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Biology I
Exam Number 3
72
Biology
Undergraduate 4
04/12/2011

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Term
Thylakoid Membrane
Definition
internal membrane arranged in flattened sacs. Contain chlorophyll.
Term
Grana
Definition
stacks of thylakoid membraines.
Term
Stroma
Definition
semiliquid substance surrounding thylakoid membranes.
Term
Photon
Definition
particle of light. Acts as discrete bundle of energy inversely proportional to wavelength of light.
Term
Photoelectric Effect
Definition
Removal of an electron from a molecule by light. Occurs when photons transfer energy to electrons.
Term
Structure of Pigments
Definition
Porphyrin ring: complex ring structure with alternating double and single bonds. Magnesium ion in center of ring. Photons excite electrons in the ring and electrons are shuttled away from the ring.
Term
Accessory pigments
Definition
Chlorophyll b, carotenoids, phycobiloproteins.
Term
Light-Dependent Reaction steps (4)
Definition
1. Primary photoevent - a photon of light is captured by a pigment molecule.
2. Charge separation - energy is transferred to the reaction center; an excited electron is transferred to an acceptor molecule.
3. Electron transport - electrons move through carriers to reduce NADP+.
4. Chemiosmosis - produces ATP.
Term
In chloroplasts, two linked photosystems used in noncyclic photophosphorylation:
Definition
1. Photosystem I - Reaction center pigment (P700) with peak absorption at 700nm.
2. Photosystem II - Reaction center pigment (P680) peak absorption at 680nm.
Term
Photosystem II acts first:
Definition
1. Accessory pigments shuttle energy to the P680 reaction center.
2. Excited electrons from P680 are transferred to b6-f complex.
3. Electron lost from P680 is replaced by an electron released from the splitting of water.
Term
The b6-f complex:
Definition
is a series of electron carriers.
1. Electron carrier molecules are embedded int eh thylakoid membrane.
2. Protons are pumped into the thylakoid space to form a proton gradient.
Term
Photosystem I: (5)
Definition
1. Receives energy from an antenna complex.
2. Energy is shuttled to P700 reaction center.
3. Excited electron is transferred to a membrane-bound electron carrier.
4. Electrons are used to reduce NADP+ to NADPH.
5. Electrons lost from P700 are replaced from the b6-f complex.
Term
ATP (4)
Definition
is produced via chemiosmosis.
1. ATP synthase is embedded in the thylakoid membrane.
2. Protons have accumulated in the thylakoid space.
3. Protons move into the stroma only through ATP synthase.
4. ATP is produced from ADP+Pi.
Term
Calvin Cycle phases: (3)
Definition
1. Carbon Fixation.
2. Reduction.
3. Regeneration.
Term
Calvin Cycle (4)
Definition
1. Biochemical pathway that allows for carbon fixation.
2. Occurs in the stroma.
3. Uses ATP and NADPH as energy sources.
4. Incorporates CO2 into organic molecules.
Term
Carbon Fixation:
Definition
the incorporation of CO2 into organic molecules - 1st step of Calvin cycle.
1. Ribulose-bis-phosphate(5 carbons) + CO2(1 carbon) -> 2(PGA)(3 carbons).
2. The reaction is catalyzed by rubisco.
Term
Reduction:
Definition
PGA is reduced to G3P (Glyceraldehyde 3-phosphate)(3C)
Term
Regeneration of RuBP
Definition
G3P is used to regenerate RuBP.
Term
Energy for Calvin Cycle comes from:
Definition
18 ATP molecules
12 NADPH molecules
Term
C4 plants
Definition
1. Use PEP carboxylase to capture CO2.
2. CO2 is added to PEP in one cell type (mesophyll cell)
3. The resulting 4-carbon compound is moved into a bundle sheath cell where the CO2 is released and used in the Calvin cycle.
Term
CAM plants:
Definition
1. CO2 is captured at night when stomata are open.
2. PEP carboxylase adds CO2 to PEP to produce a 4 carbon compound.
3. This compound releases CO2 during the day
4. CO2 is then used by rubisco in the calvin cycle.
Term
Frederick Griffith
Definition
1928, studied Streptococcus Pneumoniae - rat experiment. Called transfer of information 'transformation'.
Term
Avery, MacLeod, & McCarty
Definition
1944 repeated Griffith's experiment using purified cell extracts and found DNA to be the transforming material.
Term
Hershey and Chase
Definition
1952, investigated bacteriophages: viruses that infect bacteria.
Wanted to determine whether it was the DNA or the protein of bacteriophage that was injected into bacteria.
Term
Nucleotide structure:
Definition
1. Nitrogenous base attached to the 1' carbon of deoxyribose.
2. Phosphate group attached to the 5' carbon of deoxyribose.
3. Free hydroxyl group (-OH) at the 3' carbon of deoxyribose.
Term
Chargaff's Rule:
Definition
A = T
C = G
Term
Antiparallel strands in DNA:
Definition
One is oriented 5' to 3' the other 3' to 5'.
