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Ch. 9,10,12,13
Cells
126
Biology
Undergraduate 1
11/25/2012

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Term
Fermentation
Definition
A catabolic process that makes a limited amount of ATP from glucose without an electron transport chain and that produces a characteristic end product, such as ethyl alcohol or lactic acid
Term
Aerobic Respiration
Definition
A catabolic pathway for organic molecules, using oxygen as the final electron acceptor in an electron transport chain and ultimately producing ATP.  This is the most efficient catabolic pathway and is carried out in most eukaryotic cells and many prokaryotic organisms.
Term
Cellular Respiration
Definition
The catabolic pathways of erobic and anaerobic respiration, which break down organic molecules and use an electron transport chain for the production of ATP.
Term
Redox Reaction
Definition
A chemical reaction involving the comlete or partial transfer of one or more electrons from one reactant to another; short for reduction-oxidation reaction.
Term
Oxidation
Definition
The complete or partial loss of electrons from a substance involved in a redoxreaction.
Term
Reduction
Definition
The complete or partial addition of electrons to a substance involved in a redox reaction.
Term
Reducing Agent
Definition
The electron donor in a redox reaction.
Term
Oxidating Agent
Definition
The electron acceptor in a redox reaction.
Term
NAD+
Definition
Nicotinamide adenine dinucleotide, a coenzyme that cycles easily between oxidized and reduced states, thus acting as an electron carrier.
Term
Electron Transport Chain
Definition
A sequence of elecrton carrier molecules that shuttle electrons down a series of redox reactions that release energy used to make ATP.
Term
Glycolysis
Definition
A series of reactions that ultimately splits glucose into pyruvate.  Glycolysis occurs in almost all living cells, serving as the starting point for fermentation or cellular respiration.
Term
Citric Acid Cycle
Definition
A chemical cycle involving eight steps that completes the metabolic breakdown of glucose molecules begun in glycolysis by oxidizing acetyl CoA to carbon dioxide; occurs within the mitochondrion ineukaryotic cells and in the cytosol of prokaryotes; together with pyruvate oxidation, the second major stage in cellular respiration.
Term
Oxidative Phosphorylation
Definition
The production of ATP using energy derived from the redox reactions of an electrontransport chain; the third major stage of cellular respiration.
Term
Substrate-level Phosphorylation
Definition
The enzyme-catalyzed formation of ATP by direct transfer of a phosphate group to ADP from an intermediate substrate in catabolism.
Term
Acetyl CoA
Definition
Acetyl coenzyme A; the entry compound for the citric acid cycle in cellular respiration, formed from a fragment of pyruvate attached to a coenzyme.
Term
Cytochrome
Definition
An iron-containing protein that is a component of electron transport chains in the mitochondria and chloroplasts of eukaryotic cells and the plasma membranes of prokaryotic cells.
Term
ATP Synthase
Definition
A complex of several membrane proteins that functions in chemiosmosis with adjacent electron transport chains, using the energy or a hydrogen ion (protons) concentration gradient to make ATP. ATP Synthases are found in the inner mitochondrial membranes of eukaryotic cells and in the plasma membranes of prokaryotes.
Term
Chemiosmosis
Definition
An energy-coupling mechanism that uses energy stored in the form of a hydrogen ion gradient across a membrane to drive cellular work, such as the synthesis of ATP. Under aerobic conditions, most ATP synthesis in cells occurs by chemiosmosis.
Term
Proton-motive Force
Definition
The potential energy stored in the form of a proton electrochemical gradient, generated by the pumping of hydrogen ions across a biological membrane during chemiosmosis.
Term
Alcohol Fermentation
Definition
Glycolysis followed by the reduction of pyruvate to ethyl alcohol, regenerating NAD+ and releasing carbon dioxide.
Term
Lactic Acid Fermentation
Definition
Glycolysis followed by the reduction of pyruvate to lactate, regenerating NAD+ with no release of carbon dioxide.
Term
Obligate Anaerobe
Definition
An organism that only carries out fermentation or anaerobic respiration. Such organisms cannot use exygen and in fact may be poisoned by it.
Term
Facultative Anaerobe
Definition
An organism that makes ATP by aerobic respiration if oxygen is present but that switches to anaerobic respiration or fermentation if oxygen is not present.
Term
Beta Oxidation
Definition
A metabolic sequence that breaks fatty acids down to two-carbon fragments that enter the citric acid cycle as acetyl CoA.
Term
Photosynthesis
Definition
The conversion of light energy to chemical energy that is stored in sugars or other organic compounds; occurs in plants, algae, and certain prokaryotes.
Term
Autotroph
Definition
An organism that obtains organic food molecules without eating other organisms or substances derived from other organisms. Autotrophs use energy from the sun or from oxidation of inorganic substances to make organic molecules from inorganic ones.
Term
Heterotroph
Definition
An organism that obtains organic food molecules by eating other organisms or substances derived from them.
Term
Mesophyll
Definition
