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Biochemistry Old Exams I
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77
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Not Applicable
02/01/2004

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Term
Nutrasweet made up of two aa which are...
Definition
Asp, Phe
Term
What causes the formtn of aldol cross-links in collagen
Definition
Cu
Term
AA substtn leading to osteogenesis imperfecta
Definition
Arg subst for Gly
Term
Hydroxylysine formtn requires
Definition
Vitamin C
Term
IgE most likely found on...
Definition
mast cells
Term
Alpha helix stabilized by
Definition
H-bonds
Term
Mb AND Hb both have
Definition
Fe
Term
BPG fxns by
Definition
stabilizing deoxy (T) form of Hb
Term
The hydroxylation of proline residues in collagen
Definition
is a post-translaitonal modification
Term
17. The blood plasma protein that specifically binds
Fe+3 is
Definition
transferrin
Term
A Fab fragment of IgG
Definition
has a heavy chain N-terminus
Term
HbS red blood cells sickle because
Definition
deoxy HbS forms polymers
Term
The amino acid sequence, Gly-Leu-Pro-Gly-
HyLys-Pro-Gly-Val-Pro, would most probably be
found in
Definition
collagen
Term
CO2 binds to Hb and aids in O2 delivery to the
tissues by
Definition
decreasing the pH
Term
The antigen binding sites of immunoglobulins
Definition
form pockets to fit the antigens
Term
The dimeric Ig found in tears
Definition
IgA
Term
The Ig that crosses the placenta to protect the
fetus
Definition
IgG
Term
Amino acid converted to desmosine in elastin
Definition
Lys
Term
Ca+2 initiates striated muscle contraction by
binding to
Definition
TnC
Term
The major protein of thin filaments in striated
muscle is
Definition
actin
Term
NO binds to Hb
Definition
Csyteines
Term
Hemoglobin's binding affinity for O2
Definition
incr w/ incrsng pH
Term
37. Extracellular matrix proteins include all the
following EXCEPT
A. Laminin
B. Transferrin
C. Fibronectin
D. Type IV collagen
E. Vitronectin
Definition
B. Transferrin
Term
The blood plasma protein NOT made in the liver
GC-globulin
Transferrin
Immunoglobulin M
Albumin
Alpha-1 Antitrypsin
Definition
IgM
Term
The thermodynamic driving force for the correct
folding of proteins comes from the
Definition
entropy of water
Term
When striated muscle contracts, a conformational
change in which protein results in the “power stroke”?
Definition
myosin
Term
Carbon monoxide (CO) is a poison because it
Definition
binds to heme of Hb
Term
A methyl group at the no.5 position of which
base distinguishes DNA nucleotides from RNA
nucleotides?
Definition
thymine
Term
Which of the following mutagens is an
intercalating agent?
Definition
ethidium bromide
Term
During DNA repair, which enzyme uses ATP as a
substrate?
Definition
DNA Ligase
Term
The C-terminal domain of RNA polymerase II is
activiated by
Definition
phosphorylation
Term
An RNA species found only in eukaryotic
ribosomes is
Definition
5.8 S RNA
Term
Eukaryotic promoters are recognized directly by
Definition
basal TFs and enhancer binding proteins
Term
A novel chemical linkage in eukaryotic mRNA
caps is
Definition
5'-5' phosphodiester bond
Term
51. Which antimicrobial agent binds to the 30S
ribosomal subunit to inhibit protein synthesis?
Definition
tetracycline
Term
Polyadenosine tails in eukaryotic mRNA are
Definition
important in cytoplasmic mRNA stability
Term
Transposable genetic elements can...
Definition
interrupt genes,
promote their own mobility,
stimulate gene sequence rearrangements,
function through an RNA intermediate.
