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BIOL 111 Chapter 18
Regulation of Gene expression
61
Biology
Undergraduate 1
11/12/2009

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Term
operator
Definition
a segment of dna that acts as a regulatory switch for a cluster of functionally related genes usually positioned within the promoter
Term
contents of the operon
Definition
entire stretch of dna that includes teh operator, the promoter and the genes that they control
Term
repressor
Definition
switches off operon and prevents gene transctritption by binding to the operator and blocking rna polymerase
Term
regulatory gene
Definition
a gene that codes for a protein, such as a repressor, that controls the transcription of another gene or goupr of genes
Term
corepressor
Definition
molecule that cooperates with a repressor protein to switch an operon off
Term
give an example fo a repressible operon, an operon that is usually on
Definition
trp
Term
inducible operons. give an example
Definition
an operon that is usually off. lac
Term
inducer
Definition
molecule that inactivates the repressor
Term
activator
Definition
protein that binds to dna and stimulates gene transctiption. in prokayotes activators bind in or near the promoter; in eukaryotes, activators bind to control elements in enhancers
Term
cyclic amp
Definition
a regulator in some bacterial operons.  when glucose is scarce, CAP is activated by binding with cAMP
Term
differential gene expression
Definition
the expression of different genes by cells with the same geonome
Term
operon
Definition
the entire stretch of dna that includes teh operator, the promoter and the genes that they control
Term
in __ __, acetyl groups are attached to positively charged lysines in histone tales
Definition
histone acetylation
Term
this process loosens crhomaitn structure, thereby promoting the initiation of transcription
Definition
histone acetylation
Term
the addition of __ groups (__lation) can condense chromatin; the addition of __ groups (__lation) next to a methylated amino acid can loosen chromatin
Definition
methyl groups. methylation; phosphate groups, phosphorylation
Term
in __ __ methylation regulates expression of either the maternal or parental alleles of certain genes at the start of development
Definition
genomic imprinting
Term
epigeneitc ineritance
Definition
the inheritance of traits transmitted by mechanisms not directly involving the nucleotide sequence
Term
control segments
Definition
segments of noncoding dna that help regulate transcription by binding certain proteins
Term
where are proximal control elements located?
Definition
close to the promoter
Term
where are distal control elements located?
Definition
distal control elements or enhancers may be far away from a gene or even located in an intron
Term

what are activators and what do they do?

 

Definition
they are a protein that binds to an enhancer and stimulates transcription of a gene and can cause mediator proteins to interact with proteins at the promoter
Term
alternative rna splicing
Definition
different mrna molecules are produced from the same primary transcript, depending on which rna segments are treated as exons and which as introns
Term
proteasomes
Definition
giant protein complexes that bind protein molecules and degrade them
Term
MicroRNAs (miRNAs)
Definition
small single stranded RNA molecules that bind to m RNA.  these degrade mRNA or block its translation
Term
RNA interference (RNAi)
Definition
the phenomenon of inhibition of gene expression by RNA moleucles
Term
RNA interference is caused by __ __ __ (__)
Definition
small interfereing RNAs (siRNAs)
Term
how are siRNAs and miRNAs different?
Definition
they form from different RNA precursors
Term
how are cell types organized in embryonic development
Definition
cell types are organized into tissues, organs, organ systems, and teh whole organism
Term
the transformation from zygote to adult results from __ __, __ __, and __
Definition
cell division, cells differentiation, and morphogenesis
Term
cell differentiation
Definition
the process by which cells become specialized in structure and function
Term
the physical processes that give an organism its shape constitute __
Definition
morphogenesis
Term
cytoplasmic determinants
Definition
maternal substances in the egg that influence early development
Term
induction
Definition
a process in which signal molecules from embryonic cells cause transcriptional changes in nearby target cells
Term
__ commits a cell to its final fate
Definition
determination
Term
pattern formation
Definition
development of a spatial organization of tissues and organs
Term
positional information
Definition
the molecular cues that contrl pattern formation, ells a cell its location relative to teh body axes and to neighboring cells
Term
embryonic lethals
Definition
embryos with lethal mutations
Term
maternal effect genes
Definition
genes that encode for cytoplasmic determinants that initially establish the axes of the body of drosophila
Term
egg polarity genes
Definition
genes that control orientation of the egg and consequently the fly
Term
different axes of the body
Definition
dosal, ventral; left right; anterior posterior; distal proximal
Term
bicoid
Definition
gene that affects the front half of the body
Term
morphogens
Definition
substances in the gradient hypothesis that establish an embryos axes and other features
Term
why is bicoid research important?
Definition
  1. it identified a specific protein required for some early steps in pattern formation
  2. it increased understanding of the moths role in embryo development
  3. it demonstrated a key developmental principle that a gradient of molecules can determine polarity and position in the embryo
Term
oncogenes
Definition
cancer causing genes
Term
proto oncogenes
Definition
corresponding normal cellular genes that are responsible for normal cell growth and division
Term
proto oncogenes can be converted to oncogenes by:
Definition
  1. movement of dna within the genome: if it ends up near an active promoter, transcription may increase
  2. aplification of a proto oncogene: increases the number of copies of the gene
  3. point mutations in proto oncogenes or its control elements: causes an increase in gene expression
Term
tumor suppressor genes
Definition
genes that help prevent uncontrolled cell growth
Term
what do tumor suppressor proteins do?
Definition
  1. repair damaged dna
  2. control cell adhesion
  3. inhibit the cell cycle in the cell signaling pathway
Term
mutations in the __ __ can lead to production of a hyperactive __ protein and increased cell division
Definition
ras gene; ras
Term
mutations in the __ __ prevent suppression of the cell cycle
Definition
p53 gene
Term
mutations in the __ or __ gene are found in at least half of inherited breast cancers
Definition
BRCA1 or BRCA2
Term
explain the adaptive advantage of grouping bacterial genes into an operon
Definition
Term
Explain how DNA methylat ion and histone
acetylat ion affect chromat in st ructure and
the regulat ion of t ranscript ion
Definition
Term
Define cont rol elements and explain how
they influence t ranscript ion
Definition
Term
Describe the roles played by small RNAs
on gene expression
Definition
they degrade of prevent the translation of an mRNA with a complementary sequnces.  in some cases they can also block transcription by promoting chromitin modification
Term
Explain why determinat ion precedes
differentiation
Definition
Term
Explain how maternal effect genes affect
polarity and development in Drosophila
embryos
Definition
when a mother has a mutation in a maternal effect gene, (mutant in mother gene results in mutant in offspring regardless of offspring's own genotype) she makes defective eggs that when fertilzed develop improperly.  maternal genes control the orientation or polarity of the the egg.
Term
Explain how mutations in tumor suppressor
genes can contribute to
cancer
Definition
since the proteins the they encode help prevent uncontrolled growth, any mutation that decreases the normal activity of tumor suppressor protein may contribute to the onset of cancer.  stimulation of growth through the absence of suppression
Term
Describe the effects of mutations to the
p53 and ras genes
Definition
mutations in the ras gene can lead to excessive cell growth.  the protein p53 encodes for teh synthesis of cell cycle inhibition proteins.  when p53 is knocked out cells divide too much .
Term

inducible enzymes usually function in __ pathways

repressible enzymes usually funcing in __ pathways

Definition
catabolic, anabolic
Term
seven steps to remember
Definition
transcription, translation, rna/proteinprocessing transpot to cytoplasm / cellular destination, chromatin modification
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