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Cellular and Molecular Biology (Essential Cellular Biology e
Exam 4 Material: Ch. 16-19
136
Biology
Undergraduate 2
04/18/2010

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Term
Signal Transduction
Definition
converts signals on a cells surface into cellular responses; communicate via chemical messengers; suggests early origin
Term
Cell Signaling
Definition
refers to signal reception and transduction
Term
Hormones
Definition
signal molecules that are broadcasted throughout the entire body via the bloodstream
Term
Local Mediators
Definition
signal molecules diffuse locally through extracellular fluid; stays near the cell that secreted them
Term
Neurotransmitter
Definition
extracellular signal molecules released by nerve terminals when stimulated
Term
Receptor Protein
Definition
(receptor) activated by only one type of signal; restricts the types of signals that can affect the cell
Term
Extracellular Signal Molecules
Definition
two classes: 1) molecules too large or too hydrophilic to cross the plasma membrane 2) small or hydrophobic molecules that can easily cross the plasma membrane
Term
Steroid Hormones
Definition
intracellular receptor proteins including cortisol, estradiol, testosterone and thyroxine.
Term
Nitric Oxide
Definition
(NO) dissolved gaseous neurotransmitter that is very fast acting
Term
Intracellular Signaling Molecule
Definition
each cell activates or generates the next signaling molecule in the pathway until a metabolic enzyme is kicked into action causing a morphological change in the cytoskeleton causing the gene to turn on or off
Term
Intracellular Signaling Pathways
Definition
1) relays signals to spread it throughout the cell 2) amplifies the signal received to evoke a large intracellular response 3) integrates cells from multiple cells before relaying the signal 4) distributes the signal to more than one signaling pathway or effector protein
Term
Molecular Switches
Definition
receipt of a signal causes them to toggle from an inactive to an active state
Term
Protein Kinase
Definition
tacks a phosphate group onto the switch protein
Term
Protein Phosphatase
Definition
plucks the phosphate group off of the switch protein
Term
Serine/Threonine Kinases
Definition
operates in intracellular signaling pathways; phosphorylates proteins on serines or threonines
Term
Tyrosine Kinases
Definition
intracellular signaling pathway; phosphorylates proteins on tyrosines
Term
GTP-Binding Proteins
Definition
intracellular signaling pathway; switch between an active and an inactive state depending on whether they have GTP or GDP bound to them, respectively. They shut themselves off by hydrolyzing their bound GTP to GDP.
Term
Ion-Channel-Coupled Receptors
Definition
AKA: transmitter-gated ion channels; responsible for the rapid transmission of signals across synapses in the nervous system
Term
G-Protein-Coupled Receptors
Definition
GPCRs; forms the largest family of cell-surface receptors; mediate responses to an enormous diversity of extracellular signal molecules, including hormones, local mediators, and neurotransmitters
Term
G Protein
Definition
composed of 3 protein subunits; α,β, and γ, 2 of which are tethered to the plasma membrane by short lipid tails; second messenger
Term
Small Messengers
Definition
AKA: second messengers; small intracellular signaling molecules generated in cascade events; prouced in large numbers when a membrane-bound enzyme is activated, rapidly diffuse away from their source spreading the signal
Term
Adenylyl Cyclase
Definition
enzyme that alters the concentration of cyclic AMP within the cell
Term
Cyclic AMP
Definition
synthesized from ATP; G-protein
Term
Cyclic-AMP-Dependent Protein Kinase
Definition
(PKA) enzyme is normally inactive in a complex with another protein; catalyzes the phosphorylation of particular serines or threonines on certain intracellular proteins, altering the activity of the proteins
Term
Phospholipase C
Definition
propagates a signal by cleaving a lipid molecule that is a component of the plasma membrane
Term
Inositol Phospholipid
Definition
the molecule that phospholipase C cleaves; a phopholipid with the sugar inositol attached to its head; present in small quantities in the cytosolic half of the membrane lipid bilayer
Term
