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Ecology Lab Quiz #1
Ecology Lab Quiz #1
58
Biology
Undergraduate 2
10/01/2008

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Cards

Term
accuracy vs precision
Definition
-accuracy measures how closely our measured value comes to the true value

-precision tells us how much variation there will be among a variety of measurements.... repeatability
Term
random vs biased errors
Definition
-imprecise measurements produce random errors... measures above just as likely as measures below

-inaccurate measurements will tend to fall in a single direction from the true value... therefore they are biased
Term
nominal data
Definition
-most simple types of measurement; give least amount of information
-consist of named categories
-we don't know anything about how the categories related to one another
-all you can do is count # of individuals in each group

***counts, also called FREQUENCY data, are a common way of dealing with nominal measurements
Term
ordinal data
Definition
-slightly more information than nominal about categories
-we can RANK here, according to some criteria
-still, can't compare exactly the differences
Term
interval/ratio data
Definition
-here, we know ranking and interval

-ratio has presence of meaningful zero on the scale... 0K or 0cm... 0 degrees celsius is interval
Term
discrete vs continuous
Definition
discrete - only certain values are possible
continuous - any value is possible (height, weight, etc)
Term
central tendency
Definition

-formal way of referring to the mean

-tells us where the middle of the measurements falls

 

denoted as an x with a line on top

Term
SD
Definition

-standard deviation tells us how far apart the individual measurements tend to fall

 -clustered = small SD

 

Term
phentotype
Definition

-all of an organism's physical and behavioral characeristics

 

-phenotypic variation is when individuals of the same species vary from one environment to the next

Term
types of phenotypic variation
Definition

-geographical range - this is limited by tolerance, and is non adaptive

 

-acclimation - reversible physiological changes to function better under local conditions (i.e. producing more red blood cells @ higher elevation)

 

-genetic (ecotypes/)

 

-reaction norms... same genes but non reversible processes

Term
ecotypes vs reaction norms
Definition

ecotypes: different genetic strains of a species... adaptions to local conditions

 Org A -> phenotype A

Org B -> phenotype B

 

reaction norm: when organism's genes have a flexible developmental program that allows the organism to grow and develop differently in each environment

-i.e. genetically identical plants will grow taller in the shade and shorter in full sun

Org A -> phenotype AorB

Term
populations
Definition

-a population represents a group of organisms and also a measurement that wil be taken on them

 

** this is a statistician's definition (not a biological population)

Term
parameters/estimates
Definition

-used to characterize a population, as n number of datum on their own aren't all that informative

 

-means and SDs are parameters

 

-the parameter describes the population, but we only measure a sample from the population

 

**mean or SD of our sample is called a statistic... we use this to estimate the population parameter

 

see table 1. in lab manual(p14)

Term
replication
Definition
-the larger a sample size, the more accurately it describes a population
Term
pseudo-replication
Definition

-artificially increasing sample size

 

done by:

-counting same organism more than once

-taking measurements that are not independent of each other (how genetically related are individuals? etc)

Term
random sample
Definition

-every member of population has equal chance of ending up in the sample

-this leads to a more representative sample

 

 

-also need to know variation within and between (i.e. a cherry tree) if applicable

Term
standard error
Definition

-helps us to quantify how much confidence we should have in our estimate of the mean of a population (this is the standard error of the mean)

- the smaller the SE associated with the mean, the more confidence we can have in the mean

 

calculated by dividing standard deviation by the square root of sample size

Term

 Factors that limit distributions

 

Definition

-what limits organism's geographical range?

-why is it more abundant in some parts of it's range than in others? (not yet dispersed, or limited survival and reproduction)

-

dispersal can be explained in a habitat by biotic and abiotic factors

 

-these questions exist on many different spatial scales.. from global to local

Term
microhabitat
Definition
-why do cottonwoods grow on only the valley bottom and not on the slopes a few metres away
Term
transect-
Definition

-a good way to get a sample representative of entire area

 

-it is a line running through the population to be sampled.... measurements are taken at regular/irregulat intervals along the transect

Term
why are experiments designed?
Definition

-to answer specific questions

-looking for a difference b/w 2+ populations or a correlation b/w 2+variables

Term
two basic approaches to answering ecological questions:
Definition

-observational study... which uses natural variation in the factor we want to test

-generally cheaper and more practical

 

-manipulated experiment

-more control over factors

Term
field vs lab
Definition

-field experimetns tend to be observational... they are generally cheaper and yield more realistic results

 

-the lab provides more control over those other factors that may influence outcome

Term
variables
Definition

independent variable - the factor that we think is the cause

 

dependent variable - is the factor that we believe is the effect

 

manipulated variable - this is the independent variable

 

response variable - this is the dependent variable

Term
treatments
Definition
-different levels of the manipulated variable
Term
controlled variable
Definition

