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Chapter 28
Prokaryotes
64
Biology
Undergraduate 1
12/08/2009

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Term
Microfossils
Definition
fossilized forms of microscopic life
Term
stromatolites
Definition
mats of cyanobacteria cells that trap mineral deposits
Term
isotopic analysis of carbon-12 in fossils suggests that ___ __ was active 3.8BYA
Definition
carbon fixation
Term
Biomarkers are...
Definition
organic molecules of biological origin
Term

prokaryotes are the oldest, and structurally _____ forms of life

 

prokaryotes are ubiquitous. what's ubiquitous?

 

bacteria are aka ______

archaea are aka ______

Definition

simplest

 

ubiquitous: existing everywhere

 

eubacteria

 

archaebacteria

Term

Prokaryotic Features:

 

unicellularity:

Cell Size:

Chromosome:

internal compartmentization:

flagella:

cell division:

genetic recombination:

Definition

unicellularity: Most are single celled. some form complex biofilms

Cell Size: Small. Less than 1um diameter.

Chromosome: single circular dsDNA. found in nucleoid.

internal compartmentization: no membrane bound organells.

flagella: Simple in structure; spin like propellers

cell division: Most divide by binary fission

genetic recombination: occurs through horizontal gene transfer

Term
What are 2 types of photosynthesis in prokaryotes?
Definition

oxygenic

anoxygenic

Term
chemolithotropic prokaryotes
Definition
derive energy from inorganic molecules
Term

In the plasma membrane of:

 

bacteria, lipids are ___

 

archaea, lipids are ____

 

(what types of linkages are there b/t lipids and glycerol?)

Definition

bacteria, lipids are unbranched

(ester linkage)

 

archaea, lipids are branched.

(ether linkage)

Term
Tetraethers in archaea form a _____
Definition
monolayer
Term

bacteria vs. archaea

 

Cell wall:

DNA replication:

Gene expression:

Definition

 

Cell wall: bacteria have peptidoglycan, archaea don't

DNA replication: archaea replication is like eukaryotes

Gene expression: archaea transcription and translation are like eukaryotes.

Term
What are the 5 early classifications for prokaryotes?
Definition

 

1. Photosynthetic or nonphotosynthetic

2. Motile or nonmotile

3. Unicellular or filamentous

4. Formation of spores or division by transverse binary fission

5. Importance as human pathogens or not

 

Term
What are the 5 molecular classifications of prokaryotes?
Definition
  1. Amino acid sequences of keys proteins
  2. percent guanine-cytosine content
  3. nucleic acid hybridization
  4. ribosomal RNA sequencing
  5. whole-genome sequencing
Term
The three-domain (Woese) system of phylogeny is based on ___ ___
Definition
rRNA sequences
Term
Prokaryotes have one of 3 basic shapes. What are they?
Definition

bacillus (rod shaped)

coccus (spherical)

spirillum (helical-shaped)

Term

bacterial cell wall protects from ___ and ____

 

it consists of _____ which are polysaccharides cross-linked with peptides

 

Archaea do not possess peptidoglycan

Although, some have _____

 

the cell wall is the basis of the ___ ___

Definition

swelling and rupturing

 

peptidoglycan

 

pseudopeptidoglycan

 

gram stain

Term
4 steps of a gram stain:
Definition
  1. crystal violet applied
  2. iodine applied
  3. alcohol wash applied
  4. safranin (red dye) applied
Term
The difference in the gram stain process for gram positive and gram negative cells.
Definition

During the alcohol wash, the peptidoglycan (PG) will be dehydrated and keep the dye inside for the gram positive.

 

The thin layer in gram negative cells can not keep color in.

 

When safranin is applied, only gram negative will absorb the red dye.

 

 

gram positive : violet

gram negative: red

Term
Gram postive vs. gram negative structure:
Definition

gram-positive:

thick PG

teichoic and lipoteichoic acids

 

gram negative:

THIN PG

outer membrain containing lipopolysaccharide

Term
S-layer
Definition

A rigid paracrystalline layer found in some bacteria and archaea

 

aids in attachment

Term
capsule
Definition

a gelatinous layer found in some bacteria

Aids in attachment

protects from immune system

Term
Pili
Definition

Short hairlike structures

found in gram negative bacteria

aids in attachment (fibriae) and conjugation

Term
flagella
Definition

long, helical structures

composed of the protein flagellin

involved in locomotion

Term
nucleoid region
Definition

contains the single circular chromosome

may also contain plasmids

Term
ribosomes
Definition

smaller than those of eukaryotes and differ in protein and RNA content

 

targeted by antibacterial antibiotics

Term
internal membranes
Definition

invaginated cell membrane

for respiration or photosynthesis

Term
Endospores
Definition

highly resistant structures

release upon cell lysis

can germinate back to normal cell

Term

Prokaryotes can't reproduce sexually. However, they can undergo ___ ____ ___

 

What are the 3 types of this?

