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Chapter 17- Origins and Evolutions
Microbiology: An Evolving Science
53
Microbiology
Undergraduate 3
04/15/2012

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Term
Stromatolites
Definition
bacterial communities; earliest forms of life for which we have clear fossil evidence
Term
Stromatolites
Definition
bulbous masses of sedimentary layers of limestone around 3.4 billion years old
Term
Fundamental conditions required to develop first cells
Definition

Essential Elements
Continual Source of Energy

Temperature Range permitting Liquid Water

Term
Essential elements
Definition
compose organic molecules
Term
Continual source of energy
Definition
mainly nuclear fusion with reactions from the sun
Term
Temp. range permitting liquid water
Definition
without this, metabolic reactions would cease
Term
Stromatolites
Definition
3.4 GYR
Term
Microfossils
Definition
2.0 GYR
Term
Biosignatures
Definition
biochemical indicators of life
Term
Isotope ratios
Definition
12C appeared in rocks
Term
Biological enzymes
Definition
lzy; prefer lighter isotope (12C) compared to 13C
Term
Cyanobacterial hopanoids
Definition
steroid-like membrane molecules that are particularly durable; 2.5GYR (ex: 2-methylhopanoid in W. Australian sedimentary rock)
Term
Anaerobic oxidation-reduction reactions
Definition
oxidized molecules were generated by reactions driven by UV light
Term
Light driven ion pumps
Definition
such as bacteriorhodopsin of haloarchaea; could have conducted the first kind of autotrophy
Term
Methanogenesis
Definition
methanogenic archaea combine H2 and CO2 producing CH4 and H2O
Term
Humans
Definition
known as heterotrophs
Term
Metabolism of the first cells
Definition
ALL were anaerobic reactions
Term
Models for early life
Definition
Prebiotic Soup
Metabolist Model
RNA world
Term
Prebiotic Soup
Definition

Model for early life that suggests small organic molecules arise abiotically from simple reduced chemicals sparked by lightning. (Miller)

Wrong because no CH4 substrates formed, as well as NH3, so no amino acids were made

Term
Metabolist Model
Definition
A model indicating that self-sustaining abiotic chemical reactions could have formed the basis of cellular metabolism; that the genetic code may have originated from synthesis of an amino acid complexed to a dinucleotide
Term
RNA world
Definition

Model that suggest RNA is a better candidate than DNA for the earliest molecule because:
-it was used as genomes by some viruses

-uracil is a precursor for thymine

-possesses catalytic properties as ribozymes

-RNA ribosome carries out protein synthesis

Term
Requirements
Definition
"No one model of life's origin yet addresses all the ________________ of a living cell."
Term
Panspermia
Definition
life was seeded on earth by meteorites
Term
Mechanisms of evolution
Definition

poupulations of organisms diverge from these:

random mutations

natural selections

reductive (degenerative) evolution

Term
random mutations
Definition
chromosome replicates
Term
natural selection
Definition
favors organisms that produce more offspring
Term
reductive (degenerative) evolution
Definition
loss or mutation of DNA encoding unselected traits
Term
Molecular clocks
Definition
temporal information contained in a macromolecular sequence where random mutations happen in each round of replication
Term
Small subunit rRNA (SSU rRNA)
Definition
widely used molecular clock is the gene encoding these
Term
rRNA
Definition
used to make proteins; cant afford mutations (highly conserved)
Term
Phylogenetic Tree
Definition
frequency of differences between homologous sequences can be used to generate this.
Term
Phylogenetic Tree
Definition
estimates the relative amounts of evolutionary divergence between sequences
Term
Divergence data
Definition
can be used to infer the length of time since two species shared a common ancestor
Term
Three domains of life
Definition
bacteria, archaea, and eukarya
Term
Carl Woese
Definition
first used SSU rRNA phylogeny to reveal the existence of the third kind of life domain (archaea)
Term
Horizontal gene transfer
Definition
acquisition of a piece of DNA from another cell
Term
Vertical gene transfer
Definition
transmission of an entire genome from parent to offspring
Term
Horizontally
Definition
Among prokaryotes, DNA is transferred ________ by plasmids, transposable elements and bacteriophages
Term
GC/AT ratio
Definition
Evidence of transfer is a DNA sequence whose _______ differs from the rest of the genome.
Term
Monophyletic
Definition
vast majority of gene transfer is vertical and the lineages are this
Term
genomes
Definition

contain two kinds of genes

informational genes

operational genes

Term
informational genes
Definition
encode products essential for transcription and translation; interact with many cellular components; VERTICAL gene transfer
Term
Operational genes
Definition
encode products that govern metabolism, stress response, and pathogenicity; fuction with relative independence; HORIZONTAL gene transfer
Term
Symbiosis
Definition
intimate association of two unrelated species
Term
Types of symbiosis
Definition
Mutalism and Parasitism
Term
Mutualism
Definition
both partners benefit
Term
Parasitism
Definition
one partner benefits, while the other is harmed
Term
Coevolution
Definition
symbiosis leads to this; where evolution of two species is in response to one another.
Term
Leaf-cutter ants
Definition
cultivate fungal partners; example of microbial symbiosis; when ant gets a parasitic fungus, it grows bacteria that produces an antibotic against it.
Term
Endosymbiosis
Definition

occurs when one partner grows within the body of another
example: human intestinal flora
can be intracellular


Another example: Algae Chlorella growing in paramecium; algae provides nutrients while the protozoa shelters the algae

Term
Brugia malayi
Definition
filarial nematode that harbors Wolbachia endosymbionts; its presence is required for the nematode's embryonic development
Term
Theory of Endosymbiosis
Definition
Proposed by Lynn Margulis, this theory states that assimilation of an endosymbiont as mitochondria and chloroplasts played a central role in eukaryotic evolution.
ex: mitochondria evolved from an alphaproteobacterium that infected...
chloroplasts that evolved from cyanobacteria.
Term
Reduction
Definition
Genomes of mitochondria and chloroplasts both show extreme __________. Evidence that organelles have genomes!
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