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Biology Term 1
Midterm 1
113
Biology
Undergraduate 1
10/07/2012

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Term
Viral envelope
Definition
A membrane that is derived from host cell membranes and encloses the capsid
Term
Host
Definition
The larger organism in a symbiotic relationship; often provides food and a home for the smaller symbiont
Term
capsule
Definition
A polysaccharide layer that surrounds the cell wall and allows the cell to adhere to substrates or other cells
Term
fimbriae
Definition
The short hairlike appendages of prokaryotic cells that allow them to adhere to things
Term
Host range
Definition
The limited assortment of species that a particular virus can infect
Term
Gram stain
Definition
a staining method that helps to distinguish between gram-negative (more complex cell walls with less peptidoglycan, usually more toxic) and gram-positive (less complex, more peptidoglycan, usually less toxic)
Term
Capsid
Definition
The protein shell that encloses a viral genome
Term
Taxis
Definition
An oriented movement toward or away from a stimulus
Term
Motor (of flagellum)
Definition
The part of the flagellum that is actively moving
Term
Virus
Definition
An infectious particle that is incapable of replication outside of a host cell
Term
Independent assortment
Definition
Different ways that alleles can line up during meiosis
Term
pathogen
Definition
An infectious agent that causes disease or illness in its host
Term
Crossing over
Definition
When alleles line up, parts of the chromosomes can "cross over" and exchange genetic material
Term
symbiosis
Definition
The relationship between two organisms living in direct and intimate contact
Term
Homologous chromosomes
Definition
Homologous chromosomes are very similar and line up with each other during meiosis
Term
Spirochetes
Definition
spiral shaped bacteria
Term
Diploid
Definition
A cell containing two sets of chromosomes (one from each parent)
Term
Gram positive bacteria
Definition
less complex, more peptidoglycan, usually less toxic
Term
telophase
Definition
The final stage of mitosis; cytokinesis has begun
Term
Haploid
Definition
A cell containing only one set of chromosomes (IE sperm)
Term
Proteobacteria
(Alpha, Beta, Gamma, Delta, Epsilon)
Definition
Gram-negative
Alpha: associated with eukaryotic hosts, mitochondria evolved from alpha proteobacteria
Beta: Nutritionally diverse
Gamma: Sulfur bacteria
Delta: Slime-secreting
Epsilon: pathogenic to animals
Term
Reductional division
Definition
Meiosis I - separates homologous chromosomes
Term
Chlamydia
Definition
Bacterial parasites that can live only within animal cells, gram-negative, lack peptidoglycan
Term
Cytokinesis
Definition
The completion of telophase, the cell wall pinches into two separate cells
Term
Cyanobacteria
Definition
Photosynthetic bacteria
Term
Bacteriophage
Definition
A virus that infects bacteria
Term
Euryarchaeotes
Definition
Broad environmental range archea
Term
anaphase
Definition
Daughter chromosomes pulled to opposite ends of the cell
Term
Crenarchaeotes
Definition
Thermophilic archaea
Term
metaphase
Definition
chromosomes line up at cell equator
Term
methanogen
Definition
Use CO2 to oxidize H2, producing methane waste. Poisoned by O2
Term
prometaphase
Definition
nuclear envelope falls apart, spindles form
Term
acidophilic
Definition
Live in highly acidic conditions
Term
prophase
Definition
chromosomes condense
Term
halophilic
Definition
Live in highly saline enviroments
Term
Rhizobium
Definition
Gram-negative soil bacteria that fix nitrogen
Term
Spindle
Definition
spindles pull the chromatids apart during anaphase
Term
thermophilic
Definition
Live in very hot environments (near boiling)
Term
Sister chromatids
Definition
Chromosome x shaped, made up of two sister chromatids
Term
Horizontal Gene Transfer
Definition
Transfer of genes from one species to another
Term
Meiosis
Definition
Creates cells with only half of the chromosomes of parent cells. These cells are then used in reproduction
Term
biofilm
Definition
A surface-coating colony of one or more prokaryotic species that engage in metabolic cooperation
Term
Mitosis
Definition
Nuclear division in eukaryotic cells that creates two identical daughter cells
Term
heterocyst
Definition
A specialized cell that engages in nitrogen fixation in some filamentous cyanobacteria
Term
genome
Definition
The genetic material of an organism or virus
Term
Filament
Definition
The tail like part of the flagella
Term
mitochondrion
Definition
organelle that serves as the site of cellular respiration; uses oxygen to break down organic molecules and synthesis ATP
Term
endosymbiosis
Definition
A process in which a unicellular organism engulfs another cell, which lives within the host cell and eventually becomes an organelle
Term
Nitrogen fixation
Definition
conversion of N2 to ammonia, carried out by some prokaryotes
Term
Facultative anaerobe
Definition
An organism that uses oxygen when it it present and switches to anaerobic respiration if oxygen is not present
Term
chloroplast
Definition
An organelle found in plants and photosynthetic protists that absorbs sunlight and uses it to drive the synthesis of organic compounds
Term
Obligate anaerobe
Definition
An organism that must live away from the presence of oxygen
Term
nucleus
Definition
The organelle in eukaryotic cells that contains genetic material
Term
Anaerobe
Definition
An organism that does not (have to) use oxygen to live
Term
membrane-bound organelle
Definition
Organelles are, by definition, membrane bound. They have a specific, specialized function within a cell
Term
Lytic cycle
Definition
The process by which a virus enters a cell, forces the cell to reproduce viral DNA, and then breaks the cell open to release new viruses
Term
Aerobe
Definition
An organism that uses oxygen to live
Term
transduction
Definition
Bacterial DNA is transferred between bacteria by means of a virus
Term
Parasite
Definition
An organism that feeds off of another organism, harming the other organism in the process
