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Botany
Lecture Notes Ch 1 - 6
118
Biology
Undergraduate 4
10/18/2008

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Term
Ecology
Definition
resource dealing with specifics. Science of how plants interact. Higher concentration of Rubisco,chlorophyll.
Term
what are non-scientific ways of knowing things?
Definition
Scientific Method, observation, faith, aesthetic way. democractic vote.
Term
What are the 3 different experiment types?
Definition
Manipulative, Natural, Observational.
Term
What are the limitations on Manipulative Experiments?
Definition
Artifacts, Scale.
Term
What is an artifact?
Definition
a side effect outcomes that are not a result of the experimental manipulation.
Term
What are the limitations on Observational Experiments?
Definition
many factors can vary
Term
What are the limits on Natural Experiments?
Definition
many changes take place.
Term
What is wrong with the Poppylarian approach?
Definition
It ignores accumulation of data over time, Controversy is important.
Term
How do scientists deal with ecological studies varying between each other?
Definition
- looking at the results to see if they mean the same thing.
- synthesizing results to make a meta-analysis.
Term
what is a Habitat?
Definition
the kind of environment that an organism usually lives in.
Term
abiotic and biotic are examples of what?
Definition
a habitat
Term
define Micro habitat
Definition
conditions in the immediate surroundings of a an individual plant [or organism]
Term
Define Aut Ecology
Definition
study of simple species in isolation
Term
what is the plight of a plant?
Definition
Getting energy and materials
Term
What do light reactions generate?
Definition
NADPH and ATP
Term
What do Carbon fixation reactions use?
Definition
NADPH and ATP used to fix Carbon
Term
Define Functional Ecology
Definition
how the biochemistry and physiology of individual plants determines their responses to their environments.
Term
Define physiological ecology
Definition
focuses on physiological mechanisms underlying whole-plant responses to the environment.
Term
where does photosynthesis occur in a plant?
Definition
Term
What does the total Carbon accumulated by the plant depend upon?
Definition
leaf area, total leaf area of the plant, length of time leaves live for
Term
What are the three photosynthetic pathways?
Definition
c3, c4 and CAM
Term
Describe the Calvin Cycle
Definition
part of C3 photosynthesis.
CO2 enters stomata, Rubisco catalyzes CO2 and RuBP which makes two, 3 C molecules of 3 PGA. Fructose and Glucose are formed.
Term
Describe C3 photosynthesis
Definition
Calvin Cycle takes place.
Term
What are the two types of reactions that Rubisco can catalyze?
Definition
Photosynthesis, and PhotoRespiration
Term
what is PhotoRespiration?
Definition
Oxygen is taken up instead of CO2, by the plant. (favored at higher temps)
Term
When do C3 plants have higher photosynthetic rates?
Definition
Higher CO2 concentration
Term
Describe C4 photosythesis
Definition
CO2 from atm captured using PEP, forms a 4C acid,OAA. CO2 removed from acid, CO2 used via Calvin Cycle.
Term
What are the 3 different types of C4 photosynthesis?
Definition
NADP-me, NAD-me, PEP-ck.
Term
How are C4 leaves shaped? Where do the C4 and C3 reactions take place?
Definition
Kranz anatomy (wreath). Mesophyll. Bundle sheath cells.
Term
C4 plants have what in comparison to C3 ?
Definition
higher max rate of photosynthesis. higher temperature optimum, don't become light saturated even in full sunlight because CO2 uptake not limited by Rubisco. higher Nitrogen Use Effeciancy. water use efficiency.
Term
what is the cost of C4 photosythesis?
Definition
Energy in the form of ATP.
Term
CAM photosynthesis
Definition
open stomata at night. CO2 captured by PEP carboxylase. organic acids accumulate. during day stomata close. Acids decarboxylazed, CO2 for carbon cycle.
Term
CAM plants differ from C4 and C3 plants how?
Definition
stronger structure to support vacuoles, slower C accumulation,higher H2O use efficiancy.
Term
Where does PEP carboxylase come from?
Definition
glycolysis. (all organisms with mitochondria)
Term
Ephiphytes
Definition
plants that rely for support on other plants, generally living on trees, but depend on minerals deposited from the ATM.
Term
what is LMA
Definition
specific leaf mass
Term
sun leaves and shade leaves differ how?
Definition
smaller leaf area, thicker structure. sun-higher stroma density. smaller leaf area. less chlorophyll. more water.
Term
How do bryophytes differ from ohter land plants?
Definition
-water moves by diffusion.
-no specialized water transport organs.
-haploid gametophyte reproduction
Term
what is Water Potential?
Definition
ability of a plant to take up water.
Term
Osmotic Potential Formula
Definition
φ = φop + φpp + φmp + φgp
Term
define Osmotic Potential
Definition
% solutes dissolved in water
Term
Define Pressure Potential
Definition
hydrostatic or pneumatic pressure in the system. (cell water, etc)
Term
Matric Potential
Definition
bound water
Term
Why is Osmotic Pressure negative?
Definition
solutes reduce the capacity of water to do work
Term
What are some adaptations to water "stress"?
Definition
xerophytes, stomatal crypts, stomatal responsiveness, amphistomatous leaves, sclerophyllus leaves, long fibrous root systems, taproots, arial roots
Term
Define Xerophytes
Definition
Desert Plants
Term
Define a stomatal crypt
Definition
stomata recessed into leaves so that the water must travel further to reach them. Increases resistance to water loss
Term
define amphistomatous
Definition
have stomata on both sides of leaves
Term
define sclerophyllus leaves
Definition
tough and leathery
Term
why are fibrous root systems advantagous?
Definition
form a dense network, can reach out out far into the soil to get water and nutrients. (monocot)
Term
Can plants control their temperature?
Definition
Yes on a small scale, by controlling their transpiration rates. Leaf movements. reflectances. growth environment.
Term
define Temperature
Definition
measure of ave. kinetic energy of molecules in a substance.
Term
Radiant energy is exchanged by what organisms?
Definition
Everything. photons exchanged
Term
Define Emissivity
Definition
heat emitting efficiency of an object. reflects all energy = perfect black body.
Term
what plants generate heat?
Definition
Skunk cabbage, alpine flowers
Term
why can't leave store much heat?
Definition
They're usually too small
Term
What is the energy budget formula?
Definition
Rn - H - (lambda)E = 0