Leaf cells specialized for photosynthesis. In C, and CAM plants mesophyll cells are located between the upper and lower epidermis; in C plants they are located between the bundle-sheath cells and the epidermis.
Term
Stroma
Definition
The dense fluid within the chiroplast surrounding the thylakoid membrane and containing ribosomes and DNA; involved in the synthesis of organic molecules from carbondioxide and water.
Term
Thylakoid
Definition
A flattened, membranous sac inside a chloroplast. Thlyakoids often exist in stacks called grana that are interconnected; their membranes contain molecular "machinery" used to convert light energy to chemical energy.
Term
Chlorophyll
Definition
A green pigment located in membranes within the chloroplasts of plants and algae and in the membranes of certain prokaryotes. Chlorophyll a participates directly in the light reactions, which convert solar energy to chemical energy.
Term
Light Reactions
Definition
The first of two major stages in photosynthesis. These reactions, which occur on the thylakoid membranes of the chloroplast or on membranes of certain prokaryotes, convert solar energy to the chemical energy of ATP and NADPH, releasing oxygen in the process.
Term
Calvin Cycle
Definition
The second of two major stages in photosynthesis involving fixation of atmospheric CO2 and reduction of the fixed carbon into carbohydrate.
Term
NADP+
Definition
Nocotinamide adenine dinucleotide phosphate, an electron acceptor that, as NADPH, temporarily stores energized electrons produced during the light reactions.
Term
Photophosphorylation
Definition
The process of generating ATP from ADP and phosphate by means of chemiosmosis, using a proton-motive force generated across the thylakoid membrane of the chloroplast or the membrane of certain prokaryotes during the light reactions of photosynthesis.
Term
Carbon Fixation
Definition
The initial incorporation of carbon from CO2 into an organic compound by an autotrophic organism.
Term
Wavelength
Definition
The distance between crests of waves, such as those of the electromagnetic spectrum.
Term
Electromagnetic Spectrum
Definition
The entire spectrum of electromagnetic radiation, ranging in wavelength from less than a nanometer to more than a kilometer.
Term
Visible Light
Definition
That portion of the electromagnetic spectrum that can be detected as various colors by the human eye, ranging in wavelength from about 380 nm to about 750 nm.
Term
Photon
Definition
A quantum, or discrete quantity, of light energy that begaves as if it were a particle.
Term
Spectrophotometer
Definition
An instrumentn that measures the proportions of light of different wavelengths absorbed and transmitted by a pigment solution.
Term
Absorption Spectrum
Definition
The range of a pigment's ability to absorb various wavelenths of light; also a graph of such a range.
Term
Chlorophyll a 
Definition
A photosynthetic pigment that participates directly in the lighth reactions, which convert solar energy to chemical energy.
Term
Action Spectrum
Definition
A graph that profiles the relative effectiveness of different wavelengths of radiation in driving a particular process.
Term
Chlorophyll b
Definition
An accessory photosynthetic pigment that transfers energy to chlorophyll a 
Term
Carotenoid
Definition
An accessory pigment, either yellow or orange, in the chloroplasts of plants and in some prokaryotes. By absorbing wavelengths of light that chlorophyll cannot, carotenoids broaden the spectrum of colors that can drive photosynthesis.
Term
Photosystem
Definition
A light-capturing unit located in the thylakoid membrane of the chloroplast or in the membrane of some prokaryotes, consisting of a reaction-center complex surrounded by numerous light-harvesting complexes. These are two types of photosystems, I and II; they absorb light best at different wavelengths.
Term
Reaction-Center Complex
Definition
A complex of proteins associated with a special pair of chlorophyll a molecules and a primary electron acceptor. Located centrally in a photosystem, this complex triggers the light reactions of photosynthesis. Excited by light energy, the pair of chlorophylls donates an electron to the primary electron acceptor, which passes an electron to an electron transport chain.
Term
Light-Harvesting Complex
Definition
A complex of proteins associated with pigment molecules that captures light energy and transfers it to reaction-center pigments in a photostream.
Term
Primary Electron Acceptor
Definition
In the thylakoid membrane of a chloroplast or in the membrane of some prokaryotes, a specialized molecule that shares the reaction-center complex witha  pair of chlorophyll a molecules and that accepts an electron from them.
Term
Photosystem II (PS II)
Definition
One of two light-capturing units in a chloroplast's thylakoid membrane or in the membrane of some prokaryotes; it has two molecules of P680 chlorophyll a at its reaction center.
Term
Photosystem I (PS I)
Definition
A light-capturing unit in a chloroplast's thylakoid membrane or in the membrane of some prokaryotes; it has two molecules of P700 chlorophyll a at its reaction center.
Term
Cyclic Electron Flow
Definition
A route of electron flow during the light reactions of photosynthesis that involves only photosystem I and that produces ATP but nod NADPH or O2.
Term
Glyceraldehyde 3-Phosphate (G3P)
Definition
A three-carbon carbohydrate that is the direct product of the calvin cycle; it is also an intermediate in glycolysis.
