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Biochem Exam 3 - Lipids
Lipids
182
Biochemistry
Graduate
10/27/2014

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Term
These are the three types of isoprenoids.
Definition
What are Steroids, Lipid Vitamins, and Terpenes?
Term
Steroids, Lipid Vitamins, and Terpenes are all classified as this type of fatty acid.
Definition
What are Isoprenoids?
Term
These are the five types of fatty acids?
Definition
What are Eicosanoids, Glycerophospholipids*, Triacylglycerols, Waxes, and Sphingolipids?
Term
Eicosanoids, Glycerophospholipids*, Triacylglycerols, Waxes, and Sphingolipids are all classified as this type of lipid.
Definition
What are fatty acids?
Term
These are the five types of phosphatidates.
Definition
What are PhosphatidylETHANOLAMINES, PhosphatidylSERINES, PhosphatidylCHOLINES, PhosphatidylINOSITOLS, and Other phospholipids?
Term
These are the two types of Glycerophospholipids.
Definition
What are Plasmalogens and Phosphatidates?
Term
Plasmalogens and Phosphatidates* are both classified as this type of lipid.
Definition
What is a Glycerophospholipid?
Term
PhosphatidylETHANOLAMINES, PhosphatidylSERINES, PhosphatidylCHOLINES, PhosphatidylINOSITOLS, and
Other phospholipids are all classified as this type of lipid
Definition
What are Phosphatidates?
Term
Ceramides* are classified as this type of lipid.
Definition
What are Shingolipids?
Term
This is the subcategory of Shingolipids
Definition
What are Ceramides?
Term
These are the four types of ceramides.
Definition
What are Sphingomyelins (also a phospholipid), Cerebrosides, Gangliosides, and Other glycosphingolipids?
Term
Sphingomyelins, Cerebrosides, Gangliosides, and Other glycosphingolipids can all be classified as this
Definition
What are Ceramides*?
Term
Which of the following classes of lipids does NOT involve fatty acids?

Sphingolipids
Steroids
Wax Esters
Phosphatidates
Definition
Steroids
Term
These are the two general types of lipids
Definition
What are Open chain (polar head) and
Fused ring (steroid ring skeleton)?
Term
This is the type of linkage holds open chain fatty acids to whatever they connect to
Definition
What is an Ester linkage?
Term
In an unsaturated fatty acid, this is the type of double bond usually formed, giving it a lower melting point.
Definition
What is a cis bond?
Term
The first double bond in an unsaturated fatty acid is usually on this Carbon
Definition
What is the ninth carbon?
Term
This is the name of the C=C bond in an unsaturated fatty acid when counted from the opposite end of the molecule compared to IUPAC naming.
Definition
What is an Omega bond?
Term
These are two common examples of Omega fatty acids
Definition
What are Omega-3 and Omega-6?
Term
When all three alcohol groups of glycerol form esters with fatty acids, this is formed.
Definition
What is a triaglycerol (triglyceride)?
Term
It is very common to have this type of center in a triacylglygerol.
Definition
What is a chiral center?
Term
These types of triacylgylcerols are rich in saturated acids and are solid at room temperature.
Definition
What are fats (lard)?
Term
These types of triacylgylcerols are rich in unsaturated acids and are liquid at room temperature.
Definition
What are oils?
Term
Fats are used for long term energy storage in animals because it is more efficient than this type of molecule
Definition
What is glycogen?
Term
Complete oxidation of fat yields this much energy
Definition
What is 38.9 kJ/gram?
Term
Fat is typically found here to prevent heat loss.
Definition
What is near the skin?
Term
These fatty acids are secreted onto fur and feathers to make them water repellant.
Definition
What are waxes?
Term
In a biological system, this hydrolyzes fats so they can be oxidized.
Definition
What are lipases?
Term
Before it could be oxidized, Tyler Durden used this process to chemically hydrolyze "The Richest Fat in All the Land"
Definition
What is saponification (base hydrolysis)?
Term
These surface active agents lower water's surface tension
Definition
What are phospholipids?
Term
This type of fatty acid will spontaneously rearrange into ordered structures when placed in water.
Definition
What are phospholipids?
Term
This phospholipid structure is similar to a cell membrane in an aqueous environment.
Definition
What is a phospholipid bilayer vesicle?
Term
This is the result of the third -OH of glycerol being esterified to a phosphoric acid or a phosphoric acid ester, instead of a carboxylic acid.
Definition
What is a phosphoglyceride?
Term
This is the term for a terminal nitrogen that has had all of it's hydrogens replaced with methyl groups. Choline is an example.
