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Biochem exam 3
Biochem 3
121
Biochemistry
Graduate
10/31/2010

Additional Biochemistry Flashcards

 


 

Cards

Term
glycerophospholipids
Definition

made of phosphatidic acid (an intermediate from triacylglycerol biosynthesis)

most common phospholipid

Term
biosynthesis of glycerophospholipids
Definition

made in most cells of the body

Diacylglycerol+CDP-Choline=phosphatidylcholine

CDP-diacylglycerol+inositol=phosphatidylinositol

note: CDP must come from somewhere

phosphatidylserine->phosphatidylcholine (in liver)

Term
remodel/degrade glycerophospholipids
Definition

actions of PLA1 and PLA2 can add/remove to fatty acyl

PLA2/PLC also act in cell signaling

PLA2 releases arachidonic acid from membrane

Term

Sphyngomyelin

Ceramide

Definition

most common in CNS

ceramide: basic unit of sphingolipids

Sphingosine+phosphatidylcholine->sphingomyelin

Term
phosphatidylcholine in lung surfactant
Definition

(PC) is part of lung surfactant

has 2 saturated residues (DPPC)

prevents lung colapse

less than 24 weeks, mostly sphingomyelin. 35 weeks become DPPC

adult resperatory distress syndrome: surfactant secreting alveolar type II pneumocites destroyed

Term
Eicosanoid
Definition

mediate inflamation/hemostasis/muscle contraction/BP

produced in cells, used as needed (not stored)

made of arachidonic acid

 

Term

COX pathway

lipoxygenase pathway

Definition

COX: Arachidonic acid->prosteglandin(PGs) + thromboxanes(TXs)

PGI1: inhibit platelet clumping,cause vasodilation

TXA2: stimulate platelet clumping,cause vasoconstriction

PGF2: stimulate uterine contraction during birt

Lipoxygenase: arachidonic acid->leukotrienes(LTs)

LTC/LTD/LTE: parts of SRS-A.  cause bronchoconstriction/vasoconstriction/increas vascular permiability

Term
corticosteroids
Definition
decreas inflamation by inhibiting phospholipase A2
Term

NSAIDS

 

Definition

NSAIDS: inhibits COX1 and COX2

selective COX2 inhib: celecoxib(celebrex) stops inflamation (viox and bextra taken out)

 

Term
Glycolipids
Definition

sugar-containing derivitives of ceramide

found most in nerve tissue as cell membrane

used for communication

(eg) antigens (ABO), or receptors for bacterial toxins

Term

lysosomal storage diseases

Niemann-Pick A/B

which enzyme damaged?

what lipid buildup?

symptoms?

Definition

Nieman-Pick: lacks enzyme sphingomyelinase

can't convert sphingomyelin into ceramide

acumulates sphingomyelin

symptom: hepatosplenomegaly/retardation (type A)

Term

Lysosomal Storage Disease

Fabry

what enzyme damaged?

what lipid buildup?

what symptoms?

Definition

damage: α-galactosidase. 

cant turn Gal-Gal-Glc-Cer into Gal-Glc-Cer

buildup of Gal-Gal-Glc-Cer (globosides)

Symptoms: skin rash/kidney & heart failure

treated with Fabrazyme

Term

Lysosomal Storage Disease

Gaucher

what enzyme damaged?

what lipid buildup?

what symptoms?

Definition

most common lysosomal storage disease

damage to β-glucosidase

cant convert glucocerebroside into ceramide

buildup of glucosylceramde (glucocerebrosides)

symptoms: hepatosplenomegalt, osteoperosis of long bones

treated with cerezyme

Term

Lysosomal Storage Disease

Tay-Sachs

what enzyme damaged?

what lipid buildup?

what symptoms?

