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Chapter 14
BIOL 4501, University of Minnesota Duluth
9
Biology
Undergraduate 3
05/11/2015

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Term
What do restriction enzymes naturally do in prokaryotes?
Definition
Protect them from hostile foreign DNA
Term
____ restriction enzymes cleave DNA within their recognition site
Definition
Type II
Term
Six steps of molecular cloning
Definition
1) Isolation and fragmentation of source DNA with restriction enzymes
2) Insertion of DNA fragments into a cloning vector
3) Incorporation of selected DNA fragment into host cell
4) Screening of host cells for clonal insert
5) Detection and purification of desired clonal cell line
6) Production of large number of cells with desired clone to make product
Term
Maximum size of inserted DNA in bacteriophage cloning vector?
Definition
20 kb
Term
Name 4 ways genetic engineering differs from natural genetic/evolutionary mechanisms.
Definition
1) Increases size of genomes with genes that normally would never develop naturally in some species
2) Genes cross species boundaries without loss of reproductive viability
3) Speeds appearance of new characters in species compared to natural mutations
4) Man-made selection process involved instead of natural selection process
Term
The 454 pyrosequencing method is ___ times faster than Sanger sequencing
Definition
100
Term
Describe 454 sequencing
Definition
DNA broken into small ssDNA (100 bases each)
Each ssDNA immobilized to a bead and put in a separate plate well
DNA amplified to make several copies of DNA on each bead
Nucleotides flooded one by one over plate wells
Each time a nucleotide is incorporated into the complementary DNA strand pyrophoshate is released which provides energy for a light pulse
Each light pulse signals the incorporation of a base complimentary to one in original DNA at that point and DNA sequence in revealed
Sequences of small DNA sequences assembled into entire genome sequence using sequence overlaps as guides
Term
Routine size of oligonucleotides for DNA synthesis?
Definition
30-35 bases
Term
Steps in de novo synthesis of small DNA fragments?
Definition
Desired sequence submitted
First nucleotide in sequence fastened to porous glass beads
After each elongation step, reaction mixture flushed out of beads
Next steps proceed with new reaction mixture and appropriate nucleotide
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