Definition
What is exhaustively methylated?
Term
This sphingolipid is very common in the nervous system.
Definition
What is sphingomyelin?
Term
This long chain amino acid alcohol is the base for sphingolipids instead of glycerol.
Definition
What is sphingosine?
Term
These are the two ways by which a student can recognize a triacylglyceride versus a sphingolipid.
Definition
An amine on position 2 instead of the alcohol in sphingosine, and a long chain as part of the alcohol instead of a fatty acid in sphingosine.
Term
This fatty acid has a carbohydrate bound to the alcohol of a lipid via a glycosidic link.
Definition
What is a glycolipid?
Term
These fatty acids are commonly found in the cell membranes of nerve and brain cells.
Definition
What are glycolipids
Term
Glycolipids will not have this type of functional group common in other fatty acids.
Definition
What is a phosphate group?
Term
Glycolipids will have this type of charge, unless they have been sulfated.
Definition
What is a neutral charge.
Term
These fatty acids are synthesized from isopntenyl pyrophosphate.
Definition
What are isoprenoids?
Term
Isoprenoids contain a repeating unit, known as an isoprene, which is made of this many carbons.
Definition
What is five?
Term
This is the base unit of a terpene.
Definition
What is an isoprene?
Term
A tetraterpene contains this number of isoprene units.
Definition
What is eight?
Term
Vitamin E, vitamin K and ubiquinone are all examples of terpenoids, a fatty acid biomolecule with this component.
Definition
What is an isoprenoid?
Term
This biological building block has been prenylated when attached to an isoprenoid, which may play a role in cell growth.
Definition
What is protein?
Term
These isoprenoids are lipid based ring systems formed from isopentenyl pyrophosphate.
Definition
What are steroids?
Term
Placement of the double bonds and of these two functional groups within the ring system are the two factors that determine the differences between steroids.
Definition
What are alkyl & hydroxy groups?
Term
Steroids are based on this molecule, a triterpene of 6 isoprene units.
Definition
What is squalene?
Term
Surround a neutral lipid core of cholesterol esters and/or triacylglycerols with a layer of phospholipid, cholesterol, and you'll have this molecular complex.
Definition
What is a lipoprotein?
Term
This class of large lipoproteins have a very, VERY low density.
Definition
What are Chylomicrons?
Term
This class of lipoproteins are made in the liver and transport lipids to other tissues.
Definition
What are VLDLs? (Very Low Density Lipoproteins)
Term
This class of lipoprotein is used to carry cholesterol to other tissues.
Definition
What are LDL's? (Low Density Lipoproteins)
Term
These Good Guy lipoproteins are made in the liver and scavenge excess cholesterol esters.
Definition
What are HDLs? (High Density Lipoproteins)
Term
85% of chylomicron is composed of this biomolecule. The number drops to 50% in VLDL's.
Definition
What are triacylglycerols?
Term
HDL's are composed of 55% or this biomolecule, over twice as much as it's LDL counterpart.
Definition
What is protein?
Term
At only only 1%, this lipoprotein has the lowest concentration of cholesterol.
Definition
What are chylomicrons?
Term
This medical condition often leads to coronary artery disease, and is indicated by plaque build-up and a high concentration of LDLs in the plasma.
Definition
What is atherosclerosis?
Term
A deposit of smooth muscle cells, macrophages, and cell debris will form this on the blood vessel wall.
Definition
What is a plaque?
Term
A human erythrocyte is 8% carbohydrate because of these important indicators.
Definition
What are antigens?
Term
A high concentration of this will lead to a more rigid lipid membrane.
Definition
What is cholesterol?
Term
A translocating protein aids phospholipids through the cytosol to the cell membrane after they are produced here.
Definition
What is the Endoplasmic Reticulum?
Term
Most membranes require these to carry out functions.
Definition
What are proteins?
Term
This type of protein is embedded in, or will extent all the way through the cell membrane.
Definition
What is an integral protein?
Term
This protein is bound to the cell membrane and interacts with integral proteins.
Definition
What are peripheral proteins?
Term
Glycophorin and anion channel protein are the two major integral proteins of this cell type.
Definition
What are red blood cells
Term
This integral protein is made of 131 amino acids and is about 60% carbohydrate.
Definition
What is glycophorin?
Term
This diffuses through the ion channel in exchange for chloride, maintaining the electrical potential.
Definition
What is HCO3- ?
Term
Separation, transport of molecules and this are all functions of the cell membrane.
Definition
What is binding of hormones and other molecules?
