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Biology Exam 1
study of life, scientific method, chemistry, the cell
121
Biology
Undergraduate 1
02/02/2012

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Term
What is Biology?
Definition
The study of life
Term
How do we define life?
Definition

Living organisms:

  • Are organized
  • Adapt
  • Respond to the environment
  • Reproduce and develop
  • Acquire materials and energy

 

Term
Organization
Definition
  • Cell
  • Similar cells form tissues
  • Tissues form organs
  • Organs work in organ systems
  • Organ systems form the "body" 
Term
 Adaptations
Definition
Genetic or behavioral modifications that make an organism better suited for its environment
Term
 Response to Environment
Definition
Organisms can alter their physiology or behavior based on a changing environment
Term
 Reproduce and Develop
Definition
Reproduction can be asexual or sexual
Term
 Acquire Materials and Energy
Definition

Organisms must obtain nutrients (materials) from their environment to produce energy needed at the cellular level

Plants: photosynthesis (sunlight)

Animals: consumption of other organisms

Term
Ecology
Definition

Organization beyond the body:

  • Individual
  • Population
  • Community
  • Ecosystem
  • Biosphere
Term
Taxonomy
Definition
Organizing diversity based on visible characteristics (looking at diversity of all life that has ever existed on earth)
Term
Cladistics
Definition

Organizing life's diversity from the beginning based on genetic differences (phylogenetic systematics)

For understanding evolutionary relationships

Term
Domains
Definition

Largest level of classification

  • Bacteria
  • Archaea
  • Eukarya
Term
Archaea
Definition

Comprised of prokaryotes (before nucleus)

Extremophiles (live in extreme environments-really hot or really cold)

Term
Bacteria
Definition

A domain

Comprised of prokaryotes (before nucleus)

Term
Eukarya
Definition

A domain

Consists of all eukaryotes (with nucleus)

  • Protist
  • Fungi
  • Plantae
  • Animalia
Term
Classification of Species
Definition
Kingdom- Phylum- Subphylum- Class- Subclass- Infraclass- Order- Suborder- Superfamily- Family- Genus- Species
Term
Evolution
Definition
  • A theory
  • Species today are descendants of ancestral species
  • "descent with modification"
  • Mechanisms of evolution are variation and natural selection
Term
Natural Selection
Definition
Individuals with heritable traits best suited for their environment are more likely to survive and reproduce than less well-suited individuals
Term
Evolutionary Adaptation
Definition
Accumulation of favorable traits in a population over time
Term
At what point in organization does life become diverse?
Definition
At the organism level and up
Term
At what point in the organization of life is it uniform?
Definition

At the molecular and cellular levels

  • all organisms consist of cells
  • all organisms have the same genetic code (DNA)
 

 

Term
Who created the original theory on natural selection?
Definition
Charles Darwin in "The Origin of Species"
Term
Science
Definition
  • Uses a specific scientific process
  • Experiments are testable, falsifiable and repeatable
  • Is impartial and doesn't make ethical or moral judgments
Term
Discovery Science
Definition
  • Descriptive (specific to general)
  • Inductive reasoning: deriving generalizations from a large number of observations, often lead to experiments to understand why these things occur
Term
Hypothesis Testing
Definition
  • Experimental (general to specific)
  • Deductive reasoning: logic flows from general premises to the specific results we should expect if the premises are true
Term
Types of Collected Data in Scientific Inquiry
Definition
  • Quantitative- measured
  • Qualitative- observed 
Term
Deductive Reasoning 
Definition
Logic flows from general premises to the specific results we should expect if the premises are true
(general to specific)
Term
Inductive Reasoning
Definition

Using a generalization to describe something after many observations, often lead to experiments to understand why these things occur

(specific to general)

Term
Steps of Scientific Method
Definition
  • Observation/Question
  • Hypothesis
  • Experiment
  • Analysis
  • Conclusion 
Term
Why can past events NOT be tested?
Definition
  • Science can only test things that are manipulatable
  • Whatever happened initially you cannot go back and test
  • You cannot eliminate all possiblities because you cannot go back and test it
Term
Theory (in Science)
Definition
An idea that has been extensively tested, and still has not produced evidence to reject it
Term
Matter
Definition
  • Organisms are composed of this
  • Anything that takes up space and has mass
  • It's made up of elements
Term
Elements
Definition

Substances that cannot be broken down to other substances by chemical reactions

 

