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ch.6
ch.6
166
Biology
Undergraduate 1
04/05/2008

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Term
all organsims are made up of
Definition
cells
Term
the _ is the simplest collection of matter that can live
Definition
cell
Term
cell struncture is corrlated to
Definition
cellular function
Term
all cells are related by their?
Definition
descent from earlier cells
Term
scientists use _ to visulaize cells too small to see with the naked eye
Definition
microscopes
Term
in _ visible light passes through a specimen and then through glass lenses, which magnify the image
Definition
a light microscope (LM)
Term
the minium resolution of an light microscope (LM) is about _, the size of a small bacterium
Definition
200nm (nanometers)
Term
miscroscopes vary in?
Definition
magnification and resolving power
Term
_ is the ratio of an object's image to its real size
Definition
magnification
Term
is a measure of image clarity (minimum distance two points can be separated by and still be viewed as two separate points).
Definition
resolving power
Term
what are the types of microscopy?
Definition

brightfield (unstained specimen)

brightfield (stained specimen)

fluorescence

differential-interference-contrast (nomarski)

confocal

Term
_ passes light directly through specimen; unless cell is naturally pigmented or artifically stained, image has little contrast
Definition
brightfield (unstained specimen)
Term
staining with various dyes enhances contrast, but most staining procedures require that cells be fixed (preserved)
Definition
brightfield (stained specimen)
Term
shows locations of specific molecules in the cell. these substances absorb shortened wavelength, ultra-violet radiation and emit longer-wavelength, visble light. the fluorescing molecules may occur naturally in the specimen but more often are made by tagging the molecules of interest with fluoresent molecules
Definition
fluorescence
Term
_ enhances contrast in unstained cells by amplyfing variations in density wihin specimen; especially useful for examining living, unpigmented cells
Definition
phase-contrast
Term
_ differential-interference-contrast (normarski)
Definition

like phase contrast microscopy, it uses optical modifications to exaggerate differences in density

Term
_ uses lasers and special optics for "optical sectioning." Only those regions within a narrow depth of focus are imaged. regions above and below the selected plane of view appear black rather rhan blurry. This microscope is typically used with fluorescently stained specimens.
Definition
conofocal
Term
while light microscope can resolve individual cells, it cannot resolve?
Definition
much of the internal anatomy, especially the organelles
Term
to resolve smaller structures we use?
Definition
electron microscope (EM)
Term
_ focuses a beam of electrons through the specimen or onto its surface
Definition
electron microscope (EM)
Term
to resolve smaller structures we use electron microscope (EM), which focuses a beam of electroms through the specimen or onto its surface because?
Definition

1. because resolution is inversely related to wavelength used, electron microscopes with shorter wavelengths than visble light have finer resolution.

2. theoretically, the resolution of a modern EM could reach 0.1 nm (nanometer) but the practical limit is closer to about 2nm.

Term

_ are used mainly to study the internal ulrastructure of cells

Definition
transmission electron microscopes (TEMs)
Term
_ aims an electron thru a thin sectopm of the specimen (windpipe of a rabbit).
Definition
electron transmission microscope (TEM)
Term
in transmission electron microscopes the image is focused and magnifed by?
Definition
electromagnets
Term
for transmission electron microscopes, to enhance contrast, the thin sections are?
Definition
the thin sections are stained with atoms of heavy metals
Term

Scanning electron microscopes (SEMs) are useful for studying?

