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Chapter 16
Woop
38
Biology
Undergraduate 1
11/01/2012

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Term
Transformation 
Definition

A change in genotypes due to assimilation of foreign DNA 

[image]

Term
Bacteriophages 
Definition
Viruses used for genetic research 
Term
Chargaff's Rule 
Definition
States that in any species there is an equal number of A and T bases, and an equal number of G and C bases
Term
Double Helix
Definition
The shape of DNA 
Term
Semiconservative Model 
Definition
A form of replication during which each old strand synthesises a new strand, so that each daughter strand is bonded with a parent strand 
Term
Conservative Model 
Definition
A form of DNA synthesis in which the two parent strands bond together and the two daughter strands bond together
Term
Dispersive Model 
Definition
A form of DNA synthesis in which every strand is a mix of old and new
Term
Origins of Replication 
Definition

Special sites on the DNA molecule where the two strands are seperated, opening up a replication "bubble"

A eukaryotic chromosome may have hundreds or even thouands of origins of replication 

Proceeds in both directions until the entire molecule is copied

 [image]

Term
Replication Fork 
Definition
A Y shaped region where new DNA strands are elongating [image]
Term
Helicases 
Definition

Enzymes that untwist the double helix at the replication forks

[image]

Term
Single-Strand Binding Protein 
Definition
A protein in DNA synthesis that binds to and stabilizes single-stranded DNA until it can be used as a template [image]
Term
Topoisomerase 
Definition
An enzyme in DNA synthesis that corrects "overwinding" ahead of the replication forks by breaking, swivelling, and rejoining DNA strands [image]
Term
RNA Primer 
Definition

The initial nucleotide strand that nucleotides can build off 

Is essential because DNA polymerases cannot initiate synthesis of a polynucleotide, they can only add nucleotides to the 3' end 

Is short (5-10 nucleotides long)

[image]

Term
Primase 
Definition
An enzyme in DNA synthesis that can start an RNA chain from scratch and adds RNA nucleotudes one at a time using the parental DNA as a template [image]
Term
DNA Polymerases 
Definition
Catalyze the elongation of new DNA at a replication fork 
Most require a primer and a DNA template strand  [image]
Term
Necleoside Triphosphate 
Definition
Each nucleotide that is added to a growing DNA strand is known as a _______
Term
dATP 
Definition

(deoxyadenosine triphosphate)

A form of adeonsine triphosphate that supplies adenine to DNA

Is similar to the ATP of energy metabolism 

Difference is in their sugars, dATP has deoxyribose and ATP has ribose 

As each monomer of dATP joins the DNA strand, it loses two phosphate groups and a pyrophosphate 

 

Term
Antiparallel Elongation
Definition

The term that explains the direction of human DNA replication 

DNA polymerases add nucleotides only to the free 3' end of the growing strand, therefore, a new DNA strand can eongate only in the 3' direction 

Term
Leading Strand 
Definition

The strand of DNA in DNA synthesis that moves towards the replication fork

[image]

Term
Lagging Strand 
Definition

The other strand of DNA in DNA synthesis than the leading strand 

Work in the direction away from the replication fork 

Synthesized at a series of segments called Okazaki fragments who are joined by DNA ligase [image]

Term
Okazaki Fragments 
Definition

Short, newly synthesized fragments of DNA that are formed by the lagging strands 

Are joined together by DNA ligase 

[image]

Term
DNA Ligase 
Definition
The enzyme that binds together the Okazaki fragments in the lagging strand 
Term
DNA Pol III 
Definition
A form of DNA polymerase that uses the parental DNA as a template to synthesize new DNA by covalently adding nucleotides to the 3' end of a pre-existing DNA strand or RNA primer 
Term
DNA Pol I
Definition
A form of DNA polymerase that removes RNA nucleotides of primer from 5' ebnd and replaces them with DNA molecules 
Term
The DNA Replication Machine 
Definition

The proteins that participate in DNA replication as a whole 

Is stationary during the replication process 

DNA plymerases "reel in" parental DNA and "extrude" newly made DNA molecules 

Term
Mismatch Repair 
Definition

The process in which enzymes repair sections of DNA improperly switched during replication 

DNA can be damaged by chemicals, radioactive emissions, X-rays, UV lights, and certain molecules (ex: cigarette smoke) 

 

Term
Nucleotide Excision Repair 
Definition
nuclease cuts and replaces damaged stretches of DNA[image] 
Term
Telomeres 
Definition

Nucleotide sequences at the end of eukaryotic chromosomes 

Do not prevent the shortening of DNA molecules, but they do postpone the erosion of genes near the ends of DNA molecules 

It has been proposed that shortening telomeres is connected to aging

Term
Telomerase
Definition
An enzy,e that catalyzes the lengthening of telomeres
Term
Nucleoid 
Definition
The region of bacteria where the DNA is "supercoiled"
Term
Chromatin 
Definition
A complex of DNA and proteins that is found in the nucleus of eukaryotes 
Term
Histones 
Definition
Proteins that are responsible for the first level of DNA packaging in chromatin [image]
Term
10-nm fibers 
Definition

A fiber in chromatin 

DNA unwinds around histones to form nucleosome "beads"

Nucleosomes are strung together like beads on a string by linker DNA 

Term
30-nm Fiber
Definition

 A fiber in chromatin that is created by interactions between nucleosomes, causing the thinner fibers to fold into this thicker fiber

Are looped domains that attach to proteins [image]

Term
300-nm Fiber 
Definition
Fibers in chromatin formed by bundled 30-nm fibers [image]
Term
Metaphase Chromosome 
Definition

The formation of even further coiled 300nm fibers in the chromosome 

The width of a chromatid is 700nm 

Most chromatin is loosely packed in the nucleus during interphase and condenses prior to mitosis 

Term
Euchromatin 
Definition
Loosely packed chromatin 
Term
Heterochromatin 
Definition

Highly condensed regions of chromatin that occurs during interphase 

Dense packing of the heterochromatin makes it difficult for the cell to express genetic information coded in these regions 

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