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Boles - Biochem II - Midterm
Chapter 17 - 21
76
Biochemistry
Undergraduate 4
03/06/2013

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Term
Pathways that can be either anabolic or catabolic depending on the energy needs of the cell.
Definition
Amphibolic
Term
These small organic compounds are required in the diet of higher organisms and are transformed into coenzymes.
Definition
Vitamins
Term
________ is a metabolic process in which the varied and complex macromolecules are synthesized from simpler precursors.
Definition
Anabolism
Term
True or False: Catabolism is reductive, but anabolism is oxidative.
Definition
False
Term
The _______ is the comlete set of low-molecular weight molecules present in an organism under a given set of circumstances.
Definition
Metabolome
Term
The Type IV isozyme of Hexokinase is active at __________ glucose levels allowing the liver to respond to rapid changes in glucose concentration.
Definition
Higher
Term
Name the glycolytic enzymes which catalyze substrate level phosphorylations.
Definition
Phosphoglycerate Kinase
Pyruvate Kinase
Term
What is the role of fructose-2,6-bisphosphate?
Definition
Activates phosphofructokinase, restoring the dependence of enzyme activity on substance concentration
Term
SEven of the ten reactions in the glycolytic pathway have free energy values close to zero. What does this tell us about those reactions?
Definition
They are near equilibrium and are readily reversible reactions, but they are not control points for regulation.
Term
Which of the following is not a metaboliccaly irreversible enzymatic reaction of glycolysis?
A. Pyruvate kinase rxn
B. PFK rxn
C. Hexokinase/Glucokinase rxn
D. None
Definition
D. None
Term
Glycolysis produces a net of ______ ATP per molecule of glucose.
Definition
2
Term
This protein transports Pyruvate across the inner mitochondrial membrane into the matrix.
Definition
Pyruvate Translocase
Term
What is the molecular weight cut-off for molecules passing through the outer mitochondrial membrane?
Definition
10,000 g/mol or 10 kDa
Term
What are the components of pyruvate dehydrogenase complex?
Definition
Dihydrolipoamide dehydrogenase
pyruvate dehydrogenase
dihydrolipoamide acetyltransferase
Term
True or False: Many of the enzymatic reactions in the TCA cycle are substrate level phosphorylation.
Definition
False
Term
What inhibits isocitrate dehydrogenase? Activates it?
Definition
ATP and NADH; ADP and NAD+
Term
True or False: In the ETC, electrons are eventually passed from NADH and FADH2 to O2, where O2 is the terminal electron acceptor.
Definition
True
Term
Which of the following is not a lipid soluble or lipid associate "mobile electron carrier?"
A. Cyt c
B. UQ
C. UQH2
D. None
Definition
D. None
Term
FADH2 provides electrons to which complex (I, II, III or IV) in the ETC?
Definition
II
Term
Which component of the pyruvate dehydrogenase complex functions as a "flexible swinging arm" as it transfers the rxn intermediate between active sites?
Definition
Lipoamide
Term
Which complex (I, II, III or IV) does not directly participate in the mitochondrial proton gradient?
Definition
II
Term
In mitochondria, protons are pumped from the _____ to the ______.
Definition
mitochondrial matrix; intermembrane space
Term
In complex III, UQH2 passes electrons to ___________ for transfer to complex IV.
Definition
cyt c
Term
True or False: The Qn site of complex III feeds the UQH2 pool with protons from the matrix side.
Definition
True
Term
This enzyme is a membrane protein that couples the citric acid cycle to the ETC.
Definition
Succinate dehydro
Term
The F1 portion of ATP Synthase has three distinct binding sites. What are they?
Definition
Open, loose and tight
Term
As part of the function of ATP Synthase, transported protons flow from the inlet half-channel to ____ residues.
Definition
Asp61
Term
Carbon assimilation occurs in the ______ reactions.
Definition
Dark
Term
Photosystem I and PSII are embedded in the __________
Definition
thylakoid membrane
Term
True or False: Protons are pumped from the stroma to the lumen of the thylakoid.
Definition
True
Term
The membrane associate mobile carrier of electrons in photosynthesis is ________.
Definition
plastocyanin
Term
In photosynthesis, electrons for transport are obtained via the oxidation of _________.
Definition
H20
Term
True or False: Photosynthetic ATp synthesis occurs in the lumen.
Definition
True
Term
In photosynthesis, electrons flow from H20 and ultimately to ________.
Definition
NADP+
Term
True or FAlse: Rubisco, rubisco activase, and several Calvin cycle enzymes are more active at acidic pH.
Definition
False
Term
Which Calvin Cycle enzyme converts Glucose-6-Phosphate to Glucose?
Definition
Glucose Phosphatase
Term
In plants, solar energy is captured in chemical form as __________ and _______.
Definition
NADPH and ATP
Term
True or False: Photosystem I splits H2O, produces O2, and feeds the electrons released into the associated ETC.