Its properties depend on the structure of its atoms

Term
Atoms
Definition
Protons, Neutrons and Electrons
Term
Protons
Definition
Positively charged particles, located in the nucleus of the atom
Term
Neutrons
Definition
Neutral particles, located in the nucleus of the atom
Term
Electrons
Definition
Negatively charged particles, found in orbitals surrounding nucleus
Term
All atoms have a specific number of what?
Definition
Protons in the nucleus
Term
Atomic Number
Definition
Number of protons (up in left corner of periodic table element's boxes) 
Term
What do atoms with the same atomic number have in common?
Definition
Same chemical properties, belong to the same element
Term
Atomic Mass
Definition
Weight of protons and neutrons
Term
Isotopes
Definition
Atoms of the same element that have different atomic mass numbers (different number of neutrons)
Term
Neutral Atoms
Definition
Have the same number of protons and electrons
Term
Ions
Definition
Charged atoms
Term
Cations
Definition
Have more protons than electrons so they are positively charged
Term
Anions
Definition
Have more electrons than protons so they are negatively charged
Term
Compound
Definition

Combination of two or more elements

 

Has characteristics that are different from either of the individual elements

Term
What determines if elements will combine into compounds?
Definition
  • It depends on the number of electrons that are in their outermost shell
  • The innermost can hold 2
  • The next shell can hold 8
  • They meet up with another element to fill their outer shells based on different types of bonds
Term
When are elements most stable?
Definition
The element's outer shell is full
Term
What are the 3 types of bonds between elements?
Definition
  • Covalent
  • Ionic
  • Hydrogen 
Term
Covalent Bond
Definition
  • 2 atoms share a pair of electrons
  • The strongest chemical bond
  • Can be single, double, or triple bonds
Term
Ion
Definition
Atom or molecule with an electrical charge resulting from a gain or loss of one or more electrons
Term
Ionic Bond
Definition
  • One atom steals away an electron from another atom
  • two ions with opposite charges attract eachother, the attraction hold them together (ex NaCl, Na is positive and Cl is negative)
Term
Hydrogen Bond
Definition
  • A hydrogen atom that is already covalently bonded to an electronegative atom is attracted to another electronegative atom
  • Weakest chemical bond
  • Often between polar molecules (unequal sharing)
Term
How do hydrogen bonds work in water?
Definition
The partially negative oxygen from one water molecule is attracted to the partially positive hydrogen of a different water molecule (causing cohesion)
Term
Two Reactions Commonly Seen in Biology
Definition
  • Reduction reaction
  • Oxidation reaction 
Term
Reduction Reaction
Definition
The addition of electrons
Term
Oxidation Reaction
Definition
The removal of electrons
Term
Redox Reaction
Definition
When one compound is oxidized, the other is reduced
Term
4 Most Essential Elements
Definition
  • Hydrogen
  • Oxygen
  • Nitrogen
  • Carbon 
Term
What is special about water?
Definition
  • Polar, has hydrogen bonding between molecules
  • High specific heat (takes a large amount of energy to change its temperature)
  • Less dense as a solid
  • Good solvent 
Term
Polar Molecule
Definition
Has an unequal distribution of charges
Term
Cohesion
Definition
Molecules hold onto each other (ex. Water)
Term
Adhesion
Definition
Molecules hold onto other surfaces (ex. Water)
Term
How does water stabilize air temperature?
Definition
It absorbs heat from warmer air and releases heat to cooler air
Term
[image]
Definition
The hydrogen bonds of water expand when they solidify (become ice)
Term
Why is ice floating important?
Definition
If ice did not float then the whole ocean and all water would freeze thus all life would die because all life needs water (as a liquid) to live
Term
Why is water a good solvent?
Definition
Water is polar so it is able to react with positively and negatively charged molecules (ex. salt dissolving in water)
Term
Hydrophilic
Definition
The compound is able to dissolve in water (salt, sugar)
Term
Hydrophobic
Definition
The compound cannot dissolve in water (fats, oils)
Term
What is the basis of the pH scale?
Definition
The hydrogen ion (H+) aka proton
Term
What determines if something is basic?
Definition
It will have a bunch of Hydroxide Ions (OH-)
Term
Acid
Definition
Substance that releases protons (H+) in water
Term
Base
Definition
Substance that releases hydroxide ions    (OH-) in water
Term
What happens if an acid and base are mixed?
Definition
They will neutralize each other b/c the protons (H+) will combine with the (OH-) making water
Term
Hydronium Ion
Definition
Protons (H+) never exist on their own, they typically bond with another water molecule creating this positively charged ion
Term
Buffers
Definition
Accept/Release protons as necessary to keep pH constant
Term
pH Scale
Definition
  • The amount of H+ in a solution
  • 10 fold change between each number (ex. 3 is 10x more acidic than 4)
  • 0-14 scale
  • Acidic: 0-6
  • Neutral: 7
  • Basic: 8-14

 

Term
Carbon
Definition
  • Main building block for all "organic" molecules
  • Has 4 electrons in its outer shell
  • Typically forms 4 covalent bonds
  • Very stable 
Term
Macromolecules
Definition
  • Many small compounds linked together to form large compounds
  • Polymer made up of many small monomers
Term
What are the 4 main organic molecules that make up living things?
Definition
  • Carbohydrates
  • Lipids
  • Proteins
  • Nucleic Acids 
Term
Carbohydrates
Definition
Made up of sugars, monomers (glucose, fructose, galactose, other monosaccharides)
Term
Carbohydrate Polymers
Definition
Hundreds to thousands of sugar monomers hooked together
Term
What are the 3 main biological carbohydrate polymers?
Definition