Term
This allows molecules to move through a membrane down a concentration gradient
Definition
What is simple diffusion?
Term
Molecules move more quickly through protein channels regulated by binding or voltage in this type of diffusion.
Definition
What is facilitated diffusion?
Term
The Na+ - K+ pump is an example of this type of membrane transport, fueled by ATP.
Definition
What is primary active transport?
Term
Concentration gradients created by primary active transport are used to move substances across membranes in this transport system
Definition
What is secondary active transport?
Term
A conformational change occurs, leading to a specific response, when this type of molecule binds to a membrane receptor.
Definition
What is a ligand?
Term
This molecule, attached to the terminal sulfer, is used in fatty acid synthesis and then produced in lipid metabolism.
Definition
What is Acetyl-CoA?
Term
This functional group holds the acetyl group to coenzyme A in acetyl CoA.
Definition
What is a thioester?
Term
Triacylplycerols form emulsions with amphipathetic bile salts after they are digested here.
Definition
What is the lumen of the small intestine?
Term
Before being converted back once across the plasma membrane, a TAG is cleaved into two fatty acids and a monoacylglycerol by this enzyme.
Definition
What is pancreatic lipase?
Term
Enterocytes combine TAGs, cholesterol, phospholipids and proteins to form this class of lipoprotein.
Definition
What are chylomicrons?
Term
Chylomicrons are removed from the blood by these, the body's primary lipid storage cells.
Definition
What are adipocytes?
Term
TAGs are converted to fatty acids and glycerol by this enzyme.
Definition
What is lipoprotein lipase?
Term
This class of lipid can be reconverted to TAGs, used in membrane synthesis, or degraded for energy.
Definition
What are fatty acids?
Term
Fatty acids, in the form of acyl-CoA, are added to this molecule, with the help of acyl-CoA synthetase.
Definition
What is glycerol?
Term
Two Acyl CoA are added to glycerol-3-phosphate, forming this molecule.
Definition
What is phosphatidic acid.
Term
Derived from phoshatidate, this molecule can be converted to triacylglycerol, phosphatidylcholine, or phosphatidylethanolamine.
Definition
What is 1,2-Diacylglycerol?
Term
This enzyme removes fatty acid units from TAGs.
Definition
What is a lipase?
Term
Triacylglycerols and phosphoacylglycerols undergo this process to form fatty acyl groups.
Definition
What is hydrolysis?
Term
Membrane bound proteins and carnitine help fatty acyl groups reach the mitochondrial matrix where they will undergo this process.
Definition
What is oxidation?
Term
This enzyme brings fatty acyl groups into the intermembrane space.
Definition
What is acyl CoA synthase?
Term
When combined with this molecule, fatty acyl groups can cross the inner membrane into the matrix.
Definition
What is carnitine?
Term
This is the functional group formed between the alpha and beta carbons during the first step of fatty acid degradation.
Definition
What is an alkene?
Term
The party gets started in step two of beta oxidation when the alkene is converted to this functional group at the beta carbon.
Definition
What is an alcohol?
Term
Alcohol is oxidized to this functional group in step three of beta oxidation.
Definition
What is a ketone?
Term
Step four of beta oxidation cleaves one of these molecules from the ketone.
Definition
What is an acetyl CoA or an acyl CoA?
Term
The number of acetyl CoA produced in Beta oxidation is always this, when compared to FADH2 AND NADH,
Definition
What is one more?
Term
A high fat -low carb diet, starvation, and diabetes can all lead up to a buildup of this, causing the breath to smell like acetone.
Definition
What is acetyl CoA?
Term
An excess of ketone bodies is known as this.
Definition
What is ketosis?
Term
During starvation, this organ can use ketone bodies as an emergency energy source.
Definition
What is the brain?
Term
Ketosis overwhelms the body's ability to perform this function, forcing H+, K+ and Na+ into the urine.
Definition
What is buffer the blood?
Term
Ketone bodies are synthesized to provide energy for the brain in the absence of this essential molecule.
Definition
What is glucose?
Term
Acetyl-CoA and this molecule combine to form citrate, which is transported from the matrix to the cytosol for fatty acid synthesis.
Definition
What is oxaloacetate?
Term
Acetyl-CoA is carboxylated to malonyl-CoA in fatty acid synthesis by this enzyme
Definition
What is acetylCoAcarboxylase?
Term
This molecule carries the CO2 needed carboxylate acetyl-CoA to malonyl-CoA.
Definition
What is biotin?
Term
Carboxylation of acetyl-CoA requires this energy source for recarboxylation of biotin cofactor.