Definition

lacks β-Hexosaminidase A

cant turn GM2 Ganglioside into GM3 Ganglioside

buildup of GM2 Ganglioside

Symptoms: retardation, muscular weakness, red macula, blindness

Term
Cholesterol
Definition

13 nobel prizes

complex 4 ring structure

synthesized from a 2 carbon substrate

essential function in membranes of animal cells

makes hormones and bile acids

forms plaques resulting in MI and strokes

Term
making cholesterol
Definition

3 Acetyl CoAs-> HMG CoA

reduction of HMGCoA to Mevalonate (rate limiting).

converting Mevalonate into cholesterol by isoprenoid intermediates

occurs in liver cytosol

Acetyl CoA from pyruvate or fatty acids

Term
regulating biosynthesis of cholesterol
Definition

phosphorylate HMGCoA reductase = inactivated

AMP levels (inactivates)

hormones insulin (activates)/glucagon (inactivates)

Term
increasing cholesterol
Definition

(at golgi)

S2p and S1p triggers SCAP to release SREBP to nucleus

HMG CoAR releases to raise cholesterol

Term
decreasing cholesterol
Definition

at ER, cholesterol causes NSIG-SCAP-SREP complex to conformational change, so complex stays at ER

when no cholesterol, SCAP released from complex, and travels to Golgi

Term
how do statins work?
Definition
regulates HMGCoA reductase activity
Term
how does fosamax work?
Definition

inhibits FPP synthesis farnesilation

decreases osteoclast mediated breakdown of bone

Term
bile formation
Definition

cholesterol 7α-hydroxylase catalizes rate limiting

high cholesterol increases, bile reduces

after synthesis in liver, primary bile acid conjugated by gly or tyrene

 

Cholesterol+enzyme->CholylCoA

CholylCoA+Glycine=glychocolic acid (bile salt)

Term
Cholelithiasis (gallstones)
Definition

due to lack of bile salts in bile causes cholesterol precipitation

Term

making steroids

where

rate limiting

Definition

in adrenal cortex/testes/ovaries

rate limiting: cholesterol-> pregnenalone by mitochondrial desmolase.

pregnalone->progesterone

Term

steroid hormone synthesis diseases

Cushing's syndrome

Addison's disease

congenital adrenal hyperplasia

Definition

Cushing's: excess adrenal synthesis of cortisol

Addison's: adrenal insufficiency

CAH: overproduction of androgen

Term
transport of cholesterol in blood
Definition

transfered as lipoproteins (amphipathic)

Chylomicrons: triglycerides

LDL(bad) HDL(good)

Term
Reverse Cholesterol transport
Definition

HDL

"borrowed cholesterol transport"

transports excess cholesterol to liver for excretion

ABCA1:transport protein

LCAT: esterifies cholesterol to keep unidirectional movement of cholesterol

APP A1: activates LCAT

Term

Familial Combined Hyperlipidemia

Familial Hypercholesterolemia

Polygenic Hypercholesterolemia

Definition

(FCH)

leads to heart disease

overorduction of APOB-100 containing proteins

(FH)

less LDL receptors, so more LDL in blood

polygenic

non familial, leading cause of Hight cholesterol

Term

pharmacological regulation of cholesterol

HMG CoA reductase inhib

Bile acid binding resins

Ezetamide

Nicotinic Acid

Fibrates

Definition

HMG COA Reductase inhib: increase liver clearance of LDL, combo with ezetamide

Bile Acid binding resins: binds bile salts, prevent reabsorption, lowers lipid absorption, increase liver clearance of LDL

Ezetamide: acts on intestne&liver, inhibits NPC1L1 uptake of cholesterol, increase cholesterol loss in bile, combo with symvastatin

Nicotinic Acid: lowers liver synthesis of VLDL

Fibrates: inhibits liver synthesis of VLDL

Term
3 carbon backbone of lipids synthesized from intermediates from
Definition
glycolysis
Term
binding of glucogon in liver will ___ of HMGCoA and ___ of cholesterol biosynthesis
Definition

phosphorylate

inhibit

Term
gall stones occur when there is a __% of lecithin and a ___ % of cholesterol
Definition