Term
Rubisco
Definition
Ribulose bisphosphate (RuBP) carboxylase, the enzyme that catalyzes the first step of the Calvin cycle (the addition of CO2 to RuBP)
Term
C3 Plant
Definition
A plant that uses the Calvin cycle for the initial steps that incorporate CO2 into organic material, forming a three-carbon compound as the first stable intermediate.
Term
Photorespiration
Definition
A metabolic pathway that consumes oxygen and ATP, releases carbon dioxide, and decreases photosynthetic output. Photorespiration generally occurs on hot, dry, bright days, when stomata close and the O2/CO2 ratio in the leaf increases, favoring the binding of O2 rather than CO2 by rubisco.
Term
Cell Division
Definition
The reproduction of cells.
Term
Cell Cycle
Definition
An ordered sequence of events in the life of a cell, from its origin in the division of a parent cell until its own division into two. The eukaryotic cell cycle is composed of interphase and M phase.
Term
Genome
Definition
The genetic material of an organism or virus; the complete complement of an organism's or virus's genes along with its noncoding nucleic acid sequences.
Term
Chromosome
Definition
A cellular structure carrying genetic material, found in the nucleus of eukaryotic cells. Each chromosome consists of one very long DNA molecule and associated proteins.
Term
Chromatin
Definition
The complex of DNA and proteins that makes up eukaryotic chromosomes. When the cell is not dividing, chromatin exists in its dispersed form, as a mass of very long, thin fibers that are not visible with a light microscope.
Term
Somatic Cell
Definition
Any cell in a multicellular organism except a sperm or egg or their precursors.
Term
Gametes
Definition
A haploid reproductive cell, such as an egg or sperm. Gametes unite during sexual reproduction to produce a diploid zygote.
Term
Sister Chromatids
Definition
Two copies of a duplicated chromosome attached to each other by proteins at the centromere and, sometimes, along the arms. While joined, two sister chromatids make up one chromosome. Chromatids are eventually separated during mitosis or meiosis II.
Term
Centromere
Definition
In a duplicated chromosome, the region on each sister chromatid where they are most closely attached to each other by proteins that bind to specific DNA sequences; this close attachment cuases a constriction in the condensed chromosome.
Term
Mitosis
Definition
A process of nuclear division in eukaryotic cells conventionally divided into five stages: prophase, prometaphase, metaphase, anaphase, and telophase. Mitosis conserves chromosome number by allocating replicated chromosomes equally to each of the daughter nuclei.
Term
Cytokinesis
Definition
The division of the cytoplasm to form two separate daugter cells immediately after mitosis, meiosis I, or meisis II.
Term
Mitotic (M) Phase
Definition
The phase of the cell cycle that includes mitosis and cytokinesis.
Term
Interphase
Definition
The period in the cell cycle when the cell is not divising. During interphase, cellular metabolic activity is high, chromosomes and organelles are duplicated, and cell size may increase. Interphase often accounts for about 90% of the cell cycle.
Term
G1 Phase
Definition
The first gap, or growth phase, of the cell cycle, consisting of the portion of interphase before DNA synthesis begins.
Term
S Phase
Definition
The synthesis phase of the cell cycle; the portion of interphase during which DNA is replicated.
Term
G2 Phase
Definition
The second gap, or growth phase, of the cell cycle, consisting of the portion of interphase after DNA synthesis occurs.
Term
Prophase
Definition
The first stage of mitosis, in which the chromatin condenses into discrete chromosomes visile with a light microscope, the mitotic spindle begins to form, and the nucleolus disappears but the nucleus remains intact.
Term
Prometaphase
Definition
The second stage of mitosis, in which the nuclear envelope fragments and the spindle microtubules attach to the kinetochores of the chromosomes.
Term
Metaphase
Definition
The third stage of mitosis, in which the spindle is complete and the chromosomes, attached to microtubules at their kinetochores, are all aligned at the metaphase plate.
Term
Anaphase
Definition
The fourth stage of mitosis, in which the chromatids of each chromosome have separated and the daughter chromosomes are moving the the poles of the cell.
Term
Telophase
Definition
The fifth and final stage of mitosis, in which daughter nuclei are forming and cytokinesis has typically begun.
Term
Mitotic Spindle
Definition
An assemblage of microtubules and associated proteins that is involved in the movement of chromosomes during mitosis.
Term
Centrosome
Definition
A structure present in the cytoplasm of animal cells that functions as a microtubule-organizing center and is important during cell division. A centrosome has two centrioles.
Term
Aster
Definition
A radial array of short microtubules that extends from each centrosome toward the plasma membrane in an animal cell undergoing mitosis.
Term
Kinetochore
Definition
A structure of proteins attached to the centromere that links each sister chromatid to the mitotic spindle.
Term
Metaphase Plate
Definition
An imaginary structure located at a plane midway between the poles of a cell in metaphase on which the centromeres of all the duplicated chromosomes are located.
Term
Cleavage
Definition

