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Chapter 12 and 13
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51
Biology
Undergraduate 1
11/03/2010

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Term
During most of the elongation cycle, the growing peptide is attached to a tRNA in the
Definition
P site
Term
In 1909, British physician Archibald Garrod first suggested that genes dictate phenotypes through the synthesis of ________ that catalyze specific chemical processes in the cell.
Definition
enzymes
Term
A particular eukaryotic protein is 300 amino acids long. Which of the following would be the minimum number of nucleotides in the DNA to code for the amino acid sequence in the protein?
Definition
900
Term
Nowadays, biochemists don't have to irradiate organisms to produce (random) mutations, but can go into the DNA and make specifically desired point mutations. For example, Dr. Andy Goldberg of Oakland's Eye Research Institute has specifically mutated the gene that codes for the 346-AA containing peripherin protein of the retina. The value of such studies would most likely be:
Definition
c. to analyze the role of specific amino acids in the structure and function of peripherin proteins
Term
A so-called 5' cap is applied to:
Definition
eukaryotic pre-mRNA's
Term
Elongation of a polypeptide chain during translation involves the formation of a peptide bond between
Definition
a polypeptide in the P site and the amino acid carried on a tRNA in the A site
Term
Several different kinds of RNA participate in protein synthesis. But only one of the RNA's depends on which gene is being expressed. Which RNA is that?
Definition
mRNA
Term
DNA and RNA differ in two of these three ways. Which one is phony?
Definition
DNA contains phosphate and RNA contains sulfate
Term
Charles Yanofky's work on the Trp gene of E. coli showed that ___ and ___ are co-linear.
Definition
The gene ... its protein product
Term
The one-gene-one-enzyme hypothesis of Beadle and Tatum was reformed as:
Definition
one-gene-one-polypeptide
Term
AAA and AAG both code for lysine. This demonstrates
Definition
a redundancy or degeneracy in the genetic code
Term
The promoter region in eukaryotic transcription is ___ from the gene.
Definition
upstream
Term
Nowadays, biochemists don't have to irradiate organisms to produce (random) mutations, but can go into the DNA and make specifically desired point mutations. For example, Dr. Andy Goldberg of Oakland's Eye Research Institute has specifically mutated the gene that codes for the 346-AA containing peripherin protein of the retina. The gene for peripherin might well be larger due to the presence of
Definition
introns
Term
Where is eukaryotic mRNA translated?
Definition
in the cytoplasm
Term
Initiation of protein synthesis begins with
Definition
a methionyl-tRNA binding to an AUG and to the P site of the ribosome
Term
All of the following are differences between RNA and DNA EXCEPT which?
Definition
DNA contains base-pairing between complementary bases, whereas RNA molecules do not.
Term
Which of the following best represents the central dogma of gene expression and information flow in molecular biology?
Definition
During transcription, DNA codes for RNA, which codes for polypeptides during translation.
Term
In order for genotype (the set of genetic instructions) to be converted into phenotype (the structure and behavior of the organism), which of the following is necessary?
Definition
a. DNA --> RNA
b. RNA --> protein
c. Protein --> metabolism
d. All of the others
Term
Researchers have now sequenced the complete mitochondrial genome of a 38,000-year-old Neanderthal thighbone found in a cave in Croatia. The new sequence contains 16,565 DNA base pairs, representing 13 genes, making it the longest stretch of Neanderthal DNA ever examined. Would you predict that Neanderthal DNA would be expressed using the same triplet genetic code as the one we have studied in this class?
Definition
Sure, if tobacco and fireflies share the same code, so would two hominids.
Term
Transcription is the name for the process by which
Definition
d. the sequence of bases in DNA determines the sequence of bases in RNA
Term
Which of the following is NOT true of RNA processing?
Definition
. Introns are joined together before the mRNA leaves the nucleus
Term
In a test-tube, Asn-tRNAasn synthetase is used to attach asparagines to tRNAasn. Then the loaded asparagines are deaminated (amino group removed) to form aspartic acid. When these Asp-tRNAasn are added to an in vitro protein synthesizing system
Definition
Asp will be inserted where Asn has been specified
Term
The wobble phenomenon
Definition
allows 61 codons to be read by less than 61 tRNA's due to a wobble in the base-pairing rules
Term
Nowadays, biochemists don't have to irradiate organisms to produce (random) mutations, but can go into the DNA and make specifically desired point mutations. For example, Dr. Andy Goldberg of Oakland's Eye Research Institute has specifically mutated the gene that codes for the 346-AA containing peripherin protein of the retina. Given the size of the peripherin gene, how many bases would be in the coding region of its mRNA?
