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biochem
Exam 2 TF info
54
Aerospace Engineering
Kindergarten
08/02/2011

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Cards

Term
snRNA
Definition
splicesome constituent
Term
primer
Definition
dna chain starter
Term
mRNA
Definition
primary transcript contituent, contains exons, complement of dna template strand
Term
tRNA
Definition
anticodon
Term
metalloproteinases
Definition
periodontitis
Term
glycated proteins
Definition
diabetes mellitus
Term
ricin
Definition
impaired protein synthesis
Term
condroitin sulfatase
Definition
arthritis
Term
hydrolysis of PPI to 2 pi
Definition
change of G becomes more negative
Term
catabolism
Definition
atp produced
Term
change of G <0
Definition
reaction goes to teh right
Term
K>1
Definition
Change of G< 0
Term
atp hyrdolysis
Definition
change of G<0
Term
oxidation
Definition
NADH--> NAD + H+
Term
Mitochondrial phosphorylaion
Definition
uncoupling from oxidation=
-results in heat produciton
produced by transmembrane H+ carriers
ATP synthesis rate decreased
Term
Precipitation of mucins
Definition
on surface: factors leading up to:
-action of bacterial enzyme
-decrease in total charge on the protein
-enzymatic removal of negatively charged sialate side chains
-decreasing affinity for water
Term
Hyaluronate
Definition
>1000 monosaccharide units
polyanion
hydrophillic
contains amino sugars
Term
blood group antigens
Definition
type a has antibodies to type b antigen
oligosaccaride linked to portein or lipid
cell surface location
binding site for fibronectin
Term
Sequence of Protein binding
Definition
Inside cell to extracellular matrix=
actin-->integrin-->fibronectin
Term
pH=pka +1
Definition
A-=HA(10)
Term
polar charged AA
Definition
KHR ED
Term
polar uncharged AA
Definition
STNQ
Term
coenzyme
Definition
nonpeptide component
Term
zinc finger
Definition
contains DNA binding recognition helix
Term
globin fold
Definition
helices linked by loops
Term
Fe III
Definition
methemoglobin
Term
apomyglobin
Definition
moslty alpha helices
Term
distal histidine
Definition
H-bonded to bound O2
Term
electron transfer
Definition
oxidation
Term
DNA double helix stability
Definition
1. base stacking
2. interstrand hydrogen bonds
3. hydrophobic interactions
4. cooperativity
Term
primase
Definition
catalyzes Ntp--> ppis
Term
allosteric regulatory site
Definition
where trna anticodon binds an aminoacyl-tRNA synthetase
Term
EFG
Definition
moves ribosome along mrna
Term
rf1
Definition
binds stop codon to trigger termination of protein synthesis
Term
IF2
Definition
hydrolyzes gtp when codon matches anticodon
Term
IF1
Definition
binds ribosome 30S subunit
Term
EF-tu (GTP)
Definition
ensure correct aa-trna binding to A-site
Term
CAP protein action
Definition
-increasd cAMP
-DNA major groove binding
-enhanced rna polymerase binding to dna
-increased expression of selected genes
Term
PCR cycle
Definition
heat to separate strands of dsDNA
Term
double stranded cDNA
Definition
What you need to clone cDNA from cell:
-polymerase chain rxn (PCR)
=reverse transcriptaste
-dna polmerase
phage infection

sequence of production:
1. isolation of mRNA
2. reverse transcriptase synthesis of DNA
3. Dna polymerase synthesis of DNA
Term
chymotrypsin binding
Definition
to substarte you need non polar and h bonding NCIs
Term
oxyanion hole
Definition
positive charge
Term
catalytic triad of chymotrypsin
Definition
contains one or more side chain H bond donors and side chain H bond acceptors
Term
peptide unit in aq soln
Definition
1 H bond donor and 2 H bond acceptors total of 3 h bonds
Term
heme
Definition
ferrous iron
mostly planar
has 2 anionic functional groups
binding to protein includes coordinate covalent bond
Term
cooperative binding of O2 to Hb
Definition
characteristics:
1. changes in quaternary structure
2. conversion of Hbt to Hbr
3. degree of cooperativity>2
4. S shaped O2 binding
Term
rrna
Definition
involved with protein synthesis
Term
amino acyl tRNA synthetase
Definition
amino acids, anticodons, and CCA end of tRNA
Term
cAMP increase
Definition
CAP protein binds DNA and RNA polymerase
Term
Virus
Definition
Ribosome least like to be part of virus
Term
okazaki fragment
Definition
lagging strand template
Term
rna polymerase
Definition
reads dna template strand in 3'-5' direction
Term
EF-tu (gtp) amino acyl tRNA
Definition
binds ribosome A site
Term
catalytic mechanism chymotrypsin/ CPA
Definition
both have transition state stabilization of negative charge on an oxygen atom
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