Definition
surface structures
Term
In __ microscope, the sample surface is covered with a thin film of gold
Definition
scanning electron microscope
Term
In a _ microscope, the beam excites electrons on the surface
Definition
scanning electron microscopes (SEM)
Term
in _ microscope, the secondary electrons are collected and focused on a sceen
Definition
scanning electron microscope (SEM)
Term
the _ has great depth of field, resulting in an image that seems three-dimmensional
Definition
screening electron microscope
Term

___ microscope reveal organelles, but they can only be used on dead cells and they may introduce some artifacts

Definition
electron microscopes
Term
_ microscopes do not have as high a resolution, but they can be used to study live cells
Definition
light microscopes
Term
microscopes are a major tool in ___, the study of cell structures
Definition
cytology
Term
cytology coupled with biochemistry, the study of molecules and chemical processes in metabolism, developed into ?
Definition
modern cell biology
Term
the goal of _ is to separate the major organelles of the cells so that their individual functions can be studied
Definition
cell fractionation
Term
the basic structural and functional unit of every organism is one of two types of cells?
Definition
prokaryotic and eukaryotic
Term
The organisms of the domains _ and _ consist of prokaryotic cells?
Definition
Bacteria and Archaea
Term
which domains consist of eukaryotic cells?
Definition
protists, fungi, animals and plants
Term
what are the basic features of all cells?
Definition

1.plasma membrane

2.semifluid substance called the cytosol

3.chromosomes (carry genes)

4. Ribosomes (make proteins)

 

Term

Differences in prokaryotic and eukaryotic cells?

Definition

1. prokaryotic cells have no nucleus

2. in a prokaryotic cell, DNA is in an unbound region called the nucleoid

3. Prokaryotic cells lack membrane-bound organelles

4. eukaryotic cells have DNA in a nucleus that is bound by a membranous nuclear envelope

5. eukaryotic cells have membrane bound organelles

6.eukaryotic cells are generally much larger than prokaryotic cells

7. the logistics of carrying out cellular metabolism sets limits on the size of cells

Term

how do prokary

Definition
Term
the _ functions as a selective barrier that allows passage of oxygen, nutrients and wastes for the whole volume of the cell
Definition
plasma membrane
Term
the plasma membrane functions as a selective barrier that allows passage of ?
Definition
oxygen, nutrients and wastes for the whole volume of the cell
Term

a _ cell has internal membranes that partition the cell into organelles

Definition
eukaryotic cell
Term
in _ cell, plant and animal cells have most of the same organelles
Definition
eukaryotic cells
Term
in eukaryotic cells, the general structure of a __ is a double layer of phospholipids with other lipids and diverse proteins
Definition
biological membrane
Term
in eukaryotic cells, each type of membrane has ?
Definition
a unique combination of lipids and proteins for its specific functions
Term

In a eukaryotic cell, the _ contains most of the DNA

Definition
nucleus
Term
in eukaryotic cells, _ use the information from the DNA to make proteins
Definition
ribosomes
Term

in eukaryotic cells, the _ contains most of the cell's genes and is usually the most conspicuous organelle

Definition

nucleus

Term
in eukaryotic cells, the _ encloses the nucleus, separating it from the cytoplasm
Definition
nuclear envelope
Term

in eukaryotic cells, _ contain rRNA and protein

Definition
ribosomes
Term
in eukaryotic cells, ribosomes contain?
Definition
rRNA and protein
Term
in eukaryotic cells, a _ is composed of two subunits that combine to carry out protein synthesis
Definition
ribosome
Term
the _, regulates protein traffic and performs metabolic functions in the cell
Definition
endomembrane system
Term
what are components of the endomembrane system ?
Definition

1. nuclear envelope

2.endoplasmic reticulum

3. golgi apparatus

4. lysosomes

5. vacuoles

6. plasma membrane

Term
the compoments of the endomembrane system are either _ or _ via transfer by vesicles
Definition
these components are either continuous or connected via transfer by vesicles
Term
the _ accounts for more than half of the total membrane in many eukaryotic cells
Definition
endoplasmic reticulum (ER)
Term
the _ is continous with the nuclear envelop
Definition
endoplasmic reticulum (ER)
Term
there are two distinct regions of the endoplasmic reticulum (ER)
Definition

smooth ER

rough ER

Term
_ endoplasmic reticum (ER) lacks ribosomes
Definition
smooth endoplasmic reticulum (ER)
Term
_ endoplasmic reticulum (ER) have ribosomes studding its surface
Definition
rough
Term

what are the functions of smooth ER?

