate may is implicated in cancer |
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prefixes "fluoro, chloro, bromo, iodo" |
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low b.p., b.p. much higher than equivalent hydrocarbons water insoluble used as polar solvents increased lipophilicity more halogens = less flammable stability + lipophilicity = toxic hazard for animals prolonged 1/2-life = systematically toxic implicated in cancer some (dichoromethane, chloroform) react with O2 to form phosgene (very reactive and toxic) : can be destroyed with ethanol |
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NOT oxidation state given by # of bonds from carbon to heteroatoms heteroatoms = atoms NOT C or H |
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suffix "ol" replacing "e" in ane/ene if substituent "hydroxy" |
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primary,secondary,tertiary alcohol/thiols |
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number of carbons attached to C containing the hydroxyl group |
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significantly higer b.p. (b/c H-bonds) good H-bond acceptor/donor higher solubility (5-6 C's) H very slightly acidic (very strong bases, not biologically relevant) |
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relatively stable readily metabolized via oxidases (oxidation) coupling rxns w/ glucoronic/sulphuric acid: conjugates increase solubility |
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more acidic (better nucleophiles) than comparable alcohols is lipophilic groups = less water soluble than alcohols form weaker H-bonds S-H bond oxidized over C-H bond (b/c S-H weaker) |
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primary alcohol oxidized to aldehyde then goes to carboxylic acid secondary alcohol oxidized into ketone tertiary alcohol no rxn primary thiol oxidized into dimer w/ disulfide bridge |
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OH/SH attached to aromatic ring naming: ex. hydroxybenzene, benzenethiol |
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phenol/thiophenol properties |
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more acidic than comparable alcohol/thiol (b/c stable after give up proton = phenolate/thiophenolate via resonance and dipolar interactions) more water soluble (increases with # of OH groups and decreases with halogens) higher b.p. react with strong bases to form very soluble compounds react with O2 to give quinones (must store carefully) metabolic reactions: hydroxylation, conjugation, methylation (reduces solubility) |
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ether substituent "alkoxy" (methoxy etc.) thioether substituent "alkylthio" (methylthio etc) ex. HC-CH-O-CH-CH ethoxyethane |
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significantly lower b.p. (than comparable alcohols) low water solubility for C<5, C>5 insoluble (no H = no H-Bonding) form peroxides in air (irritant, can be explosive in high conc.) R-O-O-R aromatic ethers can be dealkylated to produce alcohol and aldehyde thioether rxn: easily oxidized to sulfoxide (R-SO-R), oxidized further to sulfone (R-SO2-R) inert non-polar solvents |
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R-COH suffix "al" replaces "e" of ane/ene "dial, trial" etc if more than one if attached to cyclic suffix "carbaldehyde" if not highest priority prefix "oxo" preceded by number |
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R-CO-R suffix "one" replaces "e" |
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aldehyde/ketone properties |
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C=O makes permanent dipole, increases solubility O is good H-bond acceptor TAUTOMERIC! carbonyls; "keto" to "enol" |
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aldehyde/ketone reactivity |
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aldehydes: oxidized (by air) to carboxyl polymerized (R-CH=O <> -(R-CH-O-CHR-O)- ketone: no oxidation, reduced to alcohol
important functional groups in sugars |
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prefix "amino" w/ number of position if secondary/tertiary smaller alkyl as prefix "N-alkyl" group quaternary = alkyl ammonium compund (group is always charged) |
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- lower b.p. (b/c NH not as polarized as OH = not as good H-bond donors)
- high solubility; solubilize 5-6 Cs (b/c lone pair on N = excellent H-bond acceptor)
- basic (b/c lone pair); can be affected by steric effect (30 is less basic than 20), also groups that ↑ electron density of N ↑ basicity (and vice versa) > both balance so 20 is more basic than 10 and 30
- aryl amines less basic than cycloalkyl b/c resonance
- basicity allows to make SALT with acid (charged = soluble) "aminium salts"
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Definition
- naming: suffix "oic acid" replaces "e" from ane/ene
PROPERTIES
- much higher b.p. (b/c strong intermolecular H-bonding)
- OH group is much more polarized (than alcohol=better H-bond acceptor)
- ↑ water solubility (b/c H-bonding and ionization of O-H)
- H is acidic b/c can delocalize neg. charge through resonance (not strong acid for same reason)
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carboxylic acid reactivity |
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- reduction: to aldehyde
- with alcohol in acidic conditions : ester (OH replaced by OR from alcohol)
- with amine in acidic conditions : amide (OH replaced with amine)
- conjugation w/ glucuronic acid
- forms amide bond w/ glycine and glutamine
- beta-oxidation (metabolism of fatty acids)
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Definition
- naming: alcohol hydrocarbon = substituent w/ "yl" suffix, space, then acid name "ic" replaced by "oate"
PROPERTIES
- non-polar (eventhough made of 2 polar groups)
