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Chapter 11
Regulation of genes in bacteria
14
Biology
Undergraduate 2
11/11/2013

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Term
promoter
Definition
RNA polymerase binds to it
Term
operator
Definition
binding site for repressor
Term
sequence specific regulatory proteins
Definition
repressors or activators
Term
positive control
Definition
requires presences of bound protein
help - typically upstream of promoter (i.e. activator)
Term
negative control
Definition
repressor prevented from binding (i.e. lactose)
-inhibiting - typically downstream of promoter
Term
allosteric site
Definition
where the effector binds
-gives rise to the structural change of the protein
Term
allosteric effectors
Definition
control the ability of activator or repressor proteins to bind to their DNA target sites
Term
DNA-binding domain
Definition
alloteric site sets this in functional or non-functional mode
Term
attenuation
Definition
premature termination of transcription - second control mechanism that exists to negatively control transcription
which can fold back on itself, forming a stem-and-loop structure that blocks the RNA polymerase from advancing along the DNA --> has to be 3rd and 4th region folding together, hairpin-loop only works if there is a UUUUU tail right afterward - causes RNA to hall off (termination)

-when tryptophan is present: 3&4 bind loop which terminates transcription
-when tryptophan is low: 2&3 bind because ribosome is stalled at trp codons-transcription continues
Term
leader sequence
Definition
introductory region of the mRNA → includes the attenuator region, which can fold back on itself, forming a stem-and-loop structure that blocks the RNA polymerase from advancing along the DNA.
Term
operon
Definition
a segment of DNA that encodes a multigenic mRNA as well as an adjacent common promoter and regulatory region
Term
inducer
Definition
something that allosterically inactivates the repressor (i.e. lactose)
Term
cAMP
Definition
binds to CAP
low when glucose is present
high when glucose is not <- necessary for activation of lac operon
Term
CAP
Definition
when bound to DNA it physically interacts with RNA polymerase and increases that enzymes affinity for the lac promoter
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