Definition

1.synthesizes lipids

2. metabolizes carbohydrates

3. stores calcium

4. detoxifies poison

Term

what are the functions of rough ER?

Definition

1. has bound ribosomes

2. produces proteins and membranes, which are distributed by transport vesicles

3. is a membrane factory for the cell

Term
in eukaryotic cells, the _ consists of flattened membranous sacs called cisternae
Definition
golgi apparatus
Term
the golgi apparatus consists of flattened membranous sacs called?
Definition
cisternae
Term
what are the functions of the golgi apparatus?
Definition

modifies products of the ER

2. manufactures certain macromolecules

3.sorts and packages materials into transport vesicles

Term
the _ is a membrane bounded sac of hydrolytic enzymes that digests macromolecules
Definition
lysosome
Term

Whar can lysosomal enzymes do?

Definition

1.can hydrolyze proteins, fats, polysccharides and nucleic acids 

2.use enzymes to recycle organelles and maromolecules

Term
_, a process in which lysosomes use enzymes to recycle organelles and marcomolecules
Definition
autophagy
Term
vesicles and vacuoles (larger version)  are membrane bound sacs with what kind of varied functions?
Definition

1. food vacuoles from phagocytosis fuse with lysosomes

2. contractile vacuoles found in freshwater protists pump excess water out of the cell

3. central vacuoles found in many mature plant cells, hold organic compounds and water

Term
the membrane surrounding the central vacuole, the _ is selective in its transport of solutes into the central vacuole
Definition
tonoplast
Term
the _ plays a key role in the synthesis and hydrolysis of marcomolecules in the cell
Definition
endomembrane system
Term
what modify marcromolecules for their various functions?
Definition
the various components
Term
the _ is a complex and dynamic player in the cell's compartmental organization
Definition
endomembrane system
Term
_ are the sites of cellular respiration
Definition
mitochondria
Term
_ are found only in plants and algae, are the sites of photosynthesis
Definition
chloroplasts
Term
_ and _ are not part of the endomembrane system
Definition
mitochondria and cholorplasts
Term
what are oxidative organelles?
Definition
peroxisomes
Term
mitochondia are in nearly all _ cells
Definition
eukaryotic cells
Term
_ have a smooth outer membrane and an inner membrane folded into cristae
Definition
mitochrondria
Term
in the mitochondria, the inner membrane creates which two compartments?
Definition

intermembrane space and mitchondrial matrix

Term

some metabolic steps of cellular respiration are catalyzed in the?

Definition
mitochondrial matrix
Term
_ present a large surface area for enzymes that synthesize ATP
Definition
cristae
Term
the _ is a member of a family of organelles called plastids
Definition
chloroplast
Term
the chloroplast is a member of a family of organelles called
Definition
plastids
Term
_ contain the green pigment chlolophyll, as well as enzymes and other molecules that function in photosynthesis
Definition
chloroplasts
Term
_ are found in leaves and other green organs of plants and in algae
Definition
chloroplasts
Term
the chloroplasts structure includes?
Definition

thykaloids and stroma

Term
in chloroplast structure, the membranous sacs are called _
Definition
thylakoids
Term
in the chloroplast structure, the internal fluid is called _
Definition
stroma
Term
_ are specialized metabolic compartments bounded by a single membrane
Definition
peroxisomes
Term
peroxisomes produce _ and convert it to _
Definition
peroxisomes produce hydrogen peroxide and convert it to water
Term
the _ is a network of fibers extending throughout the cytoplasm
Definition
cytoskeleton
Term
the _ organizes the cell's structures and activities, anchoring many organelles
Definition
cytoskeleton
Term
the cytoskeleton is composed of 3 types of molecular structures?
Definition

