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Chapter 15: Metabolism, Basic concepts and design
Intro to Metabolism
21
Biochemistry
Undergraduate 3
11/06/2012

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Term
3 major purposes that living organisms require continual input of free energy
Definition

1.-performance of mechanical energy


2.-active transport of molecules and ions


3.-synthesis of macro molecules and other biomolecules from simple precursors

Term
Phototrophs
Definition
photosynthetic organisms that obtain E by trapping light in chemical form.
Term
Chemotrophs
Definition
animals & etc. that obtain E through oxidation of carbon fuels.
Term

Basic Principles that underlie E flow in all living systems

 

Definition

1.-Fuels are degraded & large molecules constructed by metabolic pathways

2.-ATP links E releasing and E requiring pathways

3.-oxidation of C fuels power ATP formation

4.-limited # of types of rxn's and particular intermediates common to many pathways

5.-Metabolic pathways highly regulated to allow efficient use of fuels and coordinate biosynthetic processes.

Term
Metabolism
Definition
a linked series of chemical rxns that begin with a particular biomolecule and converts it to some other required biomolecule in a carefully defined fashion
Term
Intermediary metabolism
Definition
the many pathways in a cell that process a biomolecule from a start to an end point w/out generation of wasteful or harmful side products.
Term
Broad classes of metabolic pathways
Definition

1.-ones that convert E from fuels into biologically useful forms such as ATP or ion gradients

2.-ones that require inputs of E to proceed

Term

Catabolic Reactions

(Catabolism)

Definition

rxns that transform fuel into cellular E

Fuel -> CO+ H2O + Useful E

Term

Anabolic Reactions

(Anabolism)

Definition

rxns that require E

Useful E+simple precursors -> complex molecules

Term
Amphibolic Pathways
Definition

pathways that can be either anabolic or catabolic, depending on the E conditions in the cell

Term
Minimal criteria a pathway must satisfy
Definition
  1. individual rxns must be specific
  2. entire set of rxns that constitute pathway must be thermodynamically favored
Term
ΔG =
Definition

ΔG01 + RTln [C][D]

[A][B]

Term
ATP stands for
Definition
Adenosine triphosphate
Term
Nucleotide
Definition
a N purine or pyrimidine base linked to a sugar which is linked to 1+ phosphoryl groups
Term
ATP consists of 
Definition
  • Adenine
  • Ribose
  • Triphosphate unit
Term
Why ATP is an E rich molecule
Definition
it's triphosphate unit contains 2 phosphoanhydride bonds.
Term
ATP is hydrolized into
Definition
  1. adenosine diphosphate + orthophosphate
  2. adenosine monophosphate + pyrophosphate
Term
ATP - ADP cycle
Definition
fundamental mode of E exchange in biological systems.
Term
Phosphoryl-transfer potential
Definition
ability of a molecule to give up a phosphoryl group to water
Term
Important factors in phosphoryl- transfer potential
Definition
  1. Electrostatic repulsion
  2. Resonance stabilization
  3. Stabilization d/t hydration
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