Term
|
Definition
Oxaloacetate reacts with acetyl-CoA to produce citrate
Condensation reaction
Enolization of Acteyl-CoA allows it to condense with oxaloacetate.
Inside citrate synthase, the thioester bond of acetyl-CoA is brought to and Asp residue, catalyzing it's hydrolysis.
**Hydrolysis of the thioester bond makes the overall reaction favorable**
Citrate synthase participates in a far from equilibrium reaction |
|
|
Term
|
Definition
Citrate (3o alcohol) is rearranged to isocitrate (2o alcohol) by aconitase
Citrate is dehydrated and bound to aconitase, forming cis-aconitase
Cis-aconitase is then hydrated to isocitrate
Fe4S4 coordinates the substrate and water correctly so there isn't a premature C loss in the forst step of the cycle.
|
|
|
Term
|
Definition
Isocitrate undergoes decarboxylation to α-ketoglutarate using isocitrate dehydrogenase.
CO2 and NADH are also produced
**Decarboxylation makes the overall reaction favorable**
Isocitrate + NAD+ --> Oxalosuccinate + NADH
Oxalosuccinate --> α-ketoglutarate + CO2
Isocitrate dehygrogenase is NAD+ dependent and participates in a far from equilibrium reaction |
|
|
Term
|
Definition
α-ketoglutarate undergoes decarboxylation to form succinyl-CoA using α-ketoglutarate dehydrogenase
CO2 and NADH are also produced
α-ketoglutarate dehydrogenase undergoes a far from equilibrium reaction |
|
|
Term
|
Definition
Succinyl-CoA to Succinate via Succinyl-CoA synthetase GTP is also produced.
The CoA bond in succinyl-CoA is very high energy. This energy is conserved throughout the reaction, even in the intermediates. It is stored in:
1. Succinyl-phosphate
2. 3-phospho-His
3. GTP
This is an example of substrate level phosphorylation |
|
|
Term
|
Definition
Succinate dehydrates to form fumarate via succinate dehygrogenase.
FADH2 is also produced.
Enzyme is inhibited by Malonate |
|
|
Term
|
Definition
Fumarase catalyzes the hydration of the double bond in fumarate to form malate. |
|
|
Term
|
Definition
NAD+ is used with Malate dehydrogenase to regenerate oxaloacetate from malate |
|
|
Term
Swinging Arm/ lipoyl-lysine arm |
|
Definition
USed to move intermediates to the correct location/active site (from one enzyme to the next). Used in step two of TCA. Helps increase the reaction rate. |
|
|
Term
How is TCA flux control acheived? |
|
Definition
1. Substrate availability
2. Product inhibition
3. Competitive feedback
The control is spread out through many enzymes, instead of relying on just one
Major regulators include the substrates, acetyl-CoA, oxaloacetate, and NADH
When respiration and muscle workload increase, so does production in TCA cycle |
|
|
Term
|
Definition
Reactions that utilize intermediates from TCA. This helps drive TCA to create more products, but it also prevents the build-up of intermediates in the mitochondria.
ex: Gluconeogenesis uses oxaloacetate. It is converted to malate or aspartate before moving into the cytosol
ex:Fatty acid biosynthesis uses Acetyl-CoA. It comes from TCA as citrate and is brokendown using ATP-citrate lyase
ex: AA biosynthesis uses α-ketoglutarate and oxaloacetate. This is in the cytosol, so both intermediates are converted to other AA's first |
|
|
Term
|
Definition
Reactions that replenish intermediate in TCA cycle
Pyruvate decarboxylase senses when there is a lack of intermediates becaue a lack of intermediates leads to a lack of oxaloactetate and an increase in Acetyl-CoA. The increase in acetyl-CoA activate the reaction of pyruvate dehydrogenase, causing the production of oxaloacetate. Oxaloacetate can then react with the excess acetyl-CoA to continue TCA |
|
|
Term
What are mulienzyme complexes and what are their advantages? |
|
Definition
Groups of noncovalently associated enzymes that catalyze two or more sequential steps in a metabolic pathway. Increase effiency of reactions.
Advantages:
1. Reaction rates are increased because there is less space the substrates must travel before reaching their next active site to bind with.
2. "wasting" of metabolites (intermediates) is diminshed because there is less chance of side reactions occuring
3. Multienzyme complexes are coordinately controlled |
|
|