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Chapter 13
RNA synthesis
28
Biology
Undergraduate 1
03/05/2010

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Term
Garrod's Work
Definition
inborn errors of metabolism
-evidence that genes specify proteins
Alkaptonuria
-rare genetic disease
-lacks enzyme to oxidize homogentisic acid
Gene Mutation
-associated w/absence of specific enzyme
Term
Beadle-Tatum Expericments
Definition
Exposed Neurospora spores
-to X-rays or UV rays
-induced mutations prevented metabolic production of essential molecules

Each mutant strain
-had mutation in only one gene
-each gene affected only 1 enzyme
Term
DNA to protein
Definition
information encoded in DNA
-codes sequences of amino acids in proteins

2-step process:
1. transcription
2. translation
Term
Transcription
Definition
Synthesizes messenger RNA (mRNA)
-complementary to template DNA
-specifies amino acid sequences of polypeptide chains
Term
Translation
Definition

Synthesized polypeptide chain

-specified by mRNA

-also requires tRNA and ribosomes

Codon

-sequence of 3 mRNA nucleotide bases

-specifies one amino acid

-or a start or stop signal

Term
RNA Structure
Definition
RNA nucleotides
-ribose (sugar)
-bases (uracil, adenine, guanine. cytosine)
-3 phosphates

RNA subunits
-covalently joined by 5'-->3' linkages
-form alternating sugar-phosphate backbone
Term
Genetic Code
Definition
mRNA codons
-specify a sequence of amino acids

64 codons
-61 code for amino acids
-3 codons are stop signals
Term
How is the genetic code redundant & virtually universal?
Definition
redundant
-some amino acids have more than one codon

virtually universal
-suggesting all organisms have a common ancestor
-few minor exceptions to standard code found in all organisms
Term
How are DNA replication and RNA transcription similar?
Definition
Similar enzymes
-RNA polymerase for RNA synthesis
-DNA polymerase for DNA replication

Carry out synthesis in 5'-3' direction

Use nucleotides w/3 phosphate groups

Antiparallel synthesis
-strands of DNA are antiparallel
-template DNA strand and complementary RNA strand are antiparallel (DNA template read in 3'-5' direction & RNA synthesized in 5'-3' direction)

Transcription in same except uracil base used in RNA synthesis instead of thymine in DNA replication
Term
Transfer RNA (tRNA)
Definition
located in cytosol

decoding molecule in translation

anticodon (in loop 2)
-complementary to mRNA codon
-specific for 1 amino acid

has shape, coiled and twisted over itself
Term
Aminoacyl-tRNA
Definition
enzymes that covalently bind tRNA to specific amino acid
Term
How do ribosomes function in polypeptide synthesis?
Definition
Ribosomes bring together all machinery for translation
-couple tRNAs to mRNA codons
-catalyze peptide bonds b/w amino acids
-translocate mRNA to read next codon
Term
Ribosomal Structure
Definition
each ribosome is made of 1 large ribosomal subunit & 1 small ribosomal subunit
Term
What do each subunit of ribosomes contain?
Definition
ribosomal RNA (rRNA) & many proteins
Term
Initiation
Definition
1st stage of translation

Initiation factors bind to small ribosomal subunit
Ribosomal subunit then binds to mRNA at start codon (AUG)

Initiator tRNA binds to start codon and then binds large ribosomal subunit
Term
Elongation
Definition
a cyclic process
-adds amino acids to polypeptide chains

proceeds in 5'=3' direction along mRNA

polypeptide chain grows from amino end to carboxyl end
Term
Termination
Definition
final stage of translation
-when ribosome reaches stop codon

a site binds to release factor
-which triggers the release of polypeptide chain
-translation complex dissociates
Term
Main difference b/w Eukaryotic mRNA and Bacterial mRNA
Definition
Genes and mRNA molecules are more complicated than those of bacteria
Term
Eukaryotic mRNA
Definition
after transcription, 5' cap (modified guanosine triphosphate) is added to the 5' end of mRNA molecule

Poly-A tail (adenine-containing nucleotides) may be added at 3' end of mRNA molecules
Term
Introns
Definition
noncoding regions (interrupt exons)

removed from original pre-mRNA
Term
Exons
Definition
coding regions in eukaryotic genes

spliced to produce continuous polypeptide coding sequences
Term
Retrovirus
Definition
synthesize DNA from an RNA template
-HIV-1 (virus that causes AIDS)

enzyme reverse transcriptase
-reverses flow of genetic information
Term
Effects of base substitution
Definition
may alter or destroy protein function
-missense mutation (codon change specifies a different amino acid)
-nonsense mutation (codon become a stop codon)

or may have minimal effects
-if amino acid is not altered
-if codon change specifies a similar amino acid
Term
Results of missense mutation
Definition
results in a polypeptide of normal length, but with an amino acid substitution
Term
Results of nonsense mutations
Definition
results in production of truncated (shortened) polypeptide, which is usually not functional
Term
Frameshift mutations (definition & effects)
Definition
insertion or deletion of 1 or 2 base pairs in a gene
-destroys protein function
-changes codon sequences downstream from the mutation
Term
Transposons
Definition
movable DNA sequences
-"jump" into the middle of a gene
Term
Retrotransposons
Definition
replicate by forming RNA intermediate

reverse transcriptase converts to original DNA sequence before jumping into the gene
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