Definition
False
Term
The oxidation of H2O to O2 takes place within the ______________.
Definition
oxygen-evolving complex
Term
Increasing concentration of which two metabolites shift Pyruvate towards gluconeogenesis rather than the TCA cycle?
Definition
ATP and Acetyl-CoA
Term
The reaction that initiates gluconeogenesis is catalyzed by which enzyme?
Definition
pyruvate carboxylase
Term
_________, a product of lipid catabolism, can be converted into ketone bodies.
Definition
Acetyl-CoA
Term
Glycogen phosphorylase cleaves glucose from the ________ of glycogen molecules.
Definition
nonreducing ends
Term
Glucose is exported to the circulation by __________.
Definition
GLUT2
Term
__________, a second messenger, activates glycogen breakdown and glycolysis in response to insulin.
Definition
cAMP
Term
The pentose phosphate pathway provides a constant supply of _________ in the first few reactions.
Definition
NADPH
Term
Ribulose-5-Phosphate can be converted to _________ if the cell requires the synthesis of nucleic acids.
Definition
Ribose-5-Phosphate
Term
__________ is centrally involved in the reciprocal regulation of glycolysis and gluconeogenesis.
Definition
Fructose-2,6-bisphosphate
Term
Glycogen particles are built around a single protein called __________.
Definition
glycogenin
Term
In addition to AMP, phosphorylate Glycogen Synthase is activated by ______.
Definition
glucose-6-phosphate
Term
This 29-residue peptide stimulates glycogen breakdown.
Definition
Glucagon
Term
_________ is the donor of glucose units for glycogen synthesis.
Definition
UDP-Glucose
Term
How can NAD+ be made available to glycolytic enzymes under anaerobic conditions?
Definition
In oxygen depleted muscle, NAD+ is regenerated via the lactate dehydro rxn, which oxidizes NADH to NAD+
Term
T or F: Phosphorylation of glucose prevents it from exiting the cell.
Definition
True
Term
True or False: Hexokinase IV (Glucokinase) is only subject to feed-back allosteric inhibition at very high substrate conc. due to its high Km value.
Definition
False
Term
Pyruvate Kinase is inhibited by which molecules? Activated by?
Definition
ATP and acetyl-CoA, fructose-1,6-bisphosphate; AMP
Term
What is the primary allosteric activator of phosphofructokinase?
Definition
Fructose-2,6-bisphosphate
Term
_______, a decomposition product of triglycerides, can be used to fuel glycolysis.
Definition
Glycerol
Term
How does pyruvate get into the matrix of the mitochondria.
Definition
1) It diffuses through the outer membrane and 2) is then transported across the inner membrane by pyruvate translocase.
Term
How can succinate dehydrogenase activity be measured spetrophotometrically?
Definition
The FAD+ absorbs color, while FADH2 does not. What the absorbance change over time.
Term
T or F: ATP and NADH are negative regulators of isocitrate dehydrogenase.
Definition
True
Term
______ is the process used by plants to grow using acetate as a food source.
Definition
glyoxylate cycle
Term
The reaction by which Acetyl-Coa is formed is called _______.
Definition
condensation
Term
This enzyme serves as a link between the TCA cycle and the ETC.
Definition
succinate dehydro
Term
Which of the following does not catalyze an anaplerotic reaction in the TCA cycle?
A. PEP carboxylase
B. Pyruvate carboxylase
C. Malate carboxylase
D. Malic enzyme
Definition
C. Malate Carboxylase
Term
T or F: Coenzyme Q is a membrane associated "mobile electron carrier" in the ETC.
Definition
FAlse
Term
Label the variables: G0'=-nFE0
Definition
Free energy change, # of e-, Faraday's constant, diff in redux potentials
Term
T or F: the Qn site of complex III passes electrons to Cyt c and the Qn site, and also transports protons into the inter membrane space.
Definition
True
Term
______ binds on the cytosilic face of Complex IV, transferring elctrons through the heme centers to reduce O2
Definition
Cyt c
Term
T or F: the malate-aspartate shuttle uses malate to carry electrons across the inner mito membrane to make cytosolic NADH available to the ETC.
Definition
True
Term
Describe what must occur to generate fully active Rubisco.
Definition
1)Rubisco activase, activated by light and ATP, causes rubisco to release RuBP
2) Carbamylation and Mg binding then activate Rubisco
Term
PSII(P680)cycles through _____ oxidation states, releasing 1 e- and 1 H+ in each step.
Definition
5
Term
_________ is a membrane protein that shuttles electrons from PSII to cyt b6f.
Definition
Plasitquinone
Term
________ carries electrons from cyt b6f to PSI.
Definition
plastocyanin
Term
What is the final CO2 acceptor in carbon fixation?
Definition
Ribulose-1,5-bisphosphate
Term
T or F: Transporter T1 takes glucose-6-phosphate into the ER, where it is hydrolyzed by G6P phosphatase.
Definition
True
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