Term
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Definition
Group 1
RedOx rxns (involves transfer of e-, H+, H-)
usually use coenzymes like NAD+, NADP+, FAD, coenzyme Q, or O2 |
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Definition
Group 2
Transfer chemical group from donor to acceptor |
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Definition
Group 3
Hydrolytic cleavage of covalent bonds |
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Definition
Group 4
Non-hydrolytic cleavage of covalent bonds |
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Definition
Group 5
Molecular rearrangement w/i a molecule w/o change in formula |
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Definition
Group 6
Formation of covalent bonds between carbon and other atoms |
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Term
What are the non-protein components of enzymes? |
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Definition
- prosthetic groups
- coenzymes
- cofactors
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Term
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Definition
groups tightly bound to enzyme that cannot be separated without loss of fxn |
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Term
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Definition
- Apoenzyme is an enzyme that is missing its prosthetic group
- Holoenzyme is enzyme with prosthetic group
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Term
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Definition
Enzyme with metal ion as prosthetic group |
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Term
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Definition
- loosely bound, may or may not separate
- help with transfer of fxnl group from one compound to another
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Term
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Definition
- cofactor is not attached to enzyme, but is necessary for maximal activity (enzyme can still fxn w/o it)
- not necessarily specific to just one enzyme or substrate
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Term
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Definition
enzyme with a metal ion as a cofactor |
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Term
How does an enzyme affect the concentrations of product and substrate at equilibrium? |
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Definition
It doesn't... the enzyme just makes the rxn reach equilibrium much faster |
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Term
What is the effect of an enzyme on ΔG for a rxn? ΔG*? |
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Definition
No effect on ΔG - still same free energy difference b/w substrate and product
Decreases the activation energy ΔG* between substrate and transition state |
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Term
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Definition
- small portion of total enzyme
- 3-D: active site AA's brought together by the structure, are not sequential in primary structure
- substrates are weakly bound to A.S. in geometry resembling the transition state and the enzyme provides groups that enhance probability of the transition state occuring
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Term
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Definition
enzyme has binding or recognition sites which the substrate binds to, causing conformational change to fit the substrate
("hand in glove" theory) |
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Term
What are the four factors that affect enzyme reactions? |
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Definition
pH
Temperature
[Enzyme]
[Substrate] |
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Term
Why does optimum pH differ for various enzymes? |
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Definition
- pH can affect ionization of A.S. or substrate
- pH can denature enzyme and disrupt structure
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Term
How does temperature affect enzymatic activity? |
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Definition
- ↑Temp → ↑ substrate KE and contact w A.S.
- If Temp ↑↑ denaturation can occur
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Term
How does enzyme concentration affect enzyme activity? |
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Definition
Rate of rxn directly proportional to [Enzyme] provided that [substrate] is sufficient to saturate all the enzyme |
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Term
How does substrate concentration affect enzymatic activity? |
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Definition
rate of rxn ↑ as [substrate] ↑ until Vmax
at Vmax all available A.S. are saturated
(Michaelis-Menten kinetics - hyperbolic curve) |
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Term
Michaelis constant
Michaelis-Menten EQ |
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Definition
Km = [S] at 1/2Vmax = (k2+k3)/k1
but k2>>>k3 so km = k2/k1
V =((Vmax*[S])/(Km + [S])) |
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Term
What are the 3 Assumptions of Michaelis-Menten Model? |
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Definition
1. [E]<<[S]
2. Rxn occurs at steady state, [ES] constant
3. V measured immediately so that back rxn from P to ES can be ignored
E + S ↔ ES → P + E |
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Term
Functionally what does Km mean? |
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Definition
Km= affinity of enzyme for its substrate=K2/K1
if Km, Affinity ↓
if Km↓, Affinity ↑ |
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Term
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Definition
kcat = Vmax/[Et]
turnover rate in molecules of substrate converted to product per enzyme molecule per second |
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Term
How does [enzyme] affect Km? |
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Definition
Km not affected by varying enzyme concentrations since it reflects the enzyme's affinity for that particular substrate |
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Term
How are V and [E] related? |
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Definition
Directly proportional.
If [E] decreases by half, V decreases by half |
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Term
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Definition
y = mx + b
1/V = (Km/Vmax) (1/S) + 1/Vmax
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