Term
Matthew Meselson and Franklin Stahl
Definition
1958 investigated process of DNA replication:
Conservative model
Semiconservative model
Dispersive model
Ecoli grown in isotope of 15N.
See page 21.
Term
DNA replication includes: (3)
Definition
1. Initiation: replication begins at an origin of replication.
2. Elongation: New strands of DNA are synthesized by DNA polymerase.
3. Termination: replication is terminated differently in prokaryotes and eukaryotes.
Term
Helicase
Definition
The double helix is unwound by this enzyme in Procaryotic DNA replication.
Term
Leading Strand
Definition
is synthesized continuously (in the same direction as the replication fork)
Term
Lagging strand
Definition
is synthesized discontinuously creating Okazaki fragments.
Term
Replisome
Definition
Contain enzymes for DNA replication.
Consists of Primosome - composed of primase and helicase.
and 2 DNA polymerase III molecules.
Term
Telomeres
Definition
Repeated DNA sequence on the ends of Eukaryotic chromosomes. Produced by Telomerase.
Term
Telomerase
Definition
contains an RNA region that is used as a template so a DNA primer can be produced.
Term
Mutagens
Definition
chemical and physical agents that damage DNA.
Term
Specific DNA repair
Definition
targeting a particular type of DNA damage.
Term
Non-specific DNA repair
Definition
able to repair many different kinds of DNA damage: Excision repair - to correct damaged or mismatched nitrogenous bases.
Term
Eukaryotic chromosomes:
Definition
Linear Chromosomes composed of chromatin: a complex of DNA and proteins.
Term
Heterochromatin
Definition
not expressed.
Term
Euchromatin
Definition
Expressed regions.
Term
Nucleosome
Definition
DNA wrapped around a core of 8 histone proteins. Spaced 200 nucleotides apart along the DNA.
Term
Solenoid
Definition
coiled nucleosome. Further compacted and radial loops held in place by scaffold proteins which are aided by a complex of proteins called condensin.
Term
Karyotype
Definition
the particular array of chromosomes of an organism.
Term
Kinetochores
Definition
where replicated chromsomes connect to each other.
Term
Cohesin
Definition
complex of proteins holding replicated chromosomes together.
Term
Name the 5 phases of the Eukaryotic cell cycle:
Definition
1. G1 (Gap phase 1)
2. S (Synthesis)
3. G2 (Gap phase 2)
4. M (Mitosis)
5. C (Cytokinesis)
Term
G1:
Definition
time of cell growth.
Term
S phase
Definition
synthesis of DNA (DNA replication) - 2 sister chromatids are produced.
Term
G2
Definition
Chromosomes condense.
Term
Name the five phases of Mitosis
Definition
1. Prophase
2. Prometaphase
3. Metaphase
4. Anaphase
5. Telophase
Term
Cytokinesis
Definition
Cleavage of the cell into equal halves.
Term
Metaphase plate:
Definition
imaginary plane through the center of the cell where the chromosomes align.
Term
G1/S checkpoint
Definition
The cell decided to divide.
Term
G2/M checkpoint
Definition
The cell makes a commitment to mitosis.
Term
Late Metaphase (spindle) checkpoint
Definition
The cell ensures that all chromosomes are attached to the spindle.
Term
Cyclins
Definition
Proteins produced in synchrony with the cell cycle - regulate passage of the cell through cell cycle checkpoints.
Term
Cyclin-dependent kinases(Cdks)
Definition
Enzymes that drive the cell cycle - activated only when bound by a cyclin.
Term
Anaphase-promoting complex(APC)
Definition
activates the proteins that remove the cohesin holding the sister chromatids together at spindle checkpoint.
Term
Platelet-derived growth factor(PDGF)
Definition
triggers cells to divide during wound healing.
Term
Tumor-supressor genes
Definition
Prevent the development of many cells containing mutations(cancer).
Term
Proto-oncogenes
Definition
Some encode receptors for growth factors, some encode signal transduction proteins. Become oncogenes when mutated which can cause cancer when inside a cell.
Term
Meiosis
Definition
Form of cell division that leads to the production of gametes.
Term
Gametes
Definition
Egg and sperm cells. Contain half the number of chromosomes of an adult body cell.
Term
Diploid
Definition
containing 2 sets of chromosomes.
Term
Haploid
Definition
Containing only 1 set of chromosomes.
Term
Meiosis I
Definition
Homologous chromosomes (homologues) become closely associated with each other. (Synapsis).
Term
Crossing over
Definition
Meiosis: genetic recombination between non-sister chromatids.
Term
Chiasmata
Definition
Meiosis: sites of crossing over.
Term
Meiosis differences(4)
Definition
1. Synapsis and crossing over.
2. Sister chromatids remain joined at their centromeres throughout meiosis I.
3. Kinetochores of sister chromatids attach to the same pole in meiosis I.
4. DNA replication is suppressed between meiosis I and meiosis II.
Term
Meiosis produces haploid cells not identical to each other because of crossing over and random alignment of homologues in metaphase I.
Definition
Mitosis produces 2 cells identical to each other.
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