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Biocore Objectives
Biocore Lecture Objective Terms
174
Biology
Undergraduate 2
05/11/2011

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Term
Mating factor
Definition
a cells produce ‘a-factor’, a mating pheromone which signals the presence of an a cell to neighbouring α cells. a cells respond to α-factor, the α cell mating pheromone, by growing a projection (known as a shmoo, due to its distinctive shape) towards the source of α-factor. Similarly, α cells produce α-factor, and respond to a-factor by growing a projection towards the source of the pheromone. The response of haploid cells only to the mating pheromones of the opposite mating type allows mating between a and α cells, but not between cells of the same mating type.
Term
Local vs. long-range mediators
Definition
local mediators are signal molecules that are meant for nearby cells, long range mediators are examples of endocrine signaling.
Term
Endocrine, paracrine, juxtacrine signaling
Definition
endocrine signaling is the endocrine system (into the blood stream)
paracrine is nearby or local signaling
juxtacrine requires the cells to be in contact to signal
Term
Ligand
Definition
signal triggering molecule that binds to a target site on generally a receptor protein
Term
Receptor
Definition
a molecule found on the surface of a cell that accepts signaling molecules for specific functions
Term
Signal transduction
Definition
the process by which an extracellular signaling molecule activates a membrane receptor that in turn alters intracellular molecules creating a response
Term
Second messenger
Definition
A secondary messenger comes after a primary messenger hahaha, (calcium is a good example of this after the PLC -> IP3 -> ER calcium release
Term
Carcinomas, sarcomas, lymphomas, leukemias
Definition
Cancers... you should know these if not look em up on wikipedia..
Term
tumor
Definition
its a tumor, a cancerous mass either benign or malignant
Term
Benign, malignant
Definition
hmm think about it, it either stays where it is, or it invades YOUR BODY omg..
Term
Anchorage-independent growth
Definition
A term used to characterize cells that do not require a solid substratum for growth, i.e., the solid glass or plastic surface of a culture dish or micro-carrier beads. Such cells can be grown in suspension or soft media in which they float freely.
Term
Density-dependent inhibition of growth
Definition
Cells that run out of nutrition and space and therefore their growth is inhibited think G1 -> S Restriction Point and G2 -> M Checkpoint for growth
Term
Metastasis
Definition
meta -> next
stasis -> placement

displacement, spread of the disease
Term
Growth Factor
Definition
Growth factors typically act as signaling molecules between cells. Examples are cytokines and hormones that bind to specific receptors on the surface of their target cells.
They often promote cell differentiation and maturation, which varies between growth factors. For example, bone morphogenic proteins stimulate bone cell differentiation, while fibroblast growth factors and vascular endothelial growth factors stimulate blood vessel differentiation (angiogenesis).
Term
Angiogenesis
Definition
Angiogenesis is the physiological process involving the growth of new blood vessels from pre-existing vessels.

Watch the movie, its cool.
Term
Zipcode binding proteins
Definition
mRNA traffickers
Term
Nuclear pore complex
Definition
The nuclear pore complex (NPC), perhaps the largest protein complex in the cell, is responsible for the protected exchange of components between the nucleus and cytoplasm and for preventing the transport of material not destined to cross the nuclear envelope.

http://www.ks.uiuc.edu/Research/npc/
Term
Nuclear localization signal (NLS)
Definition
A nuclear localization signal or sequence (NLS) is an amino acid sequence which acts like a 'tag' on the exposed surface of a protein. This sequence is used to target the protein to the cell nucleus through the Nuclear Pore Complex and to direct a newly synthesized protein into the nucleus via its recognition by cytosolic nuclear transport receptors. Typically, this signal consists of one or more short sequences of positively charged lysines or arginines. Different nuclear localized proteins may share the same NLS. An NLS has the opposite function of a nuclear export signal, which targets proteins out of the nucleus.
Term
Nuclear export signal (NES)
Definition
A nuclear localization signal or sequence (NLS) is an amino acid sequence which acts like a 'tag' on the exposed surface of a protein. This sequence is used to target the protein to the cell nucleus through the Nuclear Pore Complex and to direct a newly synthesized protein into the nucleus via its recognition by cytosolic nuclear transport receptors. Typically, this signal consists of one or more short sequences of positively charged lysines or arginines. Different nuclear localized proteins may share the same NLS. An NLS has the opposite function of a nuclear export signal, which targets proteins out of the nucleus.
Term
NF-AT
Definition
Nuclear factor of activated T-cells
-> binds to calcineurin in high Ca2+
-> activates immune system
Term
Ran
Definition
Ran is a GTP binding protein that is essential for the translocation of RNA and proteins through the nuclear pore complex. The Ran protein is also involved in control of DNA synthesis and cell cycle progression. Nuclear localization of Ran requires the presence of regulator of chromosome condensation 1 (RCC1). Mutations in Ran disrupt DNA synthesis. Because of its many functions, it is likely that Ran interacts with several other proteins.[4]
Term
Signal sequence
Definition
Protein targeting or protein sorting is the mechanism by which a cell transports proteins to the appropriate positions in the cell or outside of it. signal peptide is a short (3-60 amino acids long) peptide chain that directs the transport of a protein. Signal peptides may also be called targeting signals, signal sequences, transit peptides, or localization signals.
Term
Signal recognition particle (SRP)
Definition
SRP binds to the ER signal sequence and blocks translation then bins to the SRP receptor docking the ribosome on the ER membrane
-> GTP binds to SRP and SRP receptor ports is opened -> polypeptide inserted
Term
Cotranslational, posttranslational import
Definition
The N-terminal signal sequence of the protein is recognized by a signal recognition particle (SRP) while the protein is still being synthesized on the ribosome. The synthesis pauses while the ribosome-protein complex is transferred to a SRP receptor on the endoplasmic reticulum (ER), a membrane-enclosed organelle. There, the nascent protein is inserted into the Sec61 translocation complex (also known as the translocon) that passes through the ER membrane. The signal sequence is immediately cleaved from the polypeptide once it has been translocated into the ER by signal peptidase in secretory proteins.

