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Cell Bio Final exam
cell bio final
51
Biology
Undergraduate 3
05/03/2010

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Term
Cell Junctions
Definition

Specialized structures that join cells.

3 types in animal cells:Adhesive Junctions, Tight Junctions, and Gap Junctions

In Plant cells: Plasmodesmata

Term
Adhesive Junctions
Definition
Links the cytoskeleton of one cell to another, or the extracellular matrix. Common in tissues subject to stretching.
Term
Desmosomes
Definition

Type of Adhesive Junction that are points of strong adhesion between adjacent cells.

Beneath the plasma membrane of each adjoining cell is a plaque (fibrous material including plakoglobin and desmoplakin which associate with intermediate filaments extending into the cell interior).  The plaque is connected to the transmembrane proteins, desmocollin and desmoglein (both cadherins; glycoproteins that complex with Ca+2 to join cells;

 

Term
Hemidesmosome
Definition

Type of Adhesive junction that connects a cell to the extracellular matrix instead of another cell.

Beneath the plasma membrane is a plaque (fibrous material including the protein plectin) which associates with intermediate filaments (keratin) that extend into the cytoplasm. Integrins (transmembrane proteins) link the plaque to the extracellular matrix.

Term
Adherens Junctions
Definition

A type of Adhesive Junction that involves actin microfilaments instead of intermediate filaments.

Plaques contain numerous proteins which associate with microfilaments that extend into the cytoplasm and transmembrane cadherins which link cells together.  In epithelial cells, adherens junctions often form a continuous adhesion belt around the cells

 involved.

 

Term
Focal Adhesion
Definition
Adherens Junction that attaches to the cell extra cellular matrix rather than another cell.
Term

Tight Junctions

 

What do they make possible?

Definition

Found as continuous belts that serve as seals preventing water/solute movement between cells.

 

They make cell compartmentalization possible.

Term
How are tight junctions formed?
Definition
They are formed when transmembrane proteins (occludins and several types of claudins) on adjacent cells bind tightly to fuse cells together.
Term
What do tight junctions block and what does this allow?
Definition
Tight junctions prevent the lateral movement of integral membrane proteins within membranes. This allows for discrete functional domains at opposite ends of cells.
Term
Gap Junctions
Definition
Communicative junctions between adjacent animal cells.
Term
How are Gap Junctions Formed?
Definition

Six transmembrane protein (connexin) molecules associate to form a hollow cylindrical structure in the plasma membrane (connexon).  Connexons in the membranes of adjacent cells align to form a pipe connecting two cells.  The resultant hydrophilic channel conducts water, ions, and other small molecules

Term
How can direct connections between cells be demonstrated?
Definition

1) measuring the current flowing between cells in response to a voltage potential.

2) by monitoring the movement of dye from one cell to another.

Term
How can channel size be regulated?
Definition

At low calcium concentration and high pH the channels open.

At high calcium concentration and low pH the channels close.

Term

Plasmodesmata

 

What do they allow?

Definition

Cytoplasmic connections between plant cells that aid in communication.

 

They allow for the intercellular transport of water and solutes such as ions sugars, amino acids, and small proteins. Excluded are large proteins and RNA molecules.

Term

Extracellular matrix (ECM)

 

What is the ratio of cells to matrix?

Definition

Consists of various materials produced and secreted by cells. Is found in all 5 kingdoms where it plays an architectural, supportive and other funtional roles.

 

The ratio of cells to matrix is highly variable.

 

Term
What is the ECM produced by and what are the major groups of ECM molecules?
Definition

In animals the ECM is produced primarily by Fibroblasts, Ondontoblasts, osteoblasts, and chondroblasts.

Major groups of ECM molecules include

 glycosaminoglycans & proteoglycans, fibrous proteins, and adhesive

 glycoproteins.

 

Term
What is the ECM made of in plants?
Definition
the cell wall, primarily made of cellulose.
Term

What are GAG's composed of?

 what do they attract?

 

what are they linked to?

Definition

composed of repeating chains of disaccharides, one of which is always an amino sugar (dermatan sulfate and hyaluronan)

The negative charges of the carboxyl and sulfate groups attract cations (esp Na+) allowing water to move into the matrix.

They are often covalently linked to core proteins forming proteoglycans.

 

Term

What are proteoglycans linked to?

What are their functions?

Definition

can be linked to hyaluronan (hyaluronic acid) to form enormous complexes.

Function as molecular sponges

bedding for other extracellular components

sites of attachment

enzyme regulators

Term
What is the most abundant fibrous protein and what does it consist of?
Definition
Collagen is the most abundant, and it consists of a triple helix incorporating unusual amino acids (hydroxylysine and hydroxyproline) which helps to stabilize the structure.
Term
What does Ascorbic Acid deficiency do?
Definition
Ascorbic acid (vitamin C) definciency prevents proline hydroxylation and causes scurvy (arrrr drink your orange juice! arrrr)
Term

what does collagen assembly require?

 

What are elastins?

Definition

Collagen assembly requires proteolytic cleavage of procollagen before incorporation into fibrils

 

Elastins are covalently linked polypeptides that can adopt alternative configurations to stretch and recoil.

