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Chapter 12
Biosignaling
60
Biochemistry
Undergraduate 3
03/21/2016

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Term
specificity
Definition
achieved by precise molecular complementarity between the signal & receptor molecules & mediated by the same kinds of weak forces that mediate enzyme-substrate & antigen-antibody interactions
Term
affinity
Definition
the dissociation constant between signal & receptor which is commonly 10^-10 M or less which means that the receptor detects picomolar concentrations of a signal molecule
Term
cooperativity
Definition
a factor in receptor-ligand interactions which results in large changes in receptor activation with small changes in ligand concentration
Term
amplification
Definition
results when an enzyme associated with a signal receptor is activated & in turn catalyzes the activation of many molecules of a third enzyme & so on in an "enzyme cascade"
Term
modularity
Definition
a factor of interacting signaling proteins which allows a cell to mix & match a set of signaling molecules to create complexes with different functions or cellular locations
Term
scaffold proteins
Definition
nonenzymatic proteins; have an affinity for several enzymes that interact in cascades to bring those proteins together to ensure their interaction as specific cellular locations & at specific times
Term
desensitization
Definition
occurs when a signal is present continuously; affects the receptor system; when the stimulus falls below a certain threshold, the system again becomes sensitive
Term
integration
Definition
a feature of signal-transducing systems; the ability of the system to receive multiple signals & produce a unified response appropriate to the needs of the cell or organism
Term
6 basic receptor types
Definition
1. G protein-coupled receptors
2. receptor tyrosine kinases
3. receptor guanylyl cyclases
4. gated ion channels
5. adhesion receptors
6. nuclear receptors
Term
What is the relationship between G protein-coupled receptors (GPCRs) & guanosine nucleotide-binding protein (G protein)?
Definition
GPCRs are receptors that are closely associated with a member of the G protein family
Term
second messenger
Definition
generated by an activated enzyme; affects downstream targets
Term
adrenergic receptors
Definition
one of 4 general types (alpha 1, alpha 2, beta 1, & beta 2) that are defined by differences in their affinities & responses to a group of agonists & antagonists
Term
What is the relationship between agonists & antagonists?
Definition
agonists are structural analogs that bind to a receptor & mimic the effects of its natural ligand; antagonists are analogs that bind the receptor without triggering the normal effect & thereby block the effects of agonists including the biological ligand
Term
heptahelical receptors
Definition
the alternative name for GPCRs because they all are integral proteins with seven hydrophobic, helical regions of 20 to 28 amino acid residues that span the plasma membrane seven times
Term
stimulatory G protein (Gs)
Definition
a G protein that activates its effector
Term
cAMP-dependent protein kinase (protein kinase A) (PKA)
Definition
allosterically activated by cyclic AMP
Term
cyclic nucleotide phosphodiesterase
Definition
hydrolyzes cAMP to 5'-AMP
Term
beta-arrestin
Definition
a protein that gets a binding site when receptors are phosphorylated; its binding effectively prevents further interaction between the receptor & the G protein
Term
G protein-coupled receptor kinases (GRKs)
Definition
a protein family which includes proteins like beta-adrenergic receptor kinase; all of this family phosphorylates GPCRs on their carboxyl-terminal cytoplasmic domains & play roles in desensitization & resensitization of their receptors
Term
cAMP response element binding protein (CREB)
Definition
phosphorylated by the catalytic subunit of PKA when that subunit moves into the nucleus; alters the expression of specific genes regulated by cAMP
Term
inhibitory G protein (Gi)
Definition
activated by the binding of somatostatin to its receptor; a structurally homologous protein to Gs which inhibits adenylyl cyclase & lowers [cAMP]
Term
adaptor proteins
Definition
confine the signaling process to a specific region of the cell to allow for so many types of signals to be mediated by a single second messenger; noncatalytic proteins that hold together other protein molecules that function in concert
Term
AKAPs (A kinase anchoring proteins)
Definition
multivalent adaptor proteins (one part binds to the R subunits of PKA & another to a specific structure in the cell, confining the PKA to the vicinity of that structure)
Term
phospholipase C (PLC)
Definition
a class of GPCRs that are coupled through a G protein to a plasma membrane; specific for the membrane phospholipids phosphatidylinositol 4,5-bisphosphate (PIP2)
Term
2 potent second messengers whose production is catalyzed by the activation of PIP2-specific PLC (activated by an activated Gq)
Definition
1. diacylglycerol
2. inositol 1,4,5-triphosphate (IP3)
Term
protein kinase C (PKC)
Definition
activated by elevated [Ca2+]
Term
calmodulin (CaM)
Definition
an acidic protein with four high-affinity Ca2+-binding sites
Term
receptor tyrosine kinases (RTKs)
Definition
a large family of plasma membrane receptors with intrinsic protein kinase activity that transduce extracellular signals by a mechanism fundamentally different from that of GPCRs