All made of glucose

  • Starch
  • Cellulose
  • Glycogen 
Term
Starch
Definition

"Food storage" molecule that can be broken down for energy

A biological carbohydrate polymer

Term
Cellulose
Definition
  • Polymer that is used as a structural component of cell walls (what wood is made of)
  • Very tough b/c way it's glucose monomers are linked allows for bonding between various cellulose polymer strands
Term
Glycogen
Definition

Stored energy source (in human liver and muscles)

Its glucose chain is branched

Term
Lipids
Definition
  • Fats
  • Oligomers (few): unlike polymers (many) they are limited in size
  • Hydrophobic: insoluble in water
Term
3 Forms of Lipids
Definition
  • Fatty acids
  • Triglycerides
  • Phospholipids  
Term
Fatty Acids
Definition
  • Form of Lipids
  • Long chains of C-H
  • Can be saturated or unsaturated 
Term
Saturated Fats
Definition
  • Normally found in animals and a few plants
  • Solid at room temperature
  • Fatty acids 
Term
Unsaturated Fats
Definition
  • Normally found in plants
  • liquid at room temperature
  • Fatty acids 
Term
Triglycerides
Definition
  • Form of Lipids
  • One glycerol and 3 fatty acid tails
Term
Phospholipids
Definition
  • 1 glycerol + 2 fatty acids + phosphate
  • Make up cell membranes
  • Hydrophobic bottom (fatty acid tails)
  • Hydrophyllic top (phospholipid head) 
Term
Proteins
Definition
Polymers constructed of monomers called amino acids
Term
What dictates the chemical properties of the amino acid?
Definition
The structure of the side chain (R group)
Term
How many different amino acids with different side chains are there?
Definition
20
Term
Amino Acids
Definition
  • Amino group + carboxyl group
  • assembled by dehydration into larger peptides
  • Mixture of these determines the shape of the protein 
Term
Protein Structures
Definition
  • Formed by specific amino acid bonds
  • Determines the proteins function
  • Small alteration in structure- alteration in function 
Term
Denaturation
Definition
  • A change in the shape of a protein, usually causing loss of function
  • Caused by changes in protein's environment (pH, temperature, salt concentration)
Term
7 Types of Proteins
Definition
  • Enzymes, Antibodies, Structural proteins, Storage proteins, Contractile proteins, Transport proteins, Hormones (Receptors) 
Term
Enzymes
Definition
Accelerate chemical reactions
Term
Antibodies
Definition
Proteins that defend against pathogens
Term
Structural Proteins
Definition
Support
Term
Storage Proteins
Definition
Amino acid and energy storage
Term
Contractile Proteins
Definition
Movement
Term
Transport Proteins
Definition
Transport of other compounds
Term
Hormones, Receptors
Definition
Proteins that help in cell signaling
Term
Nucleic Acids
Definition

Polymers of nucleotides (DNA and RNA)

DNA: Deoxyribose

RNA: Ribose

Term
Nucleotides in DNA & RNA
Definition
  • Adenine (A)
  • Guanine (G)
  • Thymine (T) - in DNA only
  • Cytosine (C)
  • Uracil (U) - in RNA only 
Term
Pyrimidines
Definition

Type of nitrogen base

-Cytosine

-Thymine

-Uracil

Can only bind with purines

Term
Purine
Definition

Type of nitrogen base

-Adenine

-Guanine

Can only bind with a pyrimidine

Term
Which nucleotides bind together?
Definition
  • A-T (U) (Purine-Pyrimidine)
  • G-C (Purine-Pyrimidine)
Term
What makes DNA translatable?
Definition

One base (nucleotide) translates to another (in RNA) which translates to a specific amino acid

Transcription to Translation

Term
Genes
Definition

Its what DNA's double helix of complimentary strand is packaged into

Each one corresponds to a specific protein

Term
What does it mean when a gene is "turned on"?
Definition
  • It's being translated into proteins that are carrying out work in the cell
  • Purpose: each cell has the same DNA, it determinds which cell will be a skin cell or a muscle cell 
Term
Polymer Assembly
Definition

Assembly & breakdown of polymers is done by 2 chemical reactions that involve the addition or subtraction of water

  • Dehydration: assembly of polymers
  • Hydrolysis: breakdown of polymers
Term
Discovery of Cells
Definition
Robert Hooke in 1665 looking at oak bark
Term
Creators of Cell Theory
Definition
Matthias Schleiden (1838) and Theodor Schwann (1839)
Term
Cell Theory
Definition
  • All organisms are composed of cells
  • Cells are the smallest living things
  • Cells arise only from pre-existing cells 
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