Definition
1038 bases
Term
The synthesis of RNA off of DNA is called:
Definition
transcription
Term
Alternative RNA splicing makes possible:
Definition
e. the generation of multiple types of mRNA from the same pre-mRNA
Term
Which of the following is NOT true of RNA processing?
Definition
Introns are joined together before the mRNA leaves the nucleus
Term
Initiation of protein synthesis begins with
Definition
a methionyl-tRNA binding to an AUG and to the P site of the ribosome
Term
Protein synthesis occurs when peptide bonds are formed on cellular organelles called:
Definition
ribosomes
Term
Researchers have now sequenced the complete mitochondrial genome of a 38,000-year-old Neanderthal thighbone found in a cave in Croatia. The new sequence contains 16,565 DNA base pairs, representing 13 genes, making it the longest stretch of Neanderthal DNA ever examined. Would you predict that Neanderthal mitochondrial DNA would have the same 0.34 nm and 3.4 nm periodicities that the DNA in Rosy Franklin's study
Definition
Yes, because they would share the same basic chemical principles
Term
How do eukaryotic pre-mRNA's and mRNA's differ?
Definition
Eukaryotic mRNA's have a 5' cap, a 3' poly A tail, and no introns.
Term
The codon CAG specifies the amino acid glutamine. Therefore the anticodon in the glutamyl-tRNA could be:
Definition
(3')-GUC-(5')
Term
Elongation of a polypeptide chain during translation involves the formation of a peptide bond between
Definition
a polypeptide in the P site and the amino acid carried on a tRNA in the A site
Term
Researchers have now sequenced the complete mitochondrial genome of a 38,000-year-old Neanderthal thighbone found in a cave in Croatia. The new sequence contains 16,565 DNA base pairs, representing 13 genes, making it the longest stretch of Neanderthal DNA ever examined. Why did the researchers choose to sequence mitochondrial DNA instead of nuclear DNA?
Definition
Because it presumably is present in many more copies per cell than nuclear DNA
Term
In a test-tube, Asn-tRNAasn synthetase is used to attach asparagines to tRNAasn. Then the loaded asparagines are deaminated (amino group removed) to form aspartic acid. When these Asp-tRNAasn are added to an in vitro protein synthesizing system
Definition
Asp will be inserted where Asn has been specified
Term
The default state of most eukaryotic cell genes is
Definition
off
Term
In the absence of lactose,
Definition
The lac repressor binds to the lac operator, blocking RNA polymerase activity
Term
What does the operon model attempt to explain?
Definition
The control mechanism of gene expression in bacteria
Term
Activators, general transcription factors, RNA polymerase, the TATA box are all part of the mechanism of:
Definition
eukaryotic transcription
Term
Helix-turn-helix, zinc finger, and leucine zipper are all:
Definition
protein structures well adapted to binding to specific regions of DNA
Term
The most important level of eukaryotic gene regulation is:
Definition
the level of transcription, since the default state of genes is OFF
Term
These three kinds of human cells - neuron, skeletal muscle, and skin - differ in:
Definition
a. the selection of genes that are transcribed
b. their cell morphology
c. the enzymes the cells contain
d. all of the other answers
Term
What percentage of its functional genes does a typical human cell express at any one time?
Definition
5-20%
Term
Will an E. coli cell growing in a medium containing lactose and glucose express the three genes of the lac operon?
Definition
No, because glucose indirectly limits CAP binding to the lac promoter
Term
Helix-turn-helix, zinc finger, and leucine zipper are all:
Definition
protein structures well adapted to binding to specific regions of DNA
Term
Although the distal control elements called enhancers may be thousands of bases upstream of a promoter, they are able to control transcription because ___ bind to both the enhancer and the promoter, drawing them together and initiating transcription.
Definition
activators
Term
Distal and proximal elements, activators, and DNA bending protein are all involved in
Definition
eukaryotic transcription
Term
The Human Genome Project has estimated the size of the human genome as
Definition
23000 genes
Term
All of the following consist of a sequence of nucleotide bases except which?
Definition
a. Repressor.
b. Structural gene.
c. Promoter.
d. Regulator gene.
e. Operator.
answer...represor!
Term
Chromosomes are loosened, and transcription is thereby aided, by
Definition
Acetylation of histones
Term
in his experiment on the Trp gene of E.coli, Yanofsky showed a colinearity between:
Definition
the sequence of mutation sites in the Trp gene and the sequence of altered amino acids in the Trp protein.
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