-controlled variable - we want to control every other factor that might influencethe outcome of the experiment

 

***when a ariable other than our manipulated variable could potentially explain our results, we call it a confounding factor

Term
control
Definition

-sometimes, the control is a treatment in which the independent variable is not manipulated... used as a baseline

 

-controls can also be used to rule out the influence of experimental technique on the outcome

Term
hypothesis/prediction
Definition

-we test a hypothesis by making a prediction of it... hypotheses are more general, and to run a specific experiment you need a prediction

 

-if our measurements are different from our prediction, we say that hypothesis is falsified

Term
MVT
Definition

Marginal Value Theorum

-developed by economists - useful in understanding how animals maximize the amount of energy they gain from each unit of time spent foraging

 

"When should an animal leave a patch of food and search for a new patch?"... (answer to this would be a prediction, MVT is a hypothesis)

 

***trying to maximize E/t (energy per unit time) of foraging

Term
CPF
Definition

Central Place Foraging

-same curve as MVT of depleting success in foraging over time (DIMINISHING RETURN)

-designed for foraging back and forth to certain area ... i.e. maternal bird and chicks... how much is it worth to carry back for how long you have to travel?

 

mathematical tool is identical...

Term
trends
Definition

-trends are general patterns examined in data

 

-The trends of most interest in ecology are those of DIFFERENCES or CORRELATIONS

 

-of course, other patterns are also important

Term
Descriptive Statistics
Definition

-We want to summarize all measures in some brief and understandable way.

-most often we use statistics, such as mean and standard deviation, to help us describe our samples, so these are called descriptive statistics

 

-descriptive statistics are not useful for some data, such as nominal.

Term
Ways to help us interpret data
Definition

-descriptive statistics

-graphs

 

-graphs are helpful when descriptive statistics do not illustrate the trends

Term
graphs
Definition

-used to help interpret data

-most common ones are bar graphs and scatterplots

 

***Generally, if you are looking for a difference you will use a bar graph, and if you are looking for a correlation, use a scatterplot

 

-**almost never plot raw data

Term
distributions
Definition

-how many of any different kinds do we have?

-we do this by using a histogram (a special type of bar graph, with data ranges called bins on the x-axis, and the frequency on the Y-axis

 

NORMAL DISTRIBUTION

-we see lots of measurements that fall close to the centre of the range, and fewer and fewer as we move away from the centre in either direction

 -also known as a bell curve

 

***about 68% will fall within +/- 1 SD of mean

**about 95% within 2 SD

Term
error bars
Definition

-should be included whenever you plot means (or medians)

-either standard deviation or standart error can be used for your error bars, and the graph should clearly indicate in the caption which is being used

 

-in excel, must use custom error bars, as built in ones don't work (for business)

Term
inferential statistics
Definition
-exactly how likely we are to make a mistake if we conclude there really is a difference between our samples
Term
Null/Alternate
Definition

The alternatieve hypothesis (HA) will be that the expected difference or correlation does exist

 

-The null Hypothesis (H0) will be that there is no difference or correlation

 

*** they are not opposites of each other**

 

-there are actually two alternative hypotheses for each null hypothesis - one in each direction

-When doing our statistical tests we can usually lump these two alternatives together and consider only the general HA that a difference exist

***This is known as a "two-tailed test"

 

****We set up our tests with these 2 kinds of questions because statistical tests do not allow us to prove anythin... only to disprove

Term
Types of Error
Definition

TYPE 1 ERROR

-when we conclude that the null hypothesis is false, and it is really true

 

TYPE 2 ERROR

-conclude the null hypothesis is true, and it is really false

 

-most inferential statistical tests only tell us the probability of making a type 1 error

 

-a Power Analysis tell us the probability of making a type 2 error

Term
Interpreting Results of Tests
Definition

-Final result of most tests is a number called "P-Value"

-this numberi s the probability of getting the results we did in our samples, if the null hypothesis is true.

-it is the probability that our results can be explained purely by random chance

-it is our chance of making a type 1 error

 

- by convention, we use 0.05 as our cutoff

Term
Choosing a Stats Test
Definition

1)What question am I trying to answer?

-Are we looking for a difference or a correlation?

(if looking for a difference, can compare central tendency, variance, or distribution)

 

2)What type of data do I have?

-ratio/interval?

-nominal? ordinal?

-two samples? more?

-pairs?

-parametric? non-parametric?

-

Term
competition
Definition

-said to occur when organisms A and B BOTH do worse when together than apart

-typically, due to limited resources

 

INTERFERENCE COMPETITION

-competition that is direct and physical, in which one organisms interferes with the other in collecting the resource

 

EXPLOITATION COMPETITION

-one organism uses a resource, making it unavailable to another

 

***competition may be interspecific or intraspecific

 **When the degree of competition depends on the density of individuals in the habitat, competition is said to be DENSITY-DEPENDENT

Term
Possible explanation for results:
Definition

1)Alternate Hypothesis is true, samples are different

 

2)Sample difference represents random chance. Null is true.

