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Chapter 3
Microscopy and Staining
45
Microbiology
Undergraduate 2
01/30/2011

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Term
Anton van Leeuwenhoek
Definition
First person to see individual microorganisms. Made lenses that could magnify up to 100 to 300 times
Term
Microscopy
Definition
Technology of making very small things visible to the human eye
Term
Wavelength
Definition
Length of a light ray. Distance between two adjacent crests or troughs
Term
Resolution
Definition
The ability to see two items as separate and discrete units
Term
Resolving power
Definition
Numerical measurement of the resolution that can be obtained with that lens
Term
Numerical aperture (NA)
Definition
A math expression relating to the extent that light is concentrated by the condenser lens and collected by the objective.
Term
Reflection
Definition
If the light strikes and object and bounces back
Term
Transmission
Definition
Passage of light through an object
Term
Absorption
Definition
If light rays neither pass through nor bounce off on object, but are taken up by the object
Term
Luminescence
Definition
Absorbed light rays, especially UV light rays, are changed into longer wavelengths and reemitted
Term
Fluorescence
Definition
If an object is only luminescent when light strikes it
Term
Phosphorescent
Definition
If an object continues to emit light when light rays no longer strike it
Term
Refraction
Definition
Bending of light as it passes from one medium to another of different density
Term
Index of refraction
Definition
Measure of the speed at which light passes through the material
Term
Diffraction
Definition
As light passes through a small opening, such as a hole, slit, or space between two adjacent cellular structures, the light waves are bend around the opening
Term
Light microscopy
Definition
Refers to the use of any kind of microscope that uses visible light to make specimens observable
Term
Modern light microscope is descendent from whom?
Definition
Hooke's compound microscope
Term
Optical microscope
Definition
A compound light microscope(more than one lens)
Term
Parfocal
Definition
When changing from one objective lens to the next, the image is still be in nearly focus
Term
Bright field illumination
Definition
An ordinary condenser in a light microscope causes light to be concentrated and transmitted directly through the specimen
Term
Dark field illumination
Definition
A microscope has a condenser that that prevents light from being transmitted through the specimen but instead causes the light to reflect off the specimen at an angle. Causing a light object to be seen on a dark background
Term
Phase contrast microscopy
Definition
Special condenser and objective lenses that accentuate small differences in the refractive index of various structures within the organism
Term
Nomarski microscopy
Definition
Makes use of differences in refractive index to visualize unstained cells and structures. Produces much higher resolution than standard phase contrast
Term
Fluorescence microscopy
Definition
UV light is used to excite molecules so that they release light of a longer wavelength that that originally striking them
Term
Fluorescent antibody staining
Definition
Diagnostic procedures to determine whether an antigen is present.
Term
Transmission electron microscope
Definition
Gives a better view of the internal structure of microbes than do other types
Term
Shadow casting
Definition
Spraying a heavy metal over a specimen at an angle leaves a shadow where metal is not deposited, and produces images with a 3D appearance
Term
Freeze fracturing
Definition
Technique to view interior of a cell. Cell is frozen then fractured to reveal the interior of a cell
Term
Freeze etching
Definition
Involves evaporation of water from frozen and fractured specimen which exposes additional surfaces for examination
Term
Scanning electron microscope
Definition
Used to create images of the surfaces of specimens, can resolve objects as close as 20nm giving magnif to approx 50K. Gives 3D views of exterior of cells
Term
Scanning tunneling microscopes
Definition
Deep images, can be made using this technique, also movies can be used to examine live specimen
Term
Scanning tunneling microscopes
Definition
Deep images, can be made using this technique, also movies can be used to examine live specimen
Term
Atomic force microscope
Definition
Allows 3d imaging and measurement of structures. Useful in studying DNA because enables investigators to distinguish between bases . Can also measure forces
Term
Smear
Definition
microorganisms from a loopful of medium are spread onto the surface of a glass slide, can be used to view killed organisms.
Term
Heat fixation
Definition
After a smear is made, and allowed to air dry, it is quickly passed through an open flame. Accomplishes 3 things;
1. Kills organisms
2. Causes organisms to adhere to the slide
3. Alters the organisms so they more readily accept stains
Term
What are the most commonly used dyes in micro?
Definition
Cationic or basic dyes such as methylene blue, crystal violet, safranin, and malachite green. These dyes are attracted to any negatively charged cell components
Term
What are some acidic/anionic dyes?
Definition
Eosin and picric acid. They are attracted to positively charged cell structures
Term
Simple stain
Definition
Makes use of a single dye and reveals basic cell shapes and cell arrangements
Term
Differential stain
Definition
Makes use of 2 or more dyes and distinguishes between 2 kinds of organisms or between 2 different parts of an organism. Common ones are : gram stain, ziehl-neelsen acid-fast stain, and the schaeffer-fulton spore stain
Term
Gram stain
Definition
Most frequently used differential stain
Bacterial cells take up crystal violet, iodine is added and helps retain the stain in certain cells. Those structures that cant retain crystal violet are decolorized when treated with ethanol-acetone solution, rinsed, and counterstained with safranin.
Term
Mordant
Definition
A chemical that helps retain the stain in certain cells
Term
Ziehl-Neelsen Acid-Fast stain
Definition
Can be used to detect TB and leprosy causing organisms of the genus Mycobacterium. Acid fast retain bright red color. This is due to the lipid components of cell wall
Term
Negative staining
Definition
Used when a specimen or part of a specimen resists taking up a stain. Stains the background around the organism, and organism remains clear and stand out. A differential stain can be used to demonstrate the presence of the cell inside the capsule
Term
Flagellar staining
Definition
Too thin to be seen easily with the light microscope. coat the surfaces of flagella with dye or a metal such as silver
Term
Schaeffer-Fulton spore stain
Definition
Endospore walls are very resistant to staining, so a special technique must be used. Heat fixed smears are covered with malachite green and then gently heated until they steam. ~5 minutes of this steaming makes walls more permeable to the dye
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