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Chapter Nine (quiz five)
Microbial Genetics
73
Microbiology
Undergraduate 2
02/26/2013

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Term
Genetics is?
Definition
the study of the inheritance of living things
-transmission of traits from parent to offspring
-expression and variation of those traits
-structure and function of the genetic material
-how this material changes
Term
Levels that genetic study occurs on? (4)
Definition
1. Organismal
2. Cellular
3. Chormosomal
4. Molecular
Term
How do cells self-replicate
Definition
either by binary fission or budding
Term
All cells have all the same genetic material... how does that work?
Definition
every cell has the "book" but different cells "read" different "chapters" to have different characteristics
ex. skin cell versus cardiac cell
Term
What is a Genome?
Definition
a collection of all DNA present in an organism
ex. bacterial genomes= .4-9.4 million nucleotides
human genome= 4 billion nucleotides
Term
Chromosomes?
Definition
genomes are set up in these.
Prokaryotes have one which contains entire genome
Eukaryotes may divide genome into many chromosomes
Term
How many chromosomes do humans have?
Definition
46 total.. 23 pairs
-22 autosomes
- a pair of sex chromosomes
Term
Gene definition?
Definition
DNA sequences that have a defined function
OR
a certain segment of DNA that contains the necessary code to make a protein of RNA molecule
Term
Eukaryotes nonchromosomal DNA
Definition
mitochondria and chloroplasts contain their own DNA
Term
Prokaryotes (and fungi) nonchromosomal DNA
Definition
have plasmids that are nonessential, circular pieces of DNA
Term
Size and packaging of genomes?
Definition
the stretched out DNA can be 1,000 times longer than the cell
each cell contains 6feet of DNA
so it must be packaged tightly
Term
Eukaryotic chromosomes
Definition
-DNA molecules tightly wound around HISTONE proteins
- located in nucleus
- vary in number from a few to hundreds
- can occur in pairs or singles
-linear
Term
Pairs of chromosomes are called
Definition
diploid
Term
Singles of chromosomes are called?
Definition
haploid
Term
Bacterial Chromosomes
Definition
-condensed and secured by means of histone-like proteins
-located in nucleiod region of cytoplasm
-single, circular chromosome
Term
Karyotyping
Definition
is the number and appearance of chromosomes in the nucleus of a eukaryotic cell
Term
What can genes code for?
Definition
1. structural genes: code for proteins
2. rRNA or tRNA
3. Regulatory genes: control gene expression
Term
Genotype?
Definition
entire collection of genes in an organism
ATCG
Term
Phenotypes
Definition
the traits of an organism, which are an expression of the genotype
ex. eye color
Term
Who discovered basic DNA structure?
Definition
James Watson and Francis Crick in 1953
Term
Basic unit of Nucleotides
Definition
phosphate
deoxyribose sugar
nitrogenous base
Term
Options for nitrogenous base?
Definition
Adenine, Guanine, Thymine or Cytosine
Term
Purine bases?
Definition
two rings-- A and G
Term
Pyrimidine bases?
Definition
one ring-- T and C
Term
How are the nitrogenous bases paired?
Definition
hydrogen bonds
Term
What must occur to the bonds in order for reading to occur
Definition
they must be broken or "unzipped"
Term
What is Adenine paired with?
Definition
Thymine
Term
What is Gaunine paired with?
Definition
Cytosine
Term
What do nucleotides bound too?
Definition
a sugar-phosphate linkage... covalently boned to
Term
what is the ribbon backbone arrangement called
Definition
antiparallel. the 5' end of end strand matches up with the 3' end of the other end
Term
DNA replication?
Definition
the process of duplicatating the genetic code so it can be passed to the offspring
Term
The 3 main actions of enzymes with DNA replication?
Definition
1. separate the strands
2. copy its template
3. produce two new daughter molecules
Term
Helicase does?
Definition
unzipping the DNA helix, breaks the H+ bonds
Term
Primase action?
Definition
synthesizing an RNA primer
Term
DNA polymerase III
Definition
adding bases to the new DNA chain; proofreading the chain for mistakes
Term
DNA polymerase I
Definition
removing primer, closing the gaps, repairing mismatching
Term
Ligase
Definition
final binding of nicks in DNA during synthesis and repair
Term
Topoisomerase I and II
Definition
supercoiling and untangling
Term
What is semiconservative replication>
Definition
Each strand acts as a template, the result is on strand of old and one strand of new
this allows for accurate replication
5' to 3' direction
Term
3 stages of DNA replication?