1. mircotubules

2.marofilaments

3. intermediate filaments

Term
the _ helps to support the cell and maintain its shape
Definition
cytoskeleton
Term
the _ interacts with motor proteins to produce motility
Definition

cytoskeleton

Term

inside the cellm vesicles can travel along "monorails" provided by the _

Definition
cytoskeleton
Term
recent evidence suggests that the _ may help regulate biochemical activities
Definition
cytoskeleton
Term
_ are the thickest of the three components of the cytoskeleton
Definition
microtubules
Term
_ also called actin filaments are the thinnest components
Definition
microfilaments
Term
_ are fibers with diameters in a middle range
Definition
intermediate filaments
Term
what are the main functions of microtuble
Definition

1.shaping the cell

2. guiding movement of organelles

3. separating chromosome during cell division

 

Term
what are the protein subunits of microtuble?
Definition
tubulin, consisting of x(stands for alpha)-tubulin and β-tubulin
Term
what is the structure of microtubule?
Definition

1.hollow tubes

2. wall consists of 12 columns of tubulin molecules

Term
what is the structure of microfilaments?
Definition
two interwined strands of actin, each polymer of actin subunits
Term
what are the protein subunits for microfilaments
Definition
actin
Term
what are the main functions of macrofilaments?
Definition

1.maintainance of cell shape (tension bearing elements)

2.changes in cell shape

3.muscle contraction

4.cytoplasmic streaming

5.cell motility (as in pseudopodia)

6.cell division (cleavage furrow formation)

Term
what is the structure of intermediate filaments?
Definition
fibrous proteins supercoiled into thicker cables
Term
what are the protein subunits of intermediate filaments?
Definition

one of several difference proteins of the keratin family, depending on cell type

Term
what are the main functions of the intermediate filaments?
Definition

1.maintenance of cell shape (tension bearing elements)

2. anchorage of nucleus and certain other organelles

3. formation of nuclear lamina

Term
_ are hollow rods about 25 nm in diameter and about 200nm t0 25 microns long
Definition
microtubules
Term
in many cells, microtubules grow out from a _ near the nucleus
Definition

centrosome

Term
the _ is a "microtubule-organizing center"
Definition
centrosome
Term
in animal cells, the _ has a pair of centrioles, each with nine triplets of microtubules arranged in a ring
Definition
in animal cells, the centrosome
Term
_ control the beating of cilia and flagella, which are locomotor appendages of some cells
Definition
microtubules
Term
cilia and flagella fiffer in their _ pattens
Definition
beating patterns
Term
a _ has an undulatory movment
Definition
flagellum
Term
a flagellum has an undulatory movement: force is generated _ to the flagellum's axis
Definition

parallel

Term
_ move more like oars with alternating power and recovery strokes
Definition
Term
cilia move mroe like oars with alternating power and recovery strokes; they generate force _ to the cilia's axis
Definition
perpendicular
Term
cilia and flagella share a common ultrastructure:
Definition

1. a core of microtubules sheathed by the plasma membrane

2. a basal body that anchors the cilium or flagellum

3. a motor protein called dynein, which drives the bending movements of a cilium or flagellum

Term
how dynein "walking" moves flagella and cilia?
Definition

1.dynein arms alernately grab, movem and release the outer micrtubles

2. protein cross-links limit sliding

3.forces exerted by dynein arms cause doublets to curve, bending the cilium or flagellum

Term
_ are solid rods about 7nm in diameter, built as a twisted double chain of actin subunits
Definition
microfilaments
Term
the structural role of _ is to bear tension, resisting pulling forces within the cell
Definition
microfilaments
Term
_ form a 3D network just inside the plasma membrane to help support the cell's shape
Definition
microfilaments
Term
bundles of _ make up the core of microvilli of intestinal cells
Definition
microfilaments
Term
microfilaments that function in cellular motility contain?
Definition
the protein myosin in addition to actin
Term
in muscles cells, thousands of _ filaments are arranged parallel to one another
Definition
actin filaments
Term
thicker filaments composed of _ interdigitate with the thinner actin fibers
Definition
myosin
Term
localized contraction brought about by _ and _ also drives amoeboid movement
Definition
actin and myosin
Term
_ extend and contract through the reversible assembly and contraction of actin subunits into microfilaments
Definition
pseudopodia (cellular extensions)
Term
in plants and others, actin-myosin interactions and sol-fel transformations drive __
Definition
cytoplasmic streaming
Term
in plants and others, what drive cyoplasmic streaming
Definition
actin-myosin interactions and sol-gel transformations
Term
What are the effects of actin-myosin interactions and sol-gel transformations which drive cytoplasmic steaming?
Definition

