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Ch 3, 4_Chemistry of Life: Carbon Chemistry II
"Life: The Science of Biology" 9th ed sadava
38
Biology
Undergraduate 1
10/17/2010

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Term
Phospholipids (structure)
Definition

one of 3 fatty acids in triglyceride is replaced with a phosphate group.

...a phosphate head (hydrophilic) with two fatty tails (hydrophobic).

Term
Phospholipids in water
Definition

Phosphate groups tend to ionize, so the head is hydrophilic.

- Fat tails hate water.

- Arrange themselves in phospholipid bilayer, foundation of cell membrane

Term
Phospholipid bilayer
Definition

foundation of the cell membrane

 

Term
Fats and Diet
Definition

Fats are essential to properly functioning organism, but not in excess.

 

- no lipids = no phospholipids = no/weak cell membranes

Term
Types of lipids?
Definition

Phospholipids

Triglycerides

Others with different structures are steroids: Cholesterol, Vitamin D2, Cortisol, Testosterone

Term
Polypeptides: composition
Definition

Strong of several (hundreds) amino acids;

polymers of amino acids

aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa-aa...


- each "aa" can be one of 20 common aa's

- Makes up a protein

- folds into primary, secondary and tertiary structure

Term
Protein structure
Definition

- highly complex molecules of one or more polypeptides connected together.

- can be be with an unlimited combo of the 20 aa's.

Term
Primary structure
Definition
Order of amino acids in a polypeptide of a protein
Term
Secondary structure
Definition

folding of a polypeptide.

- regular pattern due to H-bonding between amine group of one aa and carboxyl group of another.

 

alpha-helix & ß beta-pleat

 

Term
Tertiary structures
Definition

additional folding of polypeptide, depending on order of aa.

Due to:

- H-bonding between polar aa's and van der waals forces between non-polar aa's.

- disulfide bonding between thiol groups of cysteine aa's

- hydrophilic polar and ionic aa's are outside of folded polypeptide and touch water, while hydrophobic non-polar aa's are inside, away from H2O

Term
Quarternary Structure
Definition
final structure: Joining of several polypeptides to form protein.
Term
Functions of Protein
Definition

Functions depend on its 3D shape...

1. structural

2. signaling (ex: receptors, hormones, neurotransmitters)

3. Enzymes (catalysts)

4. Immune system antibodies

Term
Signaling proteins
Definition

they are receptors for (detect) signaling molecules (chemical messengers for the body)

 

- detect signaling molecules by binding to them

Term
chemical reactions
Definition
changes in chemical molecules
Term
Catalyst
Definition

substance that promotes reaction (formation/destruction of chemical molecules), but isn't changed by it

 

- in cells, they are proteins aka enzymes

Term
Enzyme
Definition

Protein as a catalyst in a cell.

- determine what reactions will occur in a cell

Term
substrate
Definition
molecules that are reacting together through a catalyst (enzyme)
Term
antigens
Definition
harmful bacteria in our bodies destroyed by immune system (viruses, cancer cells, bacteria)
Term
antibodies
Definition
immune system proteins that help destroy antigens
Term
Carbohydrates
Definition

aldehydes or ketones containing repetitions of

H-C-OH -- carbon and a hydrate (H2O ratio))

- simplest: monosaccharides (simple sugars)

- carbons + pentoses + hexoses

- straight line or ring (hydroxyl group reacts with aldehyde group)

Term
Glucose
Definition
Common hexose formed when hydroxyl group of a monosaccharide reacts with the aldehyde group to form ring of C6H12O6
Term
Hexose
Definition

6-carbon sugars

- structural isomers.

ex: glucose, mannose, glactose, fructose

Term
Pentose
Definition

5-carbon sugars

- NOT isomers

ex: deoxyribose has one fewer oxygen than ribose

Term
disaccharide
Definition

two simple sugars connected

ex: glucose + fructose = double sugar sucrose

lactose, maltose

Term
oligosaccharide
Definition

chain of several monosaccharides (up to 20)

- common components of cell membranes

- important for cell recognition

Term
polysaccharide
Definition

many simple sugars joined in a chain

ex: starch, cellulose, glycogen

Term
starch
Definition
polysaccharide important for energy storage in plants
Term
glycogen
Definition
polysaccharide for energy storage in animals
Term
cellulose
Definition
polysaccharide molecule in plants forming the cell wall and giving plants strength to grow.
Term
Sugar variants
Definition

monosaccharides with functional groups (amine, sulfate)

ex: cartilage is composed of polysaccharide chondroitin sulfate, containing amine and sulfate

- important for cell signaling

Term
Nucleic acid
Definition
polymer of nucleotides
Term
nucleotide
Definition

composed of:

- 5-carbon sugar

- phosphate (P and O)

- nitrogen base (8 types: 4 combine with ribose: A, C, G, U; 4 combine with  deoxyribose: A, C, G, T)

- 4 types of nucleotides based on ribose, 4 types based on deoxyribose

Term
ribonucleic acid (RNA)
Definition
nucleotides linked by ribose
Term
DNA structure
Definition

nucleic acides linked with deoxyribose

- double-stranded: two strands of nucleotides linked by nitrogen bases and form double helix

AT

GC

 

Term
DNA purpose
Definition

responsible for genetic inheritance

- biochemical information that determines resemblance to parents

Term
DNA and proteins
Definition

DNA specifies order of aa's in the proteins a cell can make.

- nucleotide sequence codes the amino acid sequence of polypeptide

- 3 nucleotides code 1 amino acid (triplet code)

- primary strand codes polypeptide

- one gene=one polypeptide

Term
organism structure and formation
Definition

based on DNA and proteins:

- enzyme determines chemical reactions (cell function)

- chemical reactions determine what cell makes

- what cell makes (proteins, lipids, carbs) determine its structure

- both structure and function are determined by proteins, which are determined by DNA!

Term
triplet code
Definition

3 nucleotides code one amino acid

Ex: ACG: cysteine

TTC: lysine

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