Definition
1. Initiation
2. Elongation
3. Termination
Term
Initiation step of DNA replication
Definition
-helicases separate the DNA at the origin
-primases produce RNA primers
-DNA polymerase III begins adding DNA nucleotides
Term
Elongation step of DNA replication
Definition
-DNA polymerase III continues adding DNA bases
-DNA bases can only be added to the 3' prim end, requiring leading and lagging strands
Term
Termination step of DNA replication
Definition
-ligases link new DNA strand into a circle
Term
Leading strand?
Definition
made from the 3' to 5' stand of DNA, continuously made headed straight toward the origin of replication
Term
Lagging strand?
Definition
made from 5' to 3' stand of DNA, needs many RNA primers, moving away origin, synthesized discontinuously by a series of fragments.
Term
okazaki fragments?
Definition
are short, newly synthesized DNA fragments that are formed on the lagging template strand during DNA replication
Term
What is central dogma?
Definition
DNA -> mRNA -> protein
Term
Transcription?
Definition
the master code of DNA is used to synthesize an RNA molecule
DNA -> RNA
Term
Translation?
Definition
the information in the RNA is used to produce proteins
RNA -> proteins
Term
Exceptions to central dogma?
Definition
viruses and retroviruses
Term
Do you remember what reverse transcription is?
Definition
RNA to DNA, only occurs in retroviruses
Term
What are triplets?
Definition
three consecutive bases on the DNA strand
-each triplet represents a code for a particular amino acid
Term
What do proteins ultimately determine?
Definition
phenotype
Term
What are 3 bases of mRNA called?
Definition
codon!
Term
How is RNA different from DNA
Definition
-single stranded molecule
-contain uracil instead of thymine
-the sugar is ribose instead of dioxyribose
Term
What RNA is translated into a protein molecule?
Definition
mRNA
Term
tRNA?
Definition
brings in the amino acids, for each of the 20 amino acids there is at least one specialized type of tRNA to carry it
Term
tRNA structure?
Definition
cloverleaf?
Term
Bottom loop of the tRNA
Definition
anticodon! designates the specificity of the tRNA, binds to the condon of the mRNA
Term
Where does the amino acid bind on the tRNA
Definition
the opposite end of the molecule from the anticodon
Term
What role does ribosome play in all this?
Definition
it is a mobile molecular factory for translation "gets everyone together and allows for string to be made correctly"
Term
RNA polymerase?
Definition
uses the 3' to 5' strand of DNA to make mRNA
Term
What are the 5 stages of Translation?
Definition
1. initiation
2. elongation
3. termination
4. protein folding
5. protein processing
Term
What initiates translation?
Definition
-mRNA molecule leaves DNA transcription site
-mRNA transported to ribosomes in the cyoplasm
-ribosomal subunits are specifically adapted to assembling and forming sites to hold the mRNA and tRNA
Term
What is Redundancy of the genetic code?
Definition
a particular amino acid can be coded for by more than a single codon
Term
What is wobble?
Definition
Wobble baby, wobble baby, wobble baby, wobble
-in many cases, only the first two nucleotides are required to encode the correct amino-acid, thought to permit some variation or mutation without altering the message
ex: acu, acc, aca, acg all encode for threonine
Term
what is the start nucleotide?
Definition
AUG
Term
What kind of bonds are made between amino acids during initiation?
Definition
peptide bonds-- convalent bond
Term
what terminates protein synthesis?
Definition
a termination codon or nonsense codon
Term
What happens when the termination codon in reached?
Definition
the bond is broken between, the final tRNA and the finished polypeptide chain. releasing it from the ribosome
Term
What happens before the protein is released?
Definition
it starts to fold up upon itself to achieve the biologically active tertiary conformation.
Term
What sort of posttranslation modifications may be needed?
Definition
-starting amino acid clipped off
-cofactors added
-join with proteins to form quaternary levels of structure
Term
Examples of points that pathogens affect to screw things up.
Definition
- changes the shape of 30S portion, causes the code on mRNA to be read wrong
-interferes with attachment of tRNA to mRNA-ribosome complex
-binds to 50S portion, prevents trans-location movement of ribsome along mRNA
-binds to 50S protion and inhibits formation of peptide bonds
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