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Enzyme Kinetics
UC MED 2015
26
Medical
Graduate
10/18/2011

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Term
collection of enzymes with a common function within a particular organelle or at a specific site in the cell.
Definition
compartmentation
Term
What would be some examples of regulation by compounds that bind reversibly in the active site
Definition
the dependence of velocity on substrate concentration and product levels
Term
What would be some examples of regulation by changing the conformation of the active site?
Definition
allosteric regulators, covalent modification, protein–protein interactions, and zymogen cleavage
Term
What would be some examples of regulation by changing the concentration of the enzyme?
Definition
enzyme synthesis and degradation
Term
The velocity of all enzymes is dependent on the
Definition
concentration of the substrate
Term
The approach to the finite limit of Vmax is
Definition
saturation kinetics
Term
The concentration of substrate at which vi equals 1⁄2 Vmax
Definition
Km
Term
The rate of the reaction is directly proportional to...
Definition
concentration of enzyme
Term
When an enzyme has more than one substrate,the sequence of substrate binding and product release (affect or does not affect) the rate equation.
Definition
affect
Term
What depends on the concentration of co-substrate or product present?
Definition
apparent value of Km
Term
What “competes ”with a substrate for binding at the enzyme’s substrate-recognition site and therefore is usually a close structural analog of the substrate?
Definition
Competitive inhibitor
Term
What can overcome competitive inhibition?
Definition
increasing the substrate
Term
Competitive inhibitors,therefore, (increase/ decrease) the apparent Km of the enzyme (Km, app) because they raise the concentration of substrate necessary to saturate the enzyme.
Definition
increase
Term
Do competitive inhibitors have any effect on Vmax?
Definition
NO
Term
What are compounds that bind to the allosteric site (a site separate from the catalytic site) and cause a conformational change that affects the affinity of the enzyme for the substrate?
Definition
allosteric activators or inhibitors
Term
What is the binding of substrate to one subunit facilitates the binding of substrate to another subunit?
Definition
positive cooperativity
Term
Allosteric effectors are called?
Definition
"K effectors" because they change the Km, but not the Vmax of the enzyme
Term
Protein kinases-
Definition
phosphorylate
Term
protein phosphatase
Definition
dephosphorylates
Term
What is a bulky,negatively charged residue that interacts with other nearby amino acid residues of the protein to create a conformational change at the catalytic site? The conformational change makes certain enzymes more active and other enzymes less active.
Definition
Phosphate
Term
These proteins bind to other proteins and regulate their activity by causing a conformational change at the catalytic site or by blocking the catalytic site (steric hindrance)?
Definition
modulator proteins
Term
What are considered to be the masters of regulation through reversible protein association in the cell?
Definition
G-proteins, they bind and hydrolyze GTP
Term
The precursor proteins of proteases (enzymes that cleave specific peptide bonds) are called?
Definition
zymogens
Term
What is the role of the steroid hormone cortisol?
Definition
During fasting or infective stress,protein degradation in skeletal muscle is activated to increase the supply of amino acids in the blood for gluconeogenesis,or for the synthesis of antibodies and other components of the immune response.Under these conditions,synthesis of ubiquitin,a protein that targets proteins for degradation in proteosomes...cortisol increases this
Term
This regulation situation in which the end product of a pathway controls its own rate of synthesis; usually involves allosteric regulation of the rate-limiting enzyme by the end product of a pathway (ora compound that reflects changes in the concentration of the end product).
Definition
Feedback regulation
Term
This regulation occurs through an increased supply of substrate to an enzyme with a high Km, allosteric activation of a rate-limiting enzyme through a compound related to substrate supply, substrate-related induction of gene transcription (e.g.,induction of cytochrome P450-2E1 by ethanol), or increased concentration of a hormone that stimulates a storage pathway by controlling enzyme phosphorylation state.
Definition
Feedforward regulation
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