Term
emerging disease
Definition
A "new" disease that comes from the rapid evolution of infectious agents. A host of other environmental factors can also contribute to emerging diseases, ie reduced immunity
Term
Saprobe
Definition
Organism that feeds off of dead of decaying matter
Term
provirus
Definition
A viral genome that is permanently inserted into a host genome, causing passive replication via the host cells' replication
Term
Chemoheterotrophs
Definition
An organism that requires organic molecules for both energy and carbon (ex: humans)
Term
retrovirus
Definition
Replicates its own RNA into DNA that can be inserted into a host cell's chromosome
Term
Photoheterotrophs
Definition
An organism that uses light to generate ATP but must consume organic molecules for its carbon
Term
Hook
Definition
The part of prokaryotic flagellum that angles the flagella so that it functions as a propellor
Term
HIV
Definition
human immunodeficiency virus, causes AIDS, retrovirus
Term
Chemoautotrophs
Definition
an organism that obtains energy by oxidizing inorganic substances and needs only CO2 as a carbon source
Term
prophage
Definition
A phage genome that has been inserted into a specific site on a bacterial chromosome
Term
Photoautotrophs
Definition
An organism that harnesses light energy to drive the synthesis or organic compounds from CO2
Term
Lysogenic cycle
Definition
Breaks off from the lytic cycle - virus senses that a cell will reproduce soon and inserts its DNA into the host's chromosome: viral DNA is replicated by the cell and spread via cell division
Term
emergent property
Definition
New properties that arise in organisms as complexity increases
Term
Bacteria
Definition
Part of "super domain" prokarya
Term
Peptidoglycan
Definition
Sugar polymer that helps make up bacterial cell calls
Term
Kingdom
Definition
second broadest taxonomic category (after domain)
Term
sex pili
Definition
cilia-like appendages on an F-plasmid containing bacterial cell that allows DNA to be transferred from one bacterial cell to another
Term
Domain
Definition
The largest taxonomic category. Contains bacteria, archaea, and eukaryia
Term
F plasmid
Definition
(Plasmid: the small, circular strand of DNA that exists outside of bacterial DNA.) The F plasmid codes for fertility (sex pili)
Term
Taxon
Definition
any given named taxonomic unit
Term
conjugation
Definition
Direct transfer of prokaryotic DNA between two cells that are temporarily joined. When the two cells are different species, this is called "horizontal gene transfer"
Term
Hierarchical Classification
Definition
Organisms grouped into progressively larger and broader categories
Term
Archaea
Definition
Part of "super doman" prokarya
Term
transformation
Definition
A change in genotype/phenotype due to assimilation of external DNA by a cell
Term
Binomial nomenclature
Definition
Two part latin names for each species - genus + species epithet
Term
Endospore
Definition
A thick coated, resistant cell produced by some bacterial cells in harsh conditions. Endospores are nearly impossible to kill and have little to no metabolic activity, allowing them to "return to life" after long periods
Term
stromatolite
Definition
Layered rock that forms as a result of prokaryotic organisms binding together thin films of sediment
Term
Origin of Replication
Definition
site where the replication of a DNA molecule beings
Term
eukaryote
Definition
organisms will cells that contain a nucleus and organelles (membrane bound parts)
Term
Binary fission
Definition
Asexual reproduction by "dividing in half"
Term
prokaryote
Definition
Prokaryotic cells lack membrane bound oreganelles
Term
Plasmid
Definition
small, circular strand of DNA that exists outside of bacterial DNA
Term
hypothesis
Definition
"educated guess"
Term
oxygen revolution
Definition
autotrophic organisms evolved that thrived in a CO2 rich atmosphere. There organisms released O2, which led to the rapid oxygenation of the atmosphere
Term
Chromosome
Definition
The cellular structure that contains an organism's DNA
Term
ribozyme
Definition
an RNA molecule that functions as an enzyme
Term
cytoplasm
Definition
The contents of the cell bounded by the plasma membrane; in eukaryotes, the portion of the cell outside of the nucleus
Term
RNA
Definition
Single stranded genetic material
Term
ribosome
Definition
rRNA and protein molecules that function as a site for protein synthesis in the cytoplasm
Term
DNA
Definition
Double stranded, paired genetic material
Term
Cell wall
Definition
Protective boundary that surrounds the rest of the cell. Made of polysaccharides (plants and protists); chitin (fungi); peptidoglycan (bacteria)
Term
vesicle
Definition
membranous sac in the cytoplasm of a eukaryotic cell
Term
Eukarya
Definition
domain that includes all eukaryotes
Term
reducing atmosophere
Definition
Early earth's oxygen-deprived atmosphere
Term
Plasma membrane
Definition
exists at cell's boundary and regulates chemical transfer
Term
protocell
Definition
"pre-cells" with membrane structure and distinct internal chemistry
Term
Nucleoid region
Definition
Area where DNA in concentrated in a prokaryotic cell
Term
macromolecule
Definition
A large molecule formed by the joining of smaller molecules (ie polysaccharides, proteins, & nucleic acids)
Term
Flagellum
Definition
long cellular appendage used for locomotion
Term
Miller-Urey Apparatus
Definition
Mimicked early earth environment, building blocks of life formed. There is some controversy surrounding whether or not early earth conditions were adequately mimicked
Term
Molecular systematics
Definition
Uses nucleic acids and other molecules to infer evolutionary relationships between species
Term
abiotic synthesis
Definition
arranging of nonliving particles that led to early forms of life
Term
taxonomy
Definition
the discipline of naming and classifying life forms
Term
Gram-negative bacteria
Definition
more complex cell walls with less peptidoglycan, usually more toxic
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