The process of cytokinesis in animal cells, characterized by pinching of the plasma membrane

 

The succession of rapid cell divisions without significant growth during early embryonic development that converts the zygote to a ball of cells.

Term
Cleavage Furrow
Definition
The first sign of cleavage in an animal cell; a shallow groove around the cell in the cell surface near the old metaphase plate.
Term
Cell Plate
Definition
A membrane-bounded, flattened sac located at the midline of a dividing plant cell, inside which the new cell wall forms during cytokinesis.
Term
Binary Fission
Definition
A method of asexual reproduction by "division in half." In prokaryotes, binary fission does not involve mitosis, but in single-celled eukaryotes that undergo binary fission, mitosis is part of the process.
Term
Origin of Replication
Definition
Site where the replication of a DNA molecule begins, consisting of a specific sequence of nucleotides.
Term
Cell Cycle Control System
Definition
A cyclically operating set of molecules in the eukaryotic cell that both triggers and coordinates key events in the cell cycle.
Term
Checkpoint
Definition
A control point in the cell cycle where stop and go-ahead signals can regulate the cycle.
Term
G0 Phase
Definition
A nondividing state occupied by cells that have left the cell cycle, sometimes reversibly.
Term
Cyclin
Definition
A cellular protein that occurs in a cyclically fluctuating concentration and that plays an important role in regulating the cell cycle.
Term
Cyclin-Dependent Kinase (Cdk)
Definition
A protein kinase that is active only when attached to a particular cyclin.
Term
MPF
Definition
Maturation-promoting factor; a protein complex required for a cell to progress from late interphase to mitosis. The active form consists of cyclin and a protein kinase.
Term
Growth Factor
Definition

A protein that must be present in the extracellular environment for the growth and normal development of certain types of cells.