Definition

horizontal gene transfer

 

  1. conjugation
  2. transduction
  3. transformation
Term
conjugation
Definition
cell to cell contact
Term
transduction
Definition
by bacteriophages
Term
transformation
Definition
from the environment
Term
E. Coli conjugation is based on the presence of __ ____
Definition
F plasmid
Term

F+ cells:

 

F- cells:

Definition

F+ cells: contain the plasmid

produces an F pilus to connect to an F- cell

 

F- cells: doesn't contain the plasmid

Term

The transfer of the F plasmid occurs through the ___ ___

 

???

Definition

conjugation bridge

 

is the F pilus the conjugation bridge?

Term

The F plasmid can integrate into the ____ ___

 

Hfr cell stands for...

 

The F plasmid can also ____ itself by reversing the integration process

Definition

bacterial chromosome

 

high frequency of recombination

 

excise

Term
An inaccurate excision may occur. This produces a __ ___
Definition
F' cell
Term
conjugation b/t an F' cell and an F- cell results in a ...
Definition
partial diploid or merodiploid
Term

Generalized transduction

 

occurs via accididents in the ___ cycle

 

____ package bacterial DNA and transfer it in a subsequent infection

 

______ gene can be transferred

Definition

lytic

 

viruses

 

Virtually any

Term

specialized transduction

 

Occurs via accidents in the ____ cycle

 

imprecise excision of ____ DNA

 

___________ genes can be transferred

Definition

lysogenic cycle

 

prophage

 

only a few

Term

natural transformation

 

occurs in many ___ species

 

DNA that is released from a ___ cell is picked up by another ____ cell

 

Definition

bacterial

 

DNA from DEAD cell is picked up by a LIVE cell.

Term

Artificial transformation

 

accomplished in ___

 

Used to transform E. Coli for ___ ___

Definition
molecular cloning.
Term
Conjugative plasmids may pick up _____ ____
Definition
additional genes
Term
R (resistance) plasmids
Definition

encode antibiotic resistance genes

 

ie. staphylococcus aureus

Term
virulence plasmids
Definition

encode genes for pathogenic traits

 

ie. enterobacteriaceae

Term

Mutations can arise _____in bacteria.

  • can also be cased by ___ and ____
Definition

spontaneously

radiation and chemicals

Term

growth of methicillin-resistant staph aureus (MRSA)

and vacomycin resistant staph aureus (VRSA) show mutation and plasmids can do what?

Definition
spread rapidly in a population
Term

acquisition of carbon

autotrophs:

heterotrophs:

 

energy:

chemolithotrophs:

phototrophs:

Definition

acquisition of carbon

autotrophs: from inorganic CO2

heterotrophs: from organic molecules

 

energy:

chemolithotrophs: from inorganic chemicals

phototrophs: from sunlight

Term

examples of:

Photoautotrophs

chemolithoautotrophs

photoheterotrophs

chemoheterotrophs

 

(doesn't seem vital)

Definition

cyanobacteria

nitrifiers

purple and green nonsulfur bacteria

majority of prokaryotes

Term

Type III secretion system

 

Found in ___-____ bacteria

 

used to transfer ____ proteins directly to host cells

 

---rest seems w/e----

Yersinia pestis:

pseudomonads:

Definition

gram negative

 

virulence

 

---

 

bubonic plague

plant pathogen

Term

Tuberculosis

 

________ Tuberculosis

Afflicts ____ ____

MDR strain:

Definition

Mycobacterium

 

resperatory system

 

multidrug resistant strain

Term

Dental caries (tooth decay)

 

plaque consists of ____ ___

 

streptococcus ferments sugar to ____ ___

 

tooth enamel ____

Definition

bacterial biofilms

 

lactic acid

 

degenerates

Term

Peptic ulcers

 

Helicobacter pylori is the main cause

treated with ____

Definition
antibiotics
Term

Gonorrhea

 

Neisseria gonorrhoeae

Can pass from mom to baby via ___ ___

can cause ____ ____ ___ (PID)

Definition

birth canal

 

pelvic inflammatory disease

Term

chlamydia

chlamydia trachomatis

"____ STD"

can cause ___ and ____ ___

Definition

"silent STD"

PID and heart disease

Term

Syphilis

Treponema Pallidum

Can pass from mom to baby via ___ ___

4 distinct stages:

primary -

secondary -

tertiary -

quaternary -

Definition

birth canal

 

primary - chancre

secondary -rash

tertiary -latency

quaternary -heart and nerve damage

Term
Decomposers
Definition
release a dead organisms atoms to the environment
Term
photosynthesizers
Definition
fix carbon into sugars
Term
nitrogen fixers
Definition
reduce N2 to NH3
Term
Mutualism:
Definition
symbiotic relationship b/t prok/euk where both parties benefit.
Term
commensalism:
Definition
symbiotic relationship b/t prok/euk where one organism benefits and the other is unaffected
Term
parasitism
Definition
symbiotic relationship b/t prok/euk where one organism benefits and the other is harmed.
Term
Genetic Engineering
Definition

biofacteries that produce various chemicals

 

like insulin and antibiotics

Term
bioremediation
Definition
removal of polutants from water/air/soil
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