Radiant heat into leaf
H - conduction plus convection loss
latent heat loss
Term
What are some adaptations for regulating temperature?
Definition
Pubescence, Leaf Angles, Waxy coatings, Reflective Spines, Cold air temp, frost tolerance
Term
Define Soil
Definition
Mineral particles from rock consisting of sand silt and clay, along with organic matter, and other minerals, organisms.
Term
Define soil structure
Definition
physical arrangement of particles into larger aggregates or peds.
Term
what are characteristics of clay particles?
Definition
large surface area, - charged ions, minerals bound between layers, leaching removes cations making them unavailable to plants.
Term
What are characteristics of soil PH?
Definition
- varies from 3.5 (pine NJ) to 10 (grasslands S US), crops grow best in slightly acidic, effects cation availability, extremely acidic soils easily leeched.
Term
What ions contribute to soil acidity?
Definition
H+ and AL3+
Term
Soil Horizons
Definition
O, A, B, C
Term
Name the plant Macronutrients
Definition
N P K C H O2 Ca Mg S
Term
Where is percent base saturation high? Why
Definition
arid reasons. no leaching of cations
Term
What is Nitrogen Fixation and who does it?
Definition
conversion of N2 gas to NH3

legumes, ceanosis, lotus scoparius
Term
How does N fixation occur in plants?
Definition
Symbiosis with bacteria in nodules