- ↓ b.p. (b/c lose H-bonding; from OH to OR)
- ↓ solubility (b/c no longer H-bond donor)
- neutral
- unstable drugs, but good prodrugs (active form is acid or alcohol)
- very sweet smelling = use in food/cosmetic industry
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- oxidized in basic cond: OH replaces OR
- reduced in acidic conditions: OH replaces OR
- esterase: break into carboxylic acid and alcohol (metabolism)
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- naming: amine hydrocarbon named 1st suffix "yl", space, acid name "oic" replaced wiht "amide"
- primary, secondary, tertiary = # C's attached
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- higer b.p. (than ester) b/c can still H-bond
- ↑ H-bonding b/c resonance
- N carry + charge = 3° amide form dipole-dipole = keep ↑ b.p. even though no H-bonding
- ↑ water solubility (b/c dipoles from resonance)
- lone pair not available for basicity b/c used in resonance = neutral
- stable (resist hydrolysis)
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- metabolized by amidase to give carboxilic acid and amine
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Lactones and Lactams
[image] |
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- cyclic esters and amides
- same properties as linear forms
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- diester derivative of carbonic acid
[image]
- naming: determine the constituting alcohols names. 2 named as substitutents ending "yl" based on priority/alphabitical. 3. add "carbonate" at end
- properties parallel ester
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Definition
- ester-amide derivative of carbonic acid
[image]
- naming: 1. determine names of alcohol and amine. 2 alcohol named as substituent ending "yl" followed by amine parent ending "yl". 3 completed by adding word "carbamate".
- properties are combo of esters and amides
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Definition
- diamide derivatives of carbonic acid
[image]
- naming: 1 determine names of constituting amines. 2 name as substituents suffix "yl" based on priority/alphabetical. 3 follow by "urea"
- properties same as amides
- reactivity: more stable to hydrolysis
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naming: prefixes O = oxo, N= Azo, S= Thio ; priority O > S > N |
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Definition
- O can be VERY basic (b/c electrons in sp2 orbital)
- typically unreactive
- behaves like benzene; will undergo hydroxylation
- THF (tetrahydrofuran) is highly soluble in water, will undergo peroxidation in air
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Thiole (Thiolphene)
[image] |
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- relatively stable
- Tetrahydrothiophene unilke ethers is fairly stable, also less water soluble
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- aromatic
- week base = neutral (pyrrolidine is basic and fairly water soluble)
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5 membered Heterocycles and aromaticity |
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Definition
- O is part of ring = 2 extra pi electrons
- N is part of ring = 2 extra pi electrons
- aka ring normaly not aromatic can be (Huckel rule 4n+2 pi electrons)
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3 and 4 membered heterocycles |
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oxirane (epoxides) and Aziridine
[image]
- reactions: oxiranes freely open (catalyzed by acid or base)
- azetidine, add =O to corner get beta-Lactam; opened by hydrolysis or beta-lactamase
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- basic (eventhough aromatic) b/c electrons on N not involved in resonancce
- isomer of isozazole
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- resonance stabilizes
- is aromatic w/ one basic N (can't tell which N b/c resonance)
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6 membered heterocyles
with N and O |
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Definition
- slightly basic b/c lone pair from NH available to accept H
- if more O's than more electron withdrawling = NH more willing to give up H than accept one
- Keto-Enol Tautomerism; keto = weak acid, enol = weak acid and base
- saturated rings: similar properties to cyclic amine/ethers and cooresponding 2° amines and ethers
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purine dervatives (adenine, guanine) |
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Definition
- 6 + 5 membered N heterocycles w/o benzene
- intramolecular interactions and Tautomerism(id guanine is keto form cannot have intramolecular bonds)
- intramolecular bonds change properties
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6 + 6 bicyclic heterocyclic rings |
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Definition
aromatic, weakly basic N, not very water soluble |
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7 and 8 membered heterocycle rings |
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Definition
with N are basic and behave like alkyl amines
important in medicinal chemistry |
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6 + 7 bicyclic heterocyclic ring |
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Definition
N at positin 4 weakly basic and can form salts |
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not mirror images (must have more than one chiral center) |
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mirror images of each other |
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Definition
1. Acids
2. Anhydrides
3. Esters
4. Acid halides
5. Amides
6. Hydrazides
7. Imides
8. Nitriles
9. Aldehydes, followed by thioaldehydes
10. Ketones
11. Alcohols and Phenols
12. Hydroperoxides
13. Amines
14. Imines
15. Hydrazines, phosphanes
16. Ethers
17. Peroxides
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