Inositol 1,4,5-Triphosphate
Definition
(IP3) one of two second messenger molecules generated with the action of phospholipase C
Term
Diacylglycerol
Definition
(DAG) one of two second messengers generated with the action of phospholipase C
Term
Protein Kinase C
Definition
(PKC) enzyme that translocated from the cytosol to the plamsa membrane; requires Ca++ to become active
Term
Calmodulin
Definition
most widespread and common Ca++ responsive protein; present in the cytosol of all eucaryotic cells
Term
Ca++/ Calmodulin-Dependent Protein Kinases
Definition
(CaM- Kinases) an important class of targets for calmodulin; influence other processes in the cell by phosphorylating selected proteins
Term
Adaption
Definition
frequently occurs in signaling pathways that respond to chemical signals; allows cells to remain sensitive to changes of signal intensity over a wide range of background levels of stimulation
Term
Enzyme- Coupled Receptors
Definition
transmembrane proteins that display their ligand-binding domains on the outer surface of the plasma membrane
Term
Receptor Tyrosine Kinases
Definition
(RTKs) enzyme-coupled receptor with a cytoplasmic domain; phosphorylates specific tyrosines on selected intracellular proteins
Term
Ras
Definition
a small GTP binding protein that is bound by a lipid tail to the cytoplasmic face of the plasma membrane;activated by virtually all RTKs
Term
Monomeric GTPases
Definition
family of small GTP-binding proteins
Term
MAP-Kinase Signaling Module
Definition
a 3-kinase protein
Term
MAP Kinase
Definition
the final kinase in the chain; mitogen-activated protein Kinase
Term
Phosphoinositide 3-Kinase
Definition
(PI 3-kinanse) promotes cell growth and survival; phosphorylates inositol phospholipids in the plasma membrane
Term
Cytokines
Definition
hormones and local mediators; bind to receptors that can activate transcription regulators that are held in a latent state near the plasma membrane
Term
Cytoskeleton
Definition
an intricate network of protein filaments that extends throughout the cytoplasm
Term
Intermediate Filaments
Definition
have great tensile strength; main function is to enable cells to withstand the mechanical stress that occurs when cells are stretched (e.g. skin)
Term
Nuclear Lamina
Definition
constructed from a class of intermediate filament proteins call lamins
Term
Microtubules
Definition
crucial in organizing role of all eucaryotic cells; long, stiff, hollow tubes of protein that can rapidly disassemble in one location and reassemble in another
Term
Polarity
Definition
the directional arrow embodied in the structure
Term
Centrosome
Definition
organizes the array of microtubules that radiates outward from it through the cytoplasm (important in cell division)
Term
Centrioles
Definition
made of cylindrical array of short microtubules; no role in the nucleation of microtubules in the centromere; function unknown
Term
Dynamic Instability
Definition
stems from the capacity of tubulin molecules to hydrolyze GTP; causes microtubules to grow and shrink rapidly
Term
Motor Proteins
Definition
use the energy derived from repeated cycles of ATP hydrolysis to travel steadily along the actin filament or the microtubule in a single direction
Term
Kinesins
Definition
generally move toward the plus end of a microtubule (away from the centrosome)
Term
Dyneins
Definition
move toward the minus end (toward the centrosome)
Term
Cilia
Definition
hairlike structures about 0.25 um in diameter, covered by plasma membrane, extends from the surface of many kinds of eukaryotic cells
Term
Flagella
Definition
propel sperm and many protozoa; similar to cilia in internal structure, but are usually much longer; designed to move the entire cell, not create a current
Term
Actin Filaments
Definition
found in all eucaryotic cells are are essential for many of their movements, especially those involving the cell surface
Term
Cell Cortex
Definition
area of high concentration of actin just beneath the plasma membrane; actin filaments are linked by actin-binding proteins into a meshwork that supports the outer surface of the cell and gives it mechanical strength
Term
Lamellipodia
Definition
contains a dense meshwork of actin filaments oriented so that most of the filaments have their plus ends close to the plasma membrane
Term
Filopodia
Definition