low

high

Term
free fatty acids are transfered by
Definition
albunin
Term
cholesterol is transfered by
Definition
HDL and LDL
Term
to detox free radicals, erythrocytes use
Definition
reduced glutathione
Term
what happens when someone who is G6PD deficient takes oxidative drugs?
Definition
hemolytic deficiency
Term
what emulsifies dietary lipids?
Definition
bile salts
Term
long chain fatty acids produced during lipid digestion enter the circulation as
Definition
triglycerides
Term
in fed state, free fatty acids generated in circulation by
Definition
lipoprotein lipase
Term
during fasting, free fatty acid released from
Definition
adipose tissue
Term
most abundent in lung surfactant
Definition
DPPC
Term
linoleic acid is needed to make
Definition
arachidonic acid
Term
what turns phosphotidylcholine into diacylglycerol and phsophocholine
Definition
phospholipase C
Term
how are triglycerides in blood?
Definition
chylomicrons and VLDL
Term
lipoprotein lipase hydrolizes
Definition
triglycerides in chylomicrons
Term
fatty acid synthesis from acetyl coa occurs in liver cell's __
Definition
cytosol
Term
dietary tryglycerides in lumen are hydrolized by
Definition
pancreatic lipase
Term
insuline cause clearance of chylomicrons by activating this enzyme___
Definition
lipoprotein lipase
Term
carnitine deficiency inhibits
Definition
fatty acid oxidation
Term
damage to perivenous hepatocytes makes it hard for
Definition
fatty acid synthesis
Term
fatty acid released from adipose tissue because action of
Definition
hormone sensative lipase
Term
what enzyme is not needed for urea synthesis
Definition
glutaminase
Term
impaied urea synthesis results inelevation of __ in blood
Definition
amonium ion
Term
urea synthesis in liver because of enzyme
Definition
argenase
Term
what AA becomes NO?
Definition
arginine
Term
nicotinamide is made of niacin and
Definition
triptophan
Term
what AA makes bile salts?
Definition
taurine
Term
increased cholesterol ___ LDL receptors
Definition
decrease
Term
damage to apolipoprotein CII will result in
Definition
hypertrygliceridemia
Term
what is not made from cholesterol
Definition
vitamin K
Term
HDL transfers cholesterol from
Definition
extrahepatic tissue to liver
Term
lack of adrena enzyme to turn __ into __ makes a woman look manly
Definition
progestins to glucocorticoids and mineralicorticoids
Term
LDL is made from
Definition
is made in blood by remodeling VLDL
Term
epinepherine stimulates
Definition
lipoprotein lipase
Term
cholesterol in healthy adults
Definition
less than 200
Term
glucocorticoids act on
Definition
phospholipase A2
Term
eicosanoids are made of
Definition
arachidonic acid
Term
Bile acid + glycene/taurene
Definition
more effective fat absorption
Term
making steroids =
Definition
many hydroxylation reactions
Term
deficient 21 hydroxylase
Definition
cant make glucocorticoids
Term
chylomicron synthesis raised with
Definition
high fat diet
Term
fatty acid biosynthesis inhibited by
Definition
palmitoyl coa
Term
lowers action of hormone sensative lipase
Definition
insulin
Term
B6 needed for
Definition
transaminases
Term
Protein Digestion
Definition

Stomach: Hcl denatures protein, pepsinogen also breaks down proteins

SI: Bicarb neutralizes PH, Trypsin/chimotripsin/elastase breaks protein bonds.  smaller pieces hydrolyzed by exopeptidase

Term
Absorption
Definition

transported through brush borders into intestinal epithelial

dipeptides hydrolized into AA

single AA released into circulation

Term
AA metabolism
Definition

1 remove amino group

2 amino becomes amonia and aspartate

3 use amonia and aspartate to make urea for scretion

Term
transamination (catabolism)
Definition

1 α-amino group transfered to α-ketogluterate to make α-ketoacid and glutamate

reversible

caried out by vitamin B6 dependent aminotransferases.  aminotransferases specific to AA

glutamate can send amino group to oxaloacetate to make aspartate (enzyme AST)

or removed to make amonia (enzyme glut D)

Term
oxidative deamination
Definition

release amonia for urea cycle

catalized by glutamate dehydrogenase

glutamate can use either NAD or NADPH

negative effectors: ATP/GTP

Posative effectors: ADP/GDP

Term
urea cycle
Definition

amonia from glutamate

CO from bicarb

made in liver, sent to kidney

aspartate->urea and fumerate

low PH: secrete more NH4

high PH: secrete more NH3

Term
liver cirrhosis
Definition

BUN (urea in blood) decreases

amonia in blood increase b/c liver not removing it for glutamate synthesis and urea synthesis

Term
using NH3 and NH4
Definition

NH3 is substrate of urea synthesis, so urea synthesis goes up, also high P causes proteins/ezymes to work quicker

High PH: secrete more urea

low PH:secrete less urea, more NH4, so bicarb not used for urea, so can combo with acid to make C02

