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Biosystems
Enzymes
37
Biology
Graduate
10/30/2011

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Term
enzyme
Definition
-catalysts that accelerate the rates of chemical reactions in biological environments
Term
catalyst
Definition
-anything that can lower the activation energy without being consumed by the reaction
Term
importance of enzymes
Definition
-necessary for life
-genetic diseases (cystic fibrosis)
-diagnostic tools (creatine kinase)
-drugs that interact with enzymes (statins)
-food processing and chemical industry
-biological weapons
Term
enzyme features
Definition
-MOST enzymes are proteins
-usually make or break a covalent bond
-highly selective
-highly specific
Term
high selectivity
Definition
-catalyzing only 1 reaction
Term
high specificity
Definition
-bind only 1 specific substrate
Term
within the active site and participate in catalytic reactions and help hold substrate in place
Definition
amino acid side chains
Term
lock and key model year
Definition
1890
Term
induced fit model year
Definition
1958
Term
non-covalent interactions
Definition
-electrostatic
-h-bonds
-van der waals
-hydrophobic
Term
random walk
Definition
molecules in a liquid will collide and bounce off one another
Term
rate of enzyme-substrate contact depends on
Definition
movement and concentration of substrate
Term
enzymes speed up reactions by selectively stabilizing the
Definition
transition state
Term
oxidoreductase
Definition
-catalyze oxidation-reduction reaction
-oxidation state of one or more atoms is altered
-involves transfer of 1-2 electrons
-95% of the time oxygen or hydrogen are added/removed
-ex. disulfram
Term
transferase
Definition
-catalyze transfer of molecular groups from a donor to an acceptor
-ex. carboxyl,carbonyl,methyl,phsophoryl,acyl
Term
hydrolase
Definition
-catalyze hydro lysis reactions
-cleavage of bonds is done by addition of water
-CO, CN, OP bonds usually
-ex. Saquinavir (HIV enzyme inhibitor)
Term
lyase (synthase)
Definition
-catalyze the cleavage/formation of CC, CO, CN bonds by other means than hydrolysis/oxidation
-almost always associated with double bonds
-ex. Acetazolamide (Diamox)
Term
Acetazolamide
Definition
-Diamox
-carbonic anhydrase inhibitor
-acute motion sickness
-glaucoma
-edema
Term
isomerase
Definition
-catalyze intramolecular rearrangement
-isomerase-rearranges isomers (move atom)
-mutase-intramolecular functional group (moving molecules)
-ex. quinilone antibiotics(cirpofloxacin/moxifloxican) (DNA gyrase)
Term
ligase (synthase)
Definition
-catalyze covalent bond formation
-require ATP
Term
cofactors
Definition
-additional non protein required for enzyme activity
-metal ions
-coenzymes
Term
metal ions (essential ions)
Definition
-1/3 enzymes require
-metal-activated enzymes
-metalloenzymes
Term
metal activated enzymes
Definition
-metal is loosely bond (reversible)
-usually alkali/alkaline earth metals
-metal plays a role in substrate binding and enzyme structure
-multiple metal binding sites on enzyme
-ex. hexokinase
Term
metalloenzymes
Definition
-metal is TIGHTLY bound-covalent
-usually transition metals
-metal plays a role in catalytic activity
-usually one metal binding site
Term
metal activated cofactors
Definition
-Mg
-Ca
-K
Term
metalloenzymes cofactors
Definition
-Fe
-Zn
-Cu
-Mn
-Co
-Se
Term
coenzymes
Definition
-small ORGANIC molecules
-possess reactive groups that are not found on amino acid side chains
-can act as carriers for substrate molecules
-necessary for enzyme activity but not true catalysts
-chemically changed by reaction
-must be regenerated before being used again
Term
conenzymes more
Definition
-classified based on binding strength (cosubstrates/prosthetic groups)
-most are vitamins
Term
cosubstrates
Definition
-loosely bound
-often transfer mobile metabolic groups or energy source among molecules
-act as substrates
-changed during the reaction,dissociates
Term
prosthetic groups
Definition
-tightly bound
-remain bound during and after reaction
-changed during the reaction
Term
ATP vitamin source
Definition
none, made in body
Term
NAD+ and NADP+ vitamin source
Definition
niacin (vit B3)
Term
coenzyme A vitamin source
Definition
pantothenate (vit B5)
Term
tetrahydrofolate
Definition
folate (folic acid,vit B9)
Term
FMN and FAD vitamin source
Definition
riboflavin (vit B2)
Term
biotin vitamin source
Definition
biotin (vit B7)
Term
retinal vitamin source
Definition
-vitamin A
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