 

3)Sample differene represents bias in study

 

 

** Inferential statistical tests tell us the probability of explanation 2

Term
F-Test
Definition

Tests whether or not variances are equal (null is that they are ie. no difference)

 

-used to decide which T-test to use

 

-formulates to calculate a test statistic and degrees of freedom (related to sample size).250

 

********* If calculated value is less than the critical value,, out P-value will be greater than 0.05******

*****Because, as F increases, P-value decreases

 

If P<0.05, then there is a difference, and we reject null, otherwise, fail to reject null.

Term

when reporting the outcome of a test, include:

Definition

-test statistic(t)

-degrees of freedom

-Pvalue

Term

Presenting Results

-Six pieces of information are normally needed for each result being described

Definition

1)alternative hypothesis (prediction) being tested

2)Statistical Test being used

3)The test statistic calculated

4)The degrees of freedom calculated

5)The P-value estimated

6)The conclusion drawn

Term

Presenting results-

Conclusions/trends

Definition

-The statement of hypothesis can be combined with the statement of conclusion

-A conclusion generally can also be caled a trend

-ultimately, looking for trends in the data is what research is all abut

 

-Note also that if we looked for a correlation or difference and failed to find one, this should also be reported, and is considered a trend

Term
Presenting results - significance
Definition

-We need to indicate this formal conclusion to the reader, but we can do it more conceisely than by aying formally that the alternate hypothesis has been rejected. Instead we simply say that the corelation is significant

 

significant is used in a results section only to indicate that a P-value<0.05 has been obtained, and the null hypothesis can therefore be rejected.

Term
Example of good presentation of results
Definition
"We found a significant negative correlation between density and aboveground biomass in Morning Glory (linear regression, F=59.7, df=1,23, P<0.0001)."
Term
mating systems
Definition

-define how the sexes interact during mating, reroduction, and parental care

-is influenced by internal and external factors

 

MONOGAMY-on male and one female form a bond which lasts for at least one breeding season

-usually associated with some degree of parental care by the male

 

POLYGAMY

POLYGYNY- most commonly, one male attracts a large number of females

POLYANDRY- in some cases, one female may form a long-term bond with several males

 

PROMISCUOUS-o long term bonds formed,and either sex may mate with more than one partner during a single breeding season

(typically, males are promiscuous)

Term
costs/benefits of mating systems
Definition

-ultimately, the benefit is the offspring produces

 

CONFLICT BETWEEN THE SEXES arises due to the fact that the best strategy may be different for males than for females, and vice versa.

 

-Females are generally choosier (must invest more time/energy than males, therefore reproductive success of the males depends on the decision of females)

-choose males that provide either resources or better genes

 

-males are less choosy, especially those who provide little to no parental care

Term
investment per offspring
Definition

-parent must decide how much of its resources to invest in offspring

 

-less investment = more offspring

-more investment = less offspring

 

R-Selected - organisms which tend to produce many offspring, but provide little resources to each

 -tends to be found where population densities are low

-offspring have high probability of dying, even if time is invested

 

 

K-Selected - those which produce fewer offspring bu provide more resources to each

-high population densities, offspring will face a great deal of competition

Term
EPC
Definition

extra-pair-copulations

 

-mating received by a female from a male who is not her mate.... 

-father ends up raising not his children

 

-led to evolution of mate guarding

Term
polygyny threshold
Definition

-polygyny arises when a female can obtain greater reproductive success by sharing a male with one or amore other females than she can by forming a monogamous relationship

 

-polygyny threshold is the difference in territory quality at which polygynous and monogamous females do equally well

 

-according to this model, polygyny should occur only when the quality of male territories varies so much that some females will have higher reproductive success mated to a polygynous male o a high-quality territory than they would mated monogamously to a male on a poor quality territory.

Term
sexual dimorphism/secondary sexual characteristics
Definition

 

Sexual Dimorphism-a difference in the outward appearnance of male and emale individuals of the same species.... this is a result of sexual selection

 

Secondary Sexual Characteristics- traits which distinguish sex over and above the primary sexual organs

(usually in the form of body size, ornamentation, coloration, and courtship behavior)

Term
runaway sexual selection
Definition
-situation in which females persistently choose the most extreme male phenotypes in a population, leading to contiunous elaboration of secondary sexual characteristics
Term
handicap principle
Definition

-elaborate male secondary sexual characteristics act as handicaps

-that a male can survive while bearing such a handicap indicates to a female that he has an otherwise superior genotype

Term
parasite-mediated sexual selection
Definition
-general assumption is that parasites reduce host fitness, that parasites ater male showiness, that parasite resistance is inherited, and that females choose less-parasitized males.
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