Term
what vitamins used for AA synthesis?
Definition
B6,B12,Folate
Term

AA breakdown

4 carbon oxidized AA

4 carbon reduced AA

5 carbons in a row

3 carbons

Definition

4 oxidized: oxaloacetate

4 reduced: succinyl

5: ketogluterate

3: pyruvate

Term
folate
Definition

reduced folate=folic acid

folate needed for mitosis, cofactor for enzymes to add a c from AA t purine/pyr

folate and B6 needed for methylation

methylation of DNA=activate DNA for mitosis

Term

PKU

Definition

deficient of phenylalanine hydroxylase

cant turn phenylalanine->tyrosine

 

Term

MSD

Definition

lack of branched chain α-ketoacid dehydrogenase

cant release leucine/valine so plug AA in brain cell=adema/coma

Term
HMP oxidative branch
Definition

irreverseable

acounts for 31%

1.) G6P->6-phosphogluconolactone by G6PD (rate limiting).  NADPH competatively inhibits G6PD

 

2.) 6-phosphogluconolactone->6-phosphogluconate by 6-phosphogluconolactone hydrolase

 

3.) 6-phosphogluconate->R5P by 6-phosphogluconate dehydrogenase

 

net = G6P->1 R5P and 2 NADPH

Term
HMP nonoxidative
Definition

reversible

acounts for 69%

turns R5P<->F6P and glyceraldehyde-3-P (glycolitic intermediates)

Term
when to make what?
Definition

cell doing reductive biosynthesis,no division: NADPH

6 glucose->12 NADPH (when no R5P needed)

 

cell devides, no reduction biosynthesis: R5P

5 G6P->6 R5P (no NADPH made) ATP consumed in glycolysis

 

 

Term
Fate of NADPH
Definition

used as an antioxident

also makes superoxides to help WBC kill bacteria

used to make NO to help WBC kill bacteria

Term
how is H2O2 detoxified?
Definition

Enzymatic: catalase and Glutathione peroxidase (more important), needs NADPH

non-enzymatic: Vitamin C/E, G-SH

Term
G6PD deficiency
Definition

class 1-4 higher class more extreme

sex linked, biggest effect on RBC

hemolitic anemia when oxidative stress.

low G6P causes hemolysis b/c WBC eats un-ID RBC

Term
random HmP info
Definition

occurs in perivenous liver cells

doesnt use ATP

oxidative phosphorylation doesnt deal with NADPH

Term

Digestion

Stomach:

Small Intestine:

 

Definition

Stomach: Mechanical breakdown, important for infants breakdown milk.  adults breakdown 10-30% here.

Lingual Lipase & gastric Lipase hydrolize short to medium fatty acids.

 

Small Intestine: gut endocrine cells release:

Secretin: causes pancreas to release bicarb to neutralize PH

CCK: stimulates pancrease to releas digestive enzymes (pancretic lipase/cholesteryl ester hydrolase/phospholipase A2) and bile, and decreas motility, so less food goes into SI

Term

Emulsification

 

Definition

Mediated by bile salts made from cholsterol

surfactant to break clumps into small pieces, with help from pancreatic lipase

Term
triacylglycerol + 2 H2O
Definition

--------------------------->2fatty acids+2monoacylglycerol

pancreatic lipase + colipase

Term
Cholesteryl ester + H2O
Definition

------------------------> fatty acid + cholesterol

cholesteryl ester hydrolase

Term
Phosphatidylcholine + H2O
Definition

--------------------------------> Fatty acid + LysoPC

phospholipase A2

 

Term
Absorption
Definition

fat products  combine w/ bile salts to make micells

hydrophobic & bile salts are in mycells, phylic outside

mycells can pass through brush border lumen enterocyte

Term
Export of Lipids
Definition

free fatty acids are activated by conjugation with CoA "fatty aceyl-CoA synthesis"

shipped out in lipoprotein particles (chylomicrons) into lymphatic system -> blood.

Term
orlistat (xenical)
Definition

ALLI

fat not absorbed in intestine

inhibits pancreatic lipase

decreases absorption of triglycerides

 

 

Term
Cholestyramine
Definition

Questran

fat not absorbed in intestine

binds bile salts, preventd reabsorption

increases body clearance of LDL-cholesterol

Term
Eztimide
Definition

Zetia

acts at intestine and liver through enterohepatic circulat

inhibits NPC1L1-mediated uptake of cholesterol by enterocytes

increase loss of cholesterol in bile

combined with simvastatin

 

Term

triacylglycerols (triglycerides)

Phospholipids

Definition

Triglycerides: 90% of fats.  fuel reserves.  oxidation = acetyl CoA, FADH2, NADH.