Term
What do adhesive glycoproteins include and what do they do?
Definition
fibronectins and laminins, which bind proteoglycans and collagen to eachother and help anchor cells to the ECM
Term
What do Fibronectins have?
Definition
cell and various extracellular molecule binding sites. Integrins associate with fibronectins.
Term
What do Laminins have?
Definition
Laminins possess several domains that constitute binding sites for cell surface receptors, collagen, and other laminin molecules.
Term
What is the ECM in plants?
Definition
Consists of the cell wall
Term
Interphase consists of what 3 phases?
Definition

G1 (1st gap) - growth

S - DNA synthesis

G2 (2nd gap)

 

Term
The mitotic phase consists of what phases?
Definition

Prophase

Metaphase

Anaphase

Telophase

Cytokinesis (division of the cytoplasm)

(mitosis = nuclear division)

Term
How is cytokinesis different in plant and animal cells?
Definition
Animal cells furrow inward whereas plant cells divide from the inside out with a formation of a cell plate.
Term
What does the length of time to complete the cell cycle depend on?
Definition
cell type and environment.
Term

What produces MPF and how does MPF activate?

 

Definition

mitotic cyclin combines with a cyclin dependent kinase (cdk) to produce the maturation promoting factor (mpf)

MPF activation requires the kinase and phosphotase activity of other regulatory proteins.

Term
What does Activated MPF do?
Definition

Activated MPF moves cells from G2 to M phase by initiating:

disassembly of nuclear lamina

chromosome condensation

spindle fiber formation

anaphase promoting complex (APC) which tags proteins (anaphase inhibitors and mitotic cyclin) for degredation.

Term
What other cyclins are involved in mitosis?
Definition
G1 cyclin + G1 Cdk     =
       G1
cyclin-Cdk complex

  -inactivates anaphase promoting complex
  -activates transcription of genes required for
     DNA synthesis
Activated G1
cyclin-Cdk complex moves cell from G1 into S phase (first committed step toward cell division)
Term
What promotes/controls cell division?
Definition
extracellular signaling proteins (growth factors)
Term
what do growth factors bind to?
Definition
most growth factors bind to receptor tyrosine kinases which transduce signals through Ras to initiate the mitogen activated protein MAP kinase cascade resulting in cyclin and Cdk gene transcription.
Term
what is apoptosis triggered by?
Definition

external signals recieved from the extracellular environment

internal signals related to the physiological state of the cell.

Term
How does Tumor Necrosis Factor work?
Definition
TNF (an external signal) binds to a transmembrane receptor (TNFR1) causing a conformational change which activates death domains. These recruit and convert procaspase - 8 molecules into the caspase 8 protease which activates executioner caspases.
Term
how do executioner caspases kill a mammalian cell?
Definition

destroying numerous caspases (including MAP KKK and Raf)

destroying nuclear lamins

activating DNase

inactivating DNA repair mechanisms

Term
How does apoptosis occur in response to internal signals?
Definition
internal damage activates members of the Bcl-2 gene family causing the release of cytochrome c from mitochondria.
Term
How does cancer work?
Definition

Defects in apoptosis/the cell cycle can lead to cancer.

cancer usually results from mutations in the following genes:

proto-oncogenes (converted into oncogenes)

tumor supressor genes

DNA repair genes

Term
What are oncogenes and how to they work?
Definition

Oncogenes are genes that cause cancer when present. Often they code for altered growth factors, receptor tyrosine kinases, G proteins, Kinases (like raf), transcription factors, cyclins, and Cdk's

Altered oncogene proteins lead to uncontrolled cell proliferation.

Term
What is p53 and what does it normally do?
Definition
p53 is a tumor supressing gene and it ordinarily preserves genome integrity by protecting DNA from damage from mutagenic compounds and ionizing and non-ionizing (UV) radiation.
Term

What does UV light do?

 

Definition
It causes pyrimidine dimer formation which prevents polymerase read through. Excision repair and photoreactivation (involving photolyase) usually restore original structures.
Term
What happens when DNA is damaged?
Definition

Cells increase levels of p53 gene product present (by decreasing degredation) which functions as a transcription factor to increase p21 gene transcription.  The p21gene product is a Cdk inhibitor that blocks G1 cyclin-Cdk complex activity.  Cells cannot move from G1 into the S phase which gives cells time to repair

 damaged DNA.

 

Term
What happens if Cell damage is beyond repair?
Definition

If the damage is beyond repair, or if the cell has alreadypassed the G1 checkpoint, p53 triggers apoptosis by aninternal pathway.  p53 recruits Bax (Bcl-2 family member)which forms homodimers that facilitate the release of cytochrome c from mitochondria.  Cytochrome c with

 Apaf-1 activates caspases which kill the cell.

Term
What does human papillomavirus do?
Definition

Human papillomavirus encodes for protein E7 which

 inactivates the Rb protein so that it no longer binds to the

 E2F transcription factor (refer to handout).  E2F facilitates

 the transcription of genes required for DNA synthesis

 leading to cell proliferation and cervical cancer (fig 20-43).

Term
IgG
Definition
Typical antibody found in blood sometimes at high concentrations. Tail regions can bind to macrophages for phagocytic uptake. can also cross the placenta during pregnancy.
Term
IgA
Definition
Found in tears and saliva. consists of 2 IgA monomers a J chain and a secretory component which probably protects the molecule from degredation by proteases.
Term
IgM
Definition
Found on immature Bcell surfaces, also 1st antibody to be secreted into the blood upon antigen exposure. made of 5 IgM subunits held together by disulfide bridges and a single j chain.
Term
IgE
Definition
Found on most mast cells (tissues) and basophils (blood) by specific Fc receptors. Antigen binding causes release of cytokines and histamine resulting in capillary dialation and increased permeability.
Term
IgD
Definition
Antibody class exhibited on B-lymphocyte cell surfaces.
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