Definition
What is ATP
Term
This is the rate limiting step of carboxylation with biotin cofactor.
Definition
What is recarboxylation of biotin cofactor?
Term
Fatty acid synthesis begins with acetyl-CoA and malonyl-CoA being primed with this molecule.
Definition
What is acyl carrier protein (ACP)?
Term
This common molecule is produced when malonyl-CoA is added to a fatty acid.
Definition
What is carbon dioxide?
Term
The beta ketone is reduced to this functional group in the third, frat style, step of fatty acid synthesis.
Definition
What is an alcohol?
Term
The alcohol gets dried up in the fourth step of fatty acid synthesis, producing this.
Definition
What is a trans-alkene?
Term
The final step of fatty acid synthesis reduces the alkene to this functional group.
Definition
What is an alkane?
Term
This is the reducing agent in fatty acid synthesis. It is made in the pentose monophosphate step along with ribose.
Definition
What is NADPH?
Term
This is the maximum number of carbons that can be combined into a fatty acid in the cytosol. Numbers higher than this must be transferred back into the mitochondia.
Definition
What is 16?
Term
This is the highest numbered carbon in a fatty acid chain that mammals can change into an unsaturated fat
Definition
What is the 9th carbon?
Term
For fatty acid synthesis of more than 16 carbons, this structure will add 2 carbon units supplied by malonyl-CoA.
Definition
What is the endoplasmic reticulum?
Term
For fatty acid synthesis of more than 16 carbons, this structure will add 2 carbon units supplied by acetyl-CoA.
Definition
What is the mitochondrion?
Term
Anything with a C=C bond beyond carbon 9 is this kind of fatty acid.
Definition
What is an essential fatty acid?
Term
Using NADH and molecular oxygen, double bonds in unsaturated fatty acids are typically added in this cellular structure.
Definition
What is the endoplasmic reticulum?
Term
This is the thioester for beta oxidation.
Definition
What is CoA?
Term
This is the thioester for fatty acid synthesis.
Definition
What is ACP?
Term
This is the electron carrier for beta oxidation.
Definition
What is NADH?
Term
This is the electron carrier for fatty acid synthesis.
Definition
What is NADPH?
Term
Glucagon inhibits this enzyme, halting the production of malonyl-CoA
Definition
What is acetyl-CoA carboxylase?
Term
This substange promotes lipogenesis by stimulating acetyl-CoA carboxylase and inhibiting lipolysis.
Definition
What is insulin?
Term
This molecule will have the same effect as glucagon in fatty acid metabolism.
Definition
What is epinephrine?
Term
This molecule stimulates the breakdown of glycogen and TAGs, and inhibits fatty acid synthesis.
Definition
What is glucagon?
Term
This molecule promotes glycogen synthesis, the formation of fatty acids, and inhibits lipolysis.
Definition
What is insulin?
Term
This is the starting compound of all steroids.
Definition
What is acetyl-CoA?
Term
The first major conversion, and rate limiting step of steroids, is when three acetyl groups are converted to this.
Definition
What is mevalonate?
Term
This is the key enzyme for cholesterol synthesis.
Definition
What is HMG-CoA?
Term
Two isopentenyl pyrophosphates, one is first isomerized, are the building blocks for this molecule.
Definition
What is cholesterol?
Term
This is the mechanism type used in cholesterol synthesis.
Definition
What is cation-based?
Term
You need this many isopentyl pyrophosphates to make a squalene.
Definition
What is six?
Term
This lipid is converted to bile acids, and then bile salts, in the liver.
Definition
What is cholesterol?
Term
A sugar, a phosphate, and a base are the building blocks for this molecule.
Definition
What is a nucleotide?
Term
This linkage connects sugars in the phosphate backbone of DNA and RNA.
Definition
What is a phosphodiester linkage?
Term
Sugars attach at N1 of these single ring bases.
Definition
What are pyrimidines?
Term
Sugars attach at N9 of these double ringed bases
Definition
What are purines
Term
Adenine (A) and guanine (G) are this type of base.
Definition
What are purines?
Term
Cytosine (C), Uracil (U), and Thymine (T) are all this type of base.
Definition
What are pyrimidines?
Term
A nucleotide has a phosphate group attached at C5' and a sugar attached at this position.
Definition
What is the C1' position?
Term
The nitrogenous base and sugar of a nucleotide are connected at the C!' position with this type of linkage.
Definition
What is a beta glycosidic linkage?
Term
A nucleoside will have this conected at the C5' position instead of a phosphate group.