thin, still protrusions similar to lamellipodia
Term
Myosin
Definition
actin-dependent motor proteins belong to this family; binds to and hydrolyzes ATP, providing energy for their movement along actin filaments from the minus end toward the plus end
Term
Rho Protein Family
Definition
GTP-binding proteins; molecular switches that control cellular processes by cycling between an active GTP-bound state and an inactive GDP-bound state
Term
Sarcomeres
Definition
myofibrils are made up of these tiny contractile units; composed of actin and myosin
Term
Cell Cycle
Definition
the essential mechanism by which all living things reproduce
Term
M Phase
Definition
phase of the cell cycle including mitosis and cytokinesis
Term
Interphase
Definition
the period between one M phase and the next
Term
S Phase
Definition
(synthesis) cell replicates its nuclear DNA, essential prerequisite for cell division
Term
G1 Phase
Definition
(Gap) interval between the completion of M phase and the beginning of S phase
Term
G2 Phase
Definition
interval between the end of S phase and the beginning of M phase
Term
Checkpoints
Definition
molecular brakes that can stop the mitotic cycle; does not trigger the next step unless the cell is properly prepared
Term
Cell-Cycle Control System
Definition
switches machinery on and off at the correct times and thereby coordinates the various steps of the cell cycle
Term
Cyclins
Definition
responsible, in part, for switching kinases on and off at the appropriate times
Term
Cyclin-Dependent Protein Kinases
Definition
(Cdks) the kinases of the cell-cycle control system; concentrations vary in a cyclical fashion during the cell cycle
Term
M Cyclin
Definition
acts in G2 to trigger entry into M phase
Term
M-Cdk
Definition
active complex M cyclin forms with it's Cdk
Term
S-Cyclins and G1/S Cyclins
Definition
binds to distinct Cdk proteins late in G1 to form S-Cdk and G1/S-Cdk; triggers S phase
Term
G1 Cyclins
Definition
act early in G1 and bind to other Cdk proteins to form G1-Cdks
Term
G1-Cdks
Definition
helps drive the cell through G1 toward S phase
Term
Cdk Inhibitor Proteins
Definition
blocks the assembly or activity of one or more cyclin-Cdk complexes
Term
Origin recognition Complex
Definition
(ORC) a multiprotein complex that remains bound to origins of replication throughout the cell cycle; serves as a landing pad for additional regulatory proteins that bind before the start of S phase
Term
Sister Chromatids
Definition
two copies of each replicated chromosome that remain bound together
Term
Cohesins
Definition
assemble along the length of each sister chromatid as the DNA is replicated in S phase
Term
P53
Definition
a transcription regulator that activates the transcription of a gene encoding a Cdk inhibitor protein called p21
Term
Condensins
Definition
protein complexes that allows chromosomes to condense
Term
Mitosis
Definition
period in which the chromosomes are visible (because they are condensed)
Term
Centrosome
Definition
principal microtubule-organizing center in animal cells
Term
Aster
Definition
a radial array of microtubules that forms as two centrosomes separate
Term
Prophase
Definition
mitotic spindle begins to form
Term
Mitotic Spindle
Definition
two sets of microtubules that maintains the bipolar shape of a replicating cell
Term
Spindle Poles
Definition
two centrosomes give rise to microtubues that interact; called interpolar microtubules
Term
Prometaphase
Definition
starts abruptly with the disassembly of the nuclear envelope, which breaks up into small membrane vesicles
Term
Kinetochores
Definition
assemble on the condensed chromosomes during late prophase
Term
Bi-Orientation
Definition
generated tension on the kinetochores, which are being pulled in opposite directions
Term
Metaphase
Definition
chromosomes align at the equator of the spindle, halfway between the two spindle poles
Term
Anaphase
Definition
begins abruptly with the release of the cohesin linkage that holds the sister chromatids together
Term
Anaphase-Promoting Complex
Definition
(APC) securin is targeted for destruction by this protein complex at the beginning of anaphase; allows for separase to break the cohesin linkages
Term
Telophase
Definition
final stage of mitosis; mitotic spindle disassembles, nuclear envelop reassembles around each group of chromosomes to form daughter nuclei.