1. this creates a circular flow of cytoplasm in the cell

2. this speeds the distribution of materials within the cell

Term
_ range in diameter from 8-12 nm, larger than microfilaments but smaller than microtubules
Definition
intermediate filaments
Term
_ support cell shape and fix organelles in place
Definition
intermediate filaments
Term
_ are more permanent cytoskeleton fixtures than the other two classes
Definition
intermediate filaments
Term
most cells _ and_ materials that are external to the plasma membrane
Definition
synthesize and secrete materials that are external to the plasma membrane
Term
most cells synthesize and secrete materials that are external to the plasma membrane. these extracellular structures include?
Definition

1. cell walls of plants

2. the extracellular matrix (ECM) of animals

3. intercellular junctions

Term
_ is an extracellular structure that distinguishes plant cells from animal cells
Definition

cell wall

Term
the _ protects the plant cell, maintains its shape and prevents excessive uptake of water
Definition
cell wall
Term
_ are made of cellulose fibers embedded in other polysaccharides and protein
Definition
plant cell walls
Term
what are the multiple layers that plant cell walls may have ?
Definition

1. primary cell wall

2.middle lamella

2.secondary cell wall

 

Term
this type of layer in plant cells is relatively thin and flexible
Definition
primary cell wall
Term
this layer in plant cells is thin layer between primary walls of adjacent cells
Definition
middle lamella
Term
this layer of the plant cell walls (in some cells) added between the plasma membrane and the primary cell wall
Definition
secondary cell wall
Term
_ are channels between adjacent plant cells
Definition
plasmodesmata
Term
_ lack cell walls but are covered by an elaborate extracellular matrix (ECM)
Definition
animal cells
Term
the _ is made up of glycoproteins and other macromolecules
Definition

extracellular matrix (ECM)

Term
the _ is made up of glycoproteins and other macromolecules
Definition

elaborate extracellular matrix (ECM)

Term

the functions of elaborate extracellular matrix (ECM) are?

Definition

support

adhesion

movement

regulation

Term
neighboring cells in _, _ or _ often adhere, interact and communicate through direct physical contact
Definition
tissues, organs or organ systems
Term
neighboring cells in tissues, organs, or organ systems often?
Definition
adhere, interact and communicate through direct physical contact
Term

neighboring cells in tissues, organs, or organ systems adhere, interact and communicate through direct physical contact. What facilitates this contact?

Definition
intercellular junctions
Term
_ are channels that perforate plant cell walls
Definition
plasmodesmata
Term
through_, water and small solutes (and sometimes proteins and RNA) can pass from cell to cell
Definition
plasmodesmata
Term

Through plasmodesmata, _ and _(and sometimes _) can pass from cell to cell

Definition
water and small solutes (and sometimes proteins and RNA)
Term
at _, membranes of neighboring cells are pressed together, preventing leakage of extracellular fluid
Definition
tight junctions
Term
_ ( ) fasten cells together into strong sheets
Definition
desmosomes (anchoring junctions)
Term
_ ( ) provide cytoplasmic channels between adjacent cells
Definition
gap junctions (communicating juncitons)
Term
what do cells rely on in order to function?
Definition
cells rely on the integration of structures and organelles
Term

a macrophage's ability to destroy bacteria involves the whole cell, coordinating components such as the cytoskeleton, lysomes and plasma membrance. this is an example of?

Definition

how cells rely on the integration of structures and organelles in order to function

(cyctoskeleton, lysosomes and plasma membrane work together so that marophage can destroy bacteria)

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