Even though most proteins are cotranslationally translocated, some are translated in the cytosol and later transported to their destination. This occurs for proteins that go to a mitochondrion, a chloroplast, or a peroxisome (proteins that go to the latter have their signal sequence at the C terminus). Also, proteins targeted for the nucleus are translocated post-translation. They pass through the nuclear envelope via nuclear pores.
Term
Translocon
Definition
The translocon (commonly known as a translocator or translocation channel) is the complex of proteins associated with the translocation of nascent polypeptides across membranes. In eukaryotes the polypeptides are transported into the interior (cisternal or luminal) space of the endoplasmic reticulum (ER) from the cytosol. This process requires the protein to cross a hydrophobic lipid bilayer.
Term
Signal peptidase
Definition
Protein cleaved after it has been translocated into the ER lumen.
Term
Chaperones, BiP, protein disulfide isomerase
Definition
Term
Stop transfer sequence
Definition
Term
Internal start transfer sequence
Definition
Term
GPI (glycophospatidylinositol) anchor
Definition
Term
N-linked glycosylation
Definition
Glycosylation is the enzymatic process that attaches glycans to proteins, lipids, or other organic molecules. This enzymatic process produces one of the fundamental biopolymers found in cells (along with DNA, RNA, and proteins). Glycosylation is a form of co-translational and post-translational modification. Glycans serve a variety of structural and functional roles in membrane and secreted proteins.[1] The majority of proteins synthesized in the rough ER undergo glycosylation. It is an enzyme-directed site-specific process, as opposed to the non-enzymatic chemical reaction of glycation.
Term
Dolichol phosphate
Definition
Dolichols play a role the co-translational modification of proteins known as N-glycosylation in the form of dolichol phosphate. Dolichols function as a membrane anchor for the formation of the oligosaccharide Glc3-Man9-GlcNAc2 (where Glc is glucose, Man is mannose, and GlcNAc is N-acetylglucosamine).
Term
Endoplasmic reticulum
Definition
Term
Golgi apparatus, trans-Golgi network
Definition
Term
Sec mutant
Definition
Term
Coat protein
Definition
Term
Early and late endosomes
Definition
Term
Regulated vs. constitutive secretion
Definition
Term
Endocytosis, exocytosis
Definition
Term
Receptor-mediated endocytosis
Definition
Term
SNARE hypothesis
Definition
Term
Clathrin, dynamin
Definition
Term
Lysosome
Definition
Term
Heterotrimeric G protein
Definition
Term
cyclic AMP (cAMP)
Definition
Term
adenylyl cyclase
Definition
Term
phosphodiesterase
Definition
Term
protein kinase A (PKA)
Definition
Term
G protein-linked receptor kinase (GRK)
Definition
Term
regulator of G protein signaling (RGS)
Definition
Term
pertussis and cholera toxins
Definition
Term
CREB
Definition
Term
phospholipase C
Definition
Term
phosphatidylinostiol-4,5-bisphosphate (PIP2)
Definition
Term
diacylglycerol
Definition
Term
protein kinase C
Definition
Term
forskolin, phorbol ester
Definition
Term
inositol 1.4.5 trisphosphate (IP3)
Definition
Term
IP3 receptor
Definition
Term
Calcium waves (intra- and inter-cellular)
Definition
Term
Calcium ionophore
Definition
Term
Calcium indicator
Definition
Term
Calcium-induced calcium release
Definition
Term
Calmodulin
Definition
Term
Nitric oxide
Definition
Term
cGMP/Protein Kinase G
Definition
Term
b-Adrenergic receptor
Definition
Term
epinephrine
Definition
Term
agonist (ventolin)
Definition
Term
antagonist (propranolol)
Definition
Term
Scaffolding complexes
Definition
Term
growth factors
