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Chapter 1
Intro
12
Biology
Undergraduate 4
02/02/2014

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Term
Describe the suggested origin of cells
Definition
3.8 billion years ago
-spontaneous process
-Earth contained CO2 and N2 with some H2, H2S, and CO
-little or no free O2
Term
Describe the Miller experiment
Definition
created to demonstrated spontaneous formation of organic molecules

-1950 Stanley Miller
-discharge of electric sparks into mixture of H2, CH4, NH3 with water
-several amino acids formed (A,D,E,G) and urea, lactic, acetic, and formic acids

Problems:
1. not all 20 AA
2. no ATP
3. no 02 in experiment but there was some in atmosphere
Term
Describe RNA and self replication
Definition
-1980 Atlman and Cech
-RNA is capable of self catalyzation
-beginning of genetic info= RNA world
Term
Describe origins of cells and phospholipids
Definition
-first cell believed to have originated by enclosure of RNA by phospholipids

amphipathic- water soluble/insoluble
hydrophobic- carbon
hydrophilic- phosphate
Term
Describe free energy and entropy
Definition
G=H-TS
-spontaneous occurs when -G
-entropy is maximized when contact in minimized
Term
Describe the emergence of present day metabolism
Definition
1. Glycolysis
2. Photosynthesis
3. Oxidative metabolism

-first bacteria used H2S to convert CO2 to organic molecules
-H20 evolved later leading to free oxygen
-02 allowed oxidative metabolism
Term
Describe the following organelles

1. Mitochondria
2. Chloroplasts
3. Lysozymes/Peroxiomes
4. Vacuoles
5. ER
6. Golgi
7. Cytoskeleton
Definition
1. oxidative metabolism
2. photosynthesis
3. special metabolic breakdown
4. storage, metabolism
5. processing and transport of proteins and synthesis of lipids
6. proteins further processed and transported
7. network of protein filaments that provide framework, determine shape and organization, movement, division
Term
Describe the following contributors to cell biology

1. Hooke
2. Leeuwonhoek
3. Schleiden and Schwann
Definition
1. first to observe cell in 1665
2. observed variety of cells (blood, bacteria)
3. 1838 cell theory: all things come from other cells
-not de novo
Term
Describe the following microscopes:

1. Light
2. Bright field
3. Phase contrast/Differential Interference
4. Fluorescence
5. FRAP
6. Confocal
Definition
1. 1000x
2. light shines directly through, cells are fixed and stained
-not living
3. convert variations in density or thickness to differences in contrast
4. labels molecule and emits at different wavelength
-GFP
5. GRP region is bleached with light and fluorescence recovers over time
-used to study rate of protein movement
6. increases contrast and detail by examining at single point
Term
Describe Resolution
Definition
Resolution=0.61(lambda)/NA

Numerical Aperture=NA=n sin alpha

Max for light microscope = 0.22 um
Term
Describe the following Electron microscopes

1. Transmission
2. Electron tomography
3. Metal shadowing
4. Freeze fracturing
5. Scanning
Definition
1. specimens fixed and stained with heavy metals
2. 3D image put together by 2D pictures
3. sprayed with thin layer of metal at angle to produce shadow
4. frozen in nitrogen and cut with knife
-used for inner membrane viewing
5. outside layer covered in metal
-scans and make external 3D image
Term
Describe sub-cellular fractioning

1. Differential centrifugation
2. Density gradient
3. Velocity
4. Equilibrium
Definition
1. organelles can be isolated using various speeds and times when centrifuging
-larger deposit sooner (ribosomes last)
2. greater purity achieved by using denser solution such as sucrose
3. starting material layered on top, move down at different rates due to size
4. separated based on buoyancy
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