Term
Cytokinesis
Definition
the process by which the cytoplasm is cleaved in two, completes M phase
Term
Phragmoplast
Definition
the assembly process of a cell wall is guided by this structure, which is formed by the remains of the interpolar microtubules at the equator of the old mitotic spindle
Term
Apoptosis
Definition
programed cell death "falling off"
Term
Caspase
Definition
machinery responsible for apoptosis; part of the family of proteases
Term
Bc12 Family
Definition
main proteins that regulate the activation of procaspases; intracellular proteins
Term
Survival Factors
Definition
promote cell survival, largely by suppressing apoptosis
Term
Mitogins
Definition
stimulate cell division, primarily by overcoming the intracellular braking mechanisms that tend to block progression through the cell cycle
Term
Growth Factors
Definition
stimulate cell growth by promoting the synthesis and inhibiting the degradation of proteins and other macromolecules
Term
Asexual Reproduction
Definition
simple and direct, gives rise to offspring that are genetically identical to parent organisms
Term
Sexual Reproduction
Definition
involves the mixing of genomes from two individuals to produce offspring that are genetically distinct from one another and from both parents
Term
Sex Chromosomes
Definition
specialized chromosomes that distinguish males from females
Term
Alleles
Definition
variant versions of a gene
Term
Germ Cells
Definition
AKA: gametes; haploid cells
Term
Zygote
Definition
the fertilized egg
Term
Somatic Cells
Definition
all cells not for sex determination; body cells
Term
Haploid
Definition
carries only a single set of chromosomes
Term
Diploid
Definition
carries two sets of chromosomes
Term
Meiosis
Definition
describes the cellular division from diploid cells to haploid cells
Term
Sister Chromatids
Definition
remain tightly linked along their length
Term
Homologous Chromosomes
Definition
AKA: homologs; physical pairing of matched sets of chromosomes
Term
Pairing
Definition
initial association of homologs
Term
Bivalent
Definition
the structure formed when duplicated chromosomes pair (tetrad)
Term
Recombination
Definition
a process in which an exchange of DNA occurs between two identical or very similar nucleotide sequences
Term
Crossing Over
Definition
recombination resulting from a physical swap of homologous segments form the maternal and paternal chromosomes
Term
Chiasma
Definition
portion of the chromosome that holds duplicated homologs together
Term
Fertilization
Definition
gametes that come together to form a zygote
Term
Zygote
Definition
a fertilized egg
Term
Alleles
Definition
alternate versions of a gene
Term
Genotype
Definition
the whole collection of alleles possessed by an individual
Term
Homozygous
Definition
two identical alleles
Term
Heterozygous
Definition
dissimilar alleles
Term
Phenotype
Definition
the appearance; physical expression of a genotype
Term
Law of Segregation
Definition
states that the two alleles for each trait separate during gamete formation and that they then unite at random (one from each parent) at fertilization
Term
Pedigree
Definition
shows the phenotype of each family member for the relevant trait
Term
Law of Independent Assortment
Definition
the independent segregation of each pair of alleles during gamete formation
Term
Loss-of-Function Mutations
Definition
changes the reduce or eliminate the activity of a gene
Term
Gain-of-Function Mutations
Definition
usually dominant; produces proteins that are overactive or are active in inappropriate circumstances
Term
Genetic Screen
Definition
involves examining many thousands of mutagenized individuals to find those few who show a specific altered phenotype of interest
Term
Complementation Test
Definition
reveals whether the mutations fall in the same gene or in different genes
Term
Polymorphisms
Definition
two or more sequence variants coexits in the population and are both common
Term
Single-Nucleotide Polymorphisms
Definition
(SNPs) used as markers for building genetic maps or for conducting searches for mutations that correlate with specific diseases or predispositions to disease
Term
Haplotype Blocks
Definition
linked to their nearest neighbors in blocks; tend to be inherited as a unit
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