Definition
Term
receptor tyrosine kinases (RTKs)
Definition
Term
epidermal growth factor receptor (EGFR)
Definition
Term
Ras / MAPK signaling pathway
Definition
Term
Monomeric G protein (GTPase)
Definition
Term
Myc, Fos, Jun
Definition
Term
GTPase activating protein (GAP)
Definition
Term
GTPase exchange factor (GEF)
Definition
Term
Phospholipase C gamma
Definition
Term
PI3K – AKT signaling
Definition
Term
fibroblast growth factor receptor (FGFR)
Definition
Term
constitutively active mutation
Definition
Term
dominant negative mutation
Definition
Term
Achondroplasia
Definition
Term
steroid hormone
Definition
Term
hormone response element
Definition
Term
inverted repeats
Definition
Term
Microtubule
Definition
Term
Microfilament
Definition
Term
Intermediate filament
Definition
Term
Tubulin
Definition
Term
Actin
Definition
Term
“Plus” and “minus” ends of a microtubule
Definition
Term
"Barbed" and "pointed" ends of an actin filament
Definition
Term
Drugs - nocodazole, taxol, cytochalasin, phalloidin
Definition
Term
Microtubule dynamic instability
Definition
Term
Actin treadmilling
Definition
Term
Centrosome
Definition
Term
Gamma tubulin ring complex (γTuRC)
Definition
Term
Arp2/3-mediated branching
Definition
Term
Retrograde flow of actin
Definition
Term
Motor Proteins – Kinesin, Dynein, Myosin
Definition
Term
Flagella
Definition
Term
Cilia
Definition
Term
Axoneme
Definition
Term
Basal Body
Definition
Term
Sliding Microtubule Model for Cilia
Definition
Term
Myofibril
Definition
Term
Sarcomere
Definition
Term
Thick and thin filaments
Definition
Term
Troponin
Definition
Term
Tropomyosin
Definition
Term
Sarcoplasmic reticulum
Definition
Term
T tubule
Definition
Term
Triad (T-tubule)
Definition
Term
Rigor
Definition
Term
Extracellular matrix
Definition
Term
Proteoglycan
Definition
Term
Collagen
Definition
Term
Fibronectin
Definition
Term
Laminin
Definition
Term
Integrin
Definition
Term
Focal contact/focal adhesion
Definition
Term
Desmosome
Definition
Term
Hemidesmosome
Definition
Term
Tight junction
Definition
Term
Adherens junction
Definition
Term
Gap junctions
Definition
Term
Cadherin
Definition
Term
Catenin
Definition
Term
Plakin
Definition
Term
Cell cycle
Definition
Term
Cell cycle checkpoint
Definition
Term
Heterokaryon
Definition
Term
MPF
Definition
Term
Cyclin
Definition
Term
Cyclin dependent kinase (Cdk)
Definition
Term
Retinoblastoma protein (Rb), E2F
Definition
Term
Anaphase promoting complex (APC), separase, securin, cohesin
Definition
Term
Cdc20
Definition
Term
Mad and Bub proteins
Definition
Term
ATM, Mdm2, p53, p21, Puma
Definition
Term
Replicons
Definition
Term
Licensing
Definition
Term
Mitosis
Definition
Term
Kinetochore
Definition
Term
Astral and spindle microtubules
Definition
Term
Cytokinesis
Definition
Term
Contractile ring
Definition
Term
Cleavage
Definition
Term
Apoptosis
Definition
Term
Trophic (survival) factors
Definition
Term
Anchorage-dependent growth
Definition
Term
Procaspase/caspase
Definition
Term
Initiator caspase
Definition
Term
Executioner caspase
Definition
Term
DNA "laddering"
Definition
Term
Apoptosome
Definition
Term
Bcl-2
Definition
Term
Proapoptotic proteins
Definition
Term
Cytochrome C
Definition
Term
p53
Definition
Term
Proto-oncogene/oncogene
Definition
Term
Tumor suppressor
Definition
Term
Anchorage-independent growth
Definition
Term
Loss of heterozygosity
Definition
Term
p53
Definition
Term
Rb
Definition
Term
Human papillomavirus
Definition
Term
Herceptin, tamoxifen, Gleevec, taxol
Definition
Term
"Humanized" antibodies
Definition
Term
DNA microarrays
Definition
Term
Angiogenesis
Definition
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