Term
SH2 domain
Definition
where a P-Tyr residue of IRS-1 binds; part of the protein Grb2
Term
What is the relationship between "ras" & "small G proteins"
Definition
Ras is the prototype of a family of small G proteins that mediate a wide variety of signal transductions
Term
MAPK cascades
Definition
mediate signaling initiated by a variety of growth factors (ex. platelet-derived growth factor & epidermal growth factor)
Term
cytokine
Definition
the developmental signal; ex) erythropoietin (a 165 amino acid protein produced in the kidneys)
Term
guanosine 3',5'-cyclic monophosphate (cyclic GMP, cGMP)
Definition
a second messenger that is created when activated receptor enzymes called guanylyl cyclases convert GTP into this
Term
cGMP-dependent protein kinase (protein kinase G) (PKG)
Definition
mediates many of the actions of cGMP in animals
Term
atrial natriuretic factor (ANF)
Definition
the peptide hormone which activates guanylyl cyclase in the kidney
Term
guanylin
Definition
a peptide which activates the receptor guanylyl cyclase in the plasma membrane of the epithelial cells of the intestine
Term
NO synthase
Definition
a Ca2+ dependent enzyme that produces nitric oxide from arginine
Term
angina pectoris
Definition
relieved by NO-induced relaxation of cardiac muscle (same response brought about by nitroglycerin & other nitrovasodilators); the pain caused by contraction of a heart deprived of O2 because of blocked coronary arteries
Term
voltage-gated Na+ channels
Definition
exist along the entire length of the axon; closed when the membrane is at rest but open briefly when the membrane is depolarized locally in response to acetylcholine
Term
voltage-gated K+ channels
Definition
distributed along the axon; open a split second after voltage-gated Na+ channels in response to the depolarization when nearby Na+ channels open
Term
voltage-gated Ca2+ channels
Definition
at the distal end of the axon; open when the wave of depolarization & repolarization (caused by the activity of Na+ & K+ channels) arrives to trigger the release of the neurotransmitter acetylcholine (which carries the signal to another neuron or to a muscle fiber
Term
nicotinic acetylcholine receptor
Definition
mediates the passage of the signal from an electrically excited neuron at some types of synapses & at neuromuscular junctions to trigger muscle contraction
Term
ionotropic
Definition
receptors that are themselves ion channels; different from receptors that generate second messengers
Term
rhodopsin
Definition
an integral protein with seven membrane-spanning alpha helices (the characteristic GPCR architecture)
Term
opsin
Definition
covalently attached to the light-absorbing pigment 11-cis-retinal; the protein component of rhodopsin whose covalent attachment occurs through a Schiff base to a Lys residue
Term
transducin
Definition
a protein that interacts with rhodopsin when rhodopsin is in its excited conformation; exists close to rhodopsin on the cytoplasmic face of the disk membrane
Term
recoverin
Definition
a Ca2+-binding protein; inhibits rhodopsin (but this inhibition is relieved when [Ca2+] drops after illumination
Term
arrestin 1
Definition
a protein which binds the phosphorylated carboxyl-terminal domain of rhodopsin; prevents further interaction between activated rhodopsin & transducin
Term
receptor potential
Definition
a small depolarization produces when there is an influx of Na+ & Ca2+ due to opening of the cAMP-gated Na+ & Ca2+ channels of the ciliary membrane
Term
What is the relationship between cyclin & cyclin-dependent protein kinase (CDK)?
Definition
Some kinases are heterodimers with a regulatory subunit (cyclin) & a catalytic subunit (cyclin-dependent protein kinase)
Term
ubiquitin
Definition
a protein brought together with the cyclin by the protein DBRP to initiate the process of cyclin degradation
Term
proteasome
Definition
a proteolytic enzyme complex whose signal comes from ubiquitin molecules being appended; degrades cyclin
Term
growth factors
Definition
an extracellular signal that regulates synthesis of E2F; works with cytokines in such a way that they are essential compounds for the division of mammalian cells in nature
Term
retinoblastoma protein (pRb)
Definition
a very important CDK substrate; participates in a mechanism that arrests cell division in G1 when DNA damage is detected
Term
What is the relationship between oncogenes & proto-oncogenes?
Definition
oncogenes were originally discovered in tumor-causing viruses, then later found to be derived from genes in the animal host cells (proto-oncogenes) which encode growth-regulating proteins
Term
tumor suppressor genes
Definition
encode proteins that normally restrain cell division
Term
programmed cell death (apoptosis)
Definition
the process through which many cells can precisely control the time of their own death
Term
hormone response elements (HREs)
Definition
specific regulatory sequences in DNA with which a receptor protein can interact when hormone binding triggers changes in the receptor's conformation
Term
tamoxifen
Definition
a drug that demonstrate the specificity of the steroid-receptor interaction; used to treat breast cancer
Term
mifepristone (RU486)
Definition
a drug that acts as a steroid analog; binds to the progesterone receptor & blocks hormone actions essential to implantation of the fertilized ovum in the uterus to act as a contraceptive
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