Definition
What is an alcohol?
Term
These bases are catabolized to uric acid and excreted.
Definition
What are purines?
Term
These bases are broken down into malonate and methylmalonate before they they are excreted in the urine.
Definition
What are pyrimidines?
Term
De novo synthesis of pyrimidimes is catalyzed by this enzyme.
Definition
What is carbamoyl phosphate synthetase II?
Term
Carbamoyl phosphate and this amino acid react to form the pyrimidine base, carbamoylaspartate.
Definition
What is aspartate?
Term
This molecule is made when carbamoylaspartate is converted to dihydroorotate.
Definition
What is water?
Term
As dihydroorotate is converted to orotate, this energy filled molecule is produced.
Definition
What is NADH?
Term
As orotate is converted to orotylidate, the N1 attacks PRPP in this type of reaction.
Definition
What is an Sn2 reaction?
Term
As UTP is converted to CTP, an ATP is used and Glutamine donates this to the process.
Definition
What is a nitrogen?
Term
This enzyme reduces all four ribonucleotides to produce deoxyribonucleotides.
Definition
What is ribonucleotide reductase?
Term
A hydroxyl group is lost at this position on ribose during reduction to a deoxyribonucleotide
Definition
What is position 2' ?
Term
This is the final donor in ribonucleotide reduction.
Definition
NADPH
Term
A disulfide bond is indicative of this form of ribonucleotide reductase.
Definition
What is the oxidized form?
Term
The difference beween dUMP and TTP can be seen in the addition of this functional group at C5.
Definition
What is a methyl group?
Term
The addition of this atom will halt thymidylate synthase cold.
Definition
What is Fluorine?
Term
Add glutamate, p-aminobenzoate (PABA), and a substituted pteridine ring together, and you'll have this on your hands.
Definition
What is folate?
Term
These are the two important binding sites on a pteridine ring.
Definition
What are the N-5 and N-10 positions?
Term
This is a major target for antibacterial drug therapy.
Definition
What is dihydrofolate reductase (DHFR)?
Term
When regenerating THF from DHF, this provides the reducing power.
Definition
What is NADPH?
Term
The reduction of DHF to form THFis catalyzed by this enzyme.
Definition
What is dihydrofolate reductase?
Term
These agents are important anti-cancer and microbial infection therapies.
Definition
What are folate antagonists?
Term
Folate antagonists block the regeneration of this molecule by inhibiting the enzyme DHFR.
Definition
What is THF?
Term
Ribonucleotide reductase has an active site and two allosteric regulatory sites. One regulates overall activity, the other regulates this.
Definition
What is specificity?
Term
Purine catabolism produces this, which reduces oxidative species in the blood.
Definition
What is urate (uric acid)?
Term
This painful condition is caused when high levels of uric acid n the blood lead to deposits of sodium urate in the kidneys and joints.
Definition
What is gout?
Term
The structure of this molecule is similar to purines, allowing competitive inhibition of synthetic enzymes.
Definition
What is allopurinol?
Term
DNA acts as this in regards to its own replication.
Definition
What is a template?
Term
The information carried by DNA is copied into an intermediate form, named this.
Definition
What is messenger RNA (mRNA)?
Term
mRNA is used as a template to direct the proper assembly of these into the protein gene product.
Definition
What are amino acids?
Term
In DNA, deoxyribose is missing a hydroxyl group on this carbon.
Definition
What is the 2' carbon?
Term
New strandsof DNA are synthesized in this direction.
Definition
What is the 5’ to 3’ direction?
Term
These enzymes do the building in replication of genomic DNA.
Definition
What are DNA polymerases?
Term
DNA polymerase uses dNTP (C,A,G,T) as substrate, releasing this as a byproduct.
Definition
What is pyrophosphate?
Term
DNA replication begins when initiator proteins pry the strands apart requiring, but no hydrolyzing, this molecule
Definition
What is ATP?
Term
This enzyme further unwinds the DNA strand in replication.
Definition
What is DNA helicase (dnaB)?
Term
This enzyme creates the RNA primer necessary for DNA replication.
Definition
What is DNA primase?
Term
Replication finally begins when this enzyme attaches to the unwound DNA strand.
Definition
What is DNA polymerase III ?
Term
Helicase reads the DNA from 5' to 3', so it attaches to this strand.
Definition
What is the lagging strand?
Term
The origin site for DNA replication is rich in these two bases.
Definition
What are A and T?
Term
DNA polymerase III is held onto the strand when this protein is attached prior to replication.
Definition
What is a sliding clamp protein?
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