Phospholipids: structural for membranes, and signaling

 

starvation, phospholipids  metabolized into water soluble ketones

Term
transporters for fat absorption
Definition

FATP-4

NPC1L1

SR-B1

Term
export of cholesterol
Definition

ABCG5

ABCG8

Term

Lipid Malabsorption

loss of lipids in feces (steatorrhea)

Cystic Fibrosis

Celiac Disease

Crohn's disease

Cholelithiasis

 

Definition

Cystic Fibrosis: most common fatal genetic disease in US.

acumulation of mucous causes pancreas insufficiency, lipid malabsorption. 

treat: high protein/med/high fat diet.  enteric pancreatic enzymes

 

Celiac: damaged intestine mucosa by glutten protein

Crohn's: inflamation of intestinal mucosa

Cholelithiasis: gallstones

Term
Biosynthesis of fatty acids & triglycerides
Definition

in liver, lactating mammary, some in kidney adipose

citrate shuttle exports acetyl CoA out of mitochondria

carboxylation of acetyl CoA to malonyl CoA= rate limiting

synthesis needs ATP& NADPH

Term
transfer of acetyl CoA from mitochondria to cytosol
Definition

acetyl changed to Citrate to exit mitochondria, (an intermediate form of of TCA cycle) in cytoplasm, cytrate cleaved by citrate lyase to regenerate acetyl CoA.

 

occurs when mitochondrial citrate is high (high ATP)

Term

carboxylation of Acetyl CoA

 

Definition

rate limiting

Acetyl CoA + ATP-----ACC---> Malonyl CoA +ADP + P

 

biotin dependent

ACC allosteric regulation by citrate (+)& long chain acyl CoA (-)

phosphorylate/de by insulin (act),glucogon,EP (inact)

AMP-activated protein Kinase (inact)

 

Term
Palmitic Acid
Definition

made from Acetyl CoA

Palmitic Acid can be elongated/desaturated. 

catalized by enzymes in the ER

can add double bonds at C 4 5 6 9.

Essential Fatty Acid: linoleic acid because = at c 9,12,15

Term
storing fatty acids as triglycerides
Definition

2 activated fatty acids are added to a glycerol phosphate

a phosphate group is removed, and a 3rd fatty acid is added to make triacylglycerol

triacylglycerols form lipid droplets for energy storage. 

made in liver, incorperated into LDL for export

Term
release of fatty acids from triacylglycerols
Definition

activate enzyme HSL to remove first fatty acid from triacylglycerol

other lipases break off another fatty acid

Free Fatty Acids (FFA) enters blood, bind to albunun to go to organs/tissue

Term

regulation of lipolysis and release of FFA

INSULIN

EP

Perilipin

Glyceroneogenesis

Definition

Insulin: fasting=low insulin=disinhibits HSL activity

EP: promotes HSL through cAMP-mediated phosphorylat

Perilipin: protein on surface of lipid droplets, limits HSL access to tryglycerides. HSL can work if perilipin phosphorylated, so falls off of droplet.

Glyceroneogenesis: 30-40% released FFA reesterified to glycerol within adipocyte.

Term
Carnitine shuttle
Definition

brings long chain fatty acyl CoAs

Malonyl CoA regulate the shuttle

Carnitine Acyltransferase 1: brings long chain fats into intermembrane mitochondria space

Carnitine Acyltransferase 2 brings them into matrix

Term
Mitochondrial oxidation
Definition

oxidation-hydration-oxidation-thiolysis

removes acetyl parts of fatty acid

makes FADH2 and NADH

1 palmitoyl CoA makes net 129 ATP

Term

alternate fatty acid oxidation

Peroxisomes:

ER (Microsomal)

Definition

Peroxisomes: verry long chain fatty acids, α β oxidation (no net ATP).  smaller pieces sent to mitochondria

 

ER: Omega oxidation, cytochrome P450, dicarboxylic acids

Term
AMP Kinase
Definition

AMP activates AMPK (means high energy present)

high AMP activates AMPK by

Allosteric activation, phosphorylation, inhibit dephos

 

AMP also regulates digestive enzymes, regulates food intake.

Term

MCAD deficiency

medium chain acyl CoA Dehydrogenase

Definition

blood medium chain fats go up

glucose in blood goes down

ketone bodies go down

severe hypoglycemia

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