free living cyanobacteria
Term
Phosporus
Definition
second most limiting nutrient. no atm pool. parent material decomp.
Term
What is Nutrient use efficiency?
Definition
ratio of photosynthetic productivity to the concentration of a nutrient.
Term
Photosynthetic leaf nitrogen use formula
Definition
NUE leaf = Amass to N concentration)
Term
Whole plant NUE formula
Definition
NUE plant - g biomass (dry)/unit N
Term
What characteristics are there for plants with long MRTs
Definition
nutrient conserving, evergreen, greater tissue life span, specific leaf mass, nutrient resorbtion effeciency.
Term
do evergreens or deciduous plants grow in nutrient poor soils?
Definition
evergreen
Term
What are the two types of Micorrhiza?
Definition
Endo and Ecto
Term
What are the three groups of Ectomycorrhizae?
Definition
arbuscular, ericoid, and orchidaceous.
Term
How are Micorrhizae important to plants P absorbtion?
Definition
increase root surface area, acidify soil, transport ions.
Term
Define Plant population dynamics
Definition
tracking the changes in numbers, composition, and spatial dispersion.
Term
what 2 factors influence population change?
Definition
Density dependent and density independent factors
Term
Formula for the change in population size
Definition
N(t+1) = Nt + Bt -Dt + Ie + Et
Term
What is a Genet?
a Ramnet?
Definition
new distinct gene type.
individuals that are physiologically distinct by not necessarily a genet.
Term
What is a stage of a plant?
Definition
seeds, non-reproductive individuals, size of plants, age. Life stages
Term
what is a structure of a plant?
Definition
relative frequency of stage. Stage must be defined.
Term
why are sizes of plants more useful than stages?
Definition
plants can change stage. (ex - seedlings after a fire that burnt the larger plant down to nothing.)
small trees can be old.
Term
Define Fecundity
Definition
Number of seeds produced
Term
What is the connection between evolution and ecology?
Definition
v<------------------>v
Ecology Evolution
^<----------------->^
Physiology
Term
How do we test for Adaptation>?
Definition
all hypothesis must be tested
Term
What is the problem with Just So Stories?
Definition
other processes may be responsible for traits. adaptations occured long ago. genetic drift and nuetral mutation occur
Term
Define Natural Selection
Definition
differential reproductive success due to heritable traits. this is the antithesis of chance!
Term
why is variation important?
Definition
without variation, evolution would not continue
Term
Define Phenotype
Definition
physical morphology of an organism
Term
Define Genotype
Definition
Genetic information, DNA sequence
Term
Phenotypic plasticity
Definition
same genetic individual may end up with different phenotypes if their environment is changed.

Individuals with the same genotype grow up in the same environment may turn out completely different than one another
Term
What are the 3 conditions (things needed) for Evolution?
Definition
Phenotypic Variation
Heritable phenotypes
fitness differences
Term
Name the Fitness Differences
Definition
Fecundity
Fertility
Survivorship
Term
What are the two parts to Evolution?
Definition
Phenotypic Selection
Genetic response
Term
Define Specialization in plants
Definition
plants become adapted to certain environment
Term
Define Intermediate Phenotype
Definition
persists through time, not specialized
Term
Local Adaptation
Definition
plants adapt to live in a local environment.
ex - plants tolerate heavy metals in mine tailings.
Term
What is a Niche?
Definition
Range of environmental conditions where plants can grow.
Term
What are the two niche types related to patterns of adaptation?
Definition
Fundamental - where a plant could grow

Realized - where a plant does grow
Term
What are processes that increase genetic variation?
Definition
Hybridization
Polyplody
subfunctionalization
Term
Define Hybridization
Definition
it amplifies genetic variation
Term
Define Polyplody
Definition
whole genetic duplication
Term
Define subfunctionalism
Definition
original is preserved, copy is specialized.
Term
Name 3 processes that decrease variation in a population.
Definition
genetic drift
specialization
Environmental variability
Term
What is an Ecotype?
Definition
populations of a species from different habitats or locations that posesses genetically based differences in appearance and function.
Term
what causes speciation?
Definition
reproductive isolation, no gene flow across species
Term
Name the three types of Speciation
Definition
alaptric
synpatric
Parapatric
Term
Define Alptric speciation
Definition
populations in 2 seperate geographic places, isolated. [animals]
Term
Define Synpatric speciation
Definition
speciation w/in the same geographic area. plants
Term
Define Parapatric Speciation
Definition
adjacent populations
Term
What is the biological species concept?
Definition
species as a group of actually or potentially interbreeding organims that are reproductively isolated from other such groups.
Term
What is polyploidy?
Definition
the entire set of chromosomes is duplicated. Results in two or more copies of the genome in each cell.
Term
Define Allopolyploid.
Definition
polyploidy resulting from the union of gametes from individuals of different species.
ex - Mule and a Horse = donkey
Term
Define Autopolyploidy
Definition
Polyploidy resulting from the gametes of two same species organisms.
Term
What is the Triploid Bridge?
Definition
Triploid gamete is formed, then it forms either a diploid or haploid
Term
Hybridization of species
Definition
new genetic combinations created. liger, human chimp hybrid. Helianthus and Brassica
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