 

A local regulator that acts on nearby cellsto stimulate cell proliferation and differentiation.

Term
Transformation
Definition

The conversion of a normal animal cell to a cancerous cell

 

A change in genotype and phenotype dur to the assimilation of external DNA by a cell. When the external DNA is from a member of a different species, transformation results in horizontal gene transfer.

Term
Benign Tumor
Definition
A mass of abnormal cells with specific genetic and cellular changes such that the cells rae not capable of surviving at a new site and generally remain at the site of the tumor's origin.
Term
Malignant Tumor
Definition
A cancerous tumor containing cells that have significant genetic and cellular changes and are capable of invading and surviving in new site. Malignant tumors can impair the functionns of one or more organs.
Term
Metastasis
Definition
The spread of cancer cells to locations distant from their original site.
Term
Heredity
Definition
The transmission of traits from one generation to the next.
Term
Variation
Definition
Differences between members of the same species.
Term
Genetics
Definition
The scientific study of heredity and hereditary variation.
Term
Gene
Definition
A discrete unit of hereditay information consisting of a specific nucleotide sequence in DNA.
Term
Gamete
Definition
A haploid reproductive cell, such as an egg or sperm. Gametes unite during sexual reproduction to produce a diploid zygote.
Term
Somatic Cells
Definition
Any cell in a multicellular organism except a sperm or egg or their precursors.
Term
Locus
Definition
A specific place along the length of a chromosome where a given gene is located.
Term
Asexual Reproduction
Definition
The generation of offspring from a single parent that occurs without the fusion of gametes. In most cases, the offspring are genetically identical to the parent.
Term
Clone
Definition

A lineage of genetically identical individuals or cells

 

In popular usage, an individual that is genetically identical to another individual

 

As a verb, to make one or more genetic replicas of an individual or cell

Term
Sexual Reproduction
Definition
A type of reproduction in which two parents give rise to offspring that have unique combinations of genes inherited from both parents via the gametes.
Term
Life Cycle
Definition
The generation-to-generation sequence of stages in the reproductive history of an organism.
Term
Karytype
Definition
A display of the chromosome pairs of a cell arranged by size and shape.
Term
Homologous Chromosomes
Definition
A pair of chromosomes of the same lenth, centromere position, and staining pattern that possess genes for the same characters at corresponding loci. One homologous chromosome is inherited from the organism's father, the other from the mother. 
Term
Sex Chromosomes
Definition
A chromosome responsible for determining the sex of an individual.
Term
Autosome
Definition
A chromosome that is not directly involved in determining sex; not a sex chromosome.
Term
Diploid Cell
Definition
A cell containing two sets of chromosomes (2n), one set inherited from each parent.
Term
Haploid Cell
Definition
A cell containing only one set of chromosomes.
Term
Fertilization
Definition

The union of haploid gametes to produce a diploid zygote

 

The addition of mineral nutrients to the soil.

Term
Zygote
Definition
The diploid cell produced by the union of haploid gametes during fertilization; a fertilized egg.
Term
Meiosis
Definition
A modified type of cell division in sexually reproducing organisms consistin of two rounds of cell division but only one round of DNA replication. It results in cells with half the number of chromosome sets as the original cell.
Term
Alternation of Generations
Definition
A life cycle in which there is both a multicellular diploid form, the sporophyte, and a multicellular haploid form, the gametophyte; characteristic of plants and some algae.
Term
Meiosis I
Definition
The first division of a two-stage process of cell division in sexually reproducing organisms that results in cells with half the number of chromosome sets as the original cell.
Term
Meiosis II
Definition
The second diision of a two-stage process of cell division in sexually reproducing prganisms that results in cells with half the number of chromosome sets as the original cells.
Term
Recombinant Chromosome
Definition
A chromosome created when crossing over combined DNA from two parents into a single chromosome.
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