Term
Magnesium associates with ATP in cells to
Definition
neturalize two negative charges on phosphate groups
Term
55. Synthesis of the dipeptide LEU-TYR requires 20
kcal/ mole of energy. What is the ÄG associated with
the hydrolysis of LEU-TYR at 37° C if ÄS = 10 cal/
mole/ degree? (OEC = 273EK)
Definition
- 16.9 kCal/mol
Term
56. If a Ä pH of 2 exists across a biological
membrane, how much free energy could be gained by
the dissipation of the proton gradient at 37° C? (R = 2
cal/ mol/ degree)
Definition
- 2.8 kcal/mol
Term
Vitamins are important because they
Definition
provide cofactors not otherwise available for important enzyme catalyzed reactions
Term
The catalytic mechanism of chymotrypsin
includes
Definition
an unusually reactive serine residue which undergoes transient acylation during catalysis
Term
Chymytrypsin is formed from chymotrypsinogen by...
Definition
controlled proteolysis
Term
Serine protease that cleaves prothrombin.
Definition
Factor Xa
Term
Catalyzes formation of the gamma-glutamylepsilon-
lysine bond.
Definition
Factor XIIIa (transaminidase)
Term
Which of the following increases the rate of
blood coagulation?
Definition
Ca ions
Term
There are many different proteinases in nature,
one feature that they all have in common, however, is
that each
Definition
cleaves an amide bond giving rise to a carboxyl
group and an amino group.
Term
What is responsible for phosphorylation of tau?
Definition
a protein kinase
Term
Excessive phosphorylation of a protein could
result from
Definition
too little phosphatase activity
Term
Regulation of enzyme activity by allosteric
effectors generally involves
Definition
changes in enzyme conformation summarized as T - R transitions.
Term
Non-competitive inhibition of an enzyme results in
Definition
decreased apparent Vmax
Term
Antithrombin III may be described generally as a
Definition
serpin
Term
A likely agent in the later treatment of the patient
is coumidin or warfarin. Vitamin K-associated
modification of a protein results in an increased ability
Definition
to bind, by way of Ca 2+ bridges, to phospholipid membranes
Term
Modifier proteins affect the activities of specific
enzymes. An example of a modifier protein is
Definition
Va of the clotting cascade
Term
Lead ingestion would cause decreased
hemoglobin because
Definition
lead inhibits two enzymes of the heme biosynthetic pathway
Term
Where in the cell are the enzymes constituting the
heme biosynthetic pathway located?
Definition
in mitochondria and cytosol
Term
Heme biosynthesis is regulated at the level of
Definition
delta-amino levulinic acid (ALA) synthase
Term
Heme oxygenase reaction
Definition
produces CO
Term
Bilirubin is normally transported through the
aqueous circulation
Definition
complexed with serum albumin
Term
When compared to the immunoglobulin light (L)
chain genes, an additional degree of diversity in
heavy (H) chain genes is achieved due to:
Definition
presence of D-region exons
Term
Retroviral genome:
Definition
Integrase
Term
To measure complexity of a genome:
Definition
Cot Curve
Term
A sequence unique to human genome
Definition
Alu elements
Term
E.coli bacteria use the restriction enzyme, EcoRI,
to defend against a bacteriophage infection. The
bacterial DNA is immune to EcoRI cleavage due
to:
Definition
methylation
Term
Identification of the promoter elements of a gene
requires:
Definition
genomic DNA library
Term
Site-directed mutagenesis using an
oligonucleotide can be employed to produce:
Definition
point mutn, insertion, deletion
Term
A vector to clone large size (1 mb) fragments of
DNA:
Definition
YAC
Term
A gel method to detect RNA:
Definition
Northern Blot
Term
A method to detect specific DNA sequences
on chromosomes:
Definition
FISH
Term
DNA-protein interactions may be studied by:
Definition
gel mobility shift assays
Term
(SSCP) analysis can be used to detect:
Definition
point mutns
Term
DNA fingerprinting:
Definition
VNTR
Term
DNA footprinting
Definition
DNase I Cleaveage
Term
Humoral immunity:
Definition
B Lymphocytes
Term
Cellular Immunity
Definition
Major Histocompatibility Complex (MHC)
Term
Ubiquitin is a small protein used to
Definition
mark proteins for degradation
Term
The interaction of transcription factors with
DNA sequences is usually by interactions (major or minor groove?)
Definition
in the major groove
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