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Biochem ETC
KYCOM Block 3
65
Biochemistry
Graduate
10/23/2012

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Term
What is the general overall story of ETC
Definition
Glucose is oxidized to CO2 and water coupled to the transfer of electrons of coenzymes FAD and NAD to yield energy as NADH and FADH2. They donate electrons to electrons carriers which makes energy for a pump that creates a gradient that is coupled to ATP production
Term
What is an alternative route for the energy made from ETC, other than ATP production
Definition
Ancillary reactions (Ca transport in mitochondria making heat)
Term
Where does ETC occur
Definition
Inner mito membrane
Term
At what point does the ETC turn off
Definition
It only turns off when oxygen isn't present, it is Always running
Term
What is the outer membrane permeable to
Definition
Most ions and small molecules
Term
What is the inner membrane permeable to
Definition
Few ions or molecule.s need carriers
Term
What is the inner mitochondrial membrane made of
Definition
Lots of proteins (50% are ETC proteins), very convoluted forming cristae to increase surface area
Term
What is the mitochondrial matrix made of
Definition
50% protein, gel like, enzymes for oxidating pyruvate amino acids, fatty acids beta-oxidation, and TCA. NAD, FAD, ADP, Pi. Mitochondrial DNA and replication / expression tools.
Term
What drives transfer of electrons in ETC
Definition
NADH is a good electron donor and oxygen a good acceptor
Term
What happens to the strength of the donors as you go through the etc
Definition
Each donor is weaker and acceptors are stronger
Term
What is the common intermediate between oxidation and oxidative phosphorylation
Definition
Protein gradient
Term
Where does the NADH and H come form for etc
Definition
Dehydrogenase reactions
Term
Where does NADH enter into the etc chain
Definition
Complex 1
Term
What is another name for complex 1
Definition
NADH dehydrogenase
Term
What occurs in NADH dehydrogenase
Definition
FMN accepts 2H / 2e- making FMNH2 assisted by the Fe/S center
Term
Where does FADH2 enter the etc
Definition
It sends 2H / 2e to cytochrome c
Term
What is coenzyme q
Definition
A non membrane bound lipid electron carrier
Term
Where does coenzyme q take electrons to
Definition
Complex 3: cytochrome BC1
Term
What picks up electrons from cytochrome bc1
Definition
Cytochrome c
Term
Where does cytochrome c take electrons do
Definition
Cytochrome c oxidase, complex 4
Term
What does cytochrome c oxidase do
Definition
Uses Fe and Cu to help use 2H / 2e to reduce oxygen to water
Term
What complexes are not membrane bound in etc
Definition
Cytochrome c and coenzyme q, the electrons carris
Term
What complexes pump protons out in their electron transport exchange
Definition
Complex 1, 3, 4
Term
In regard to the gradient, what is the outside of the mitochondrial membrane like
Definition
Positive with low ph
Term
In regard to the gradient, what is the inside of the mitochondrial membrane like
Definition
Negative, higher ph
Term
Describe the composition and role of a cytochrome
Definition
Has heme, involved in electron transport, reversible oxidized or reduced Fe
Term
Where is the Fo subunit of complex 5 located
Definition
Membrane spaning
Term
Explain the role of the F1 subunit of complex 5
Definition
Rotation of the unit is driven by the gradient, this allows ADP and P to make ATP
Term
What is another name for complex 5
Definition
ATP synthase
Term
In general, what do etc inhibitors do
Definition
Prevent flow of electrons so NADH builds up leading to TCA inhibition, this causes anaerobic glycolysis, increasing lactic acid and decreasing oxygen consumption, aerobic tissues are most effected
Term
What does Amytal do, what is it classified as
Definition
Barbiturate that stops complex 1 of etc
Term
What does rotenone do
Definition
Stops complex 1 of etc
Term
Where is rotenone found
Definition
Insecticide,pesticide, piscicide
Term
What does antimycin do
Definition
Stops complex 3 of etc
Term
What is antimycin found in
Definition
Pisicide
Term
What does positide do
Definition
Kill fish
Term
What does cyanide do
Definition
Irreversibly binds complex 4 in etc, binds iron tight in heme
Term
Why might someone be exposed to cyanide
Definition
House if re, industrial fire, burning polyurethane
Term
what does CN- bind to in ETC
Definition
Fe3+ in heme of complex 4
Term
what does CO do in ETC
Definition
inhibits complex 4 reversibly
Term
what does sodium azide bind to in ETC
Definition
Fe3+ in cytochromes of complex 4
Term
where is sodium azide found
Definition
propellent in airbags, explosives, lab as anti microbial preservitive in sera or other solutions
Term
what does oligomycin do
Definition
binds to complex 5 in ETC closing proton channel leading back to matrix, stops ATP synthesis so also ETC
Term
where is oligomycin found
Definition
tool to study electron transport in lab
Term
where are coupling proteinsfound
Definition
inner mitochondrial membrane
Term
what do coupling proteins do
Definition
allow protons to flow back into matrix without going through complex 5, does not stop ETC but does not make ATP, energy is released as heat
Term
what are examples of coupling proteins
Definition
UPC 1 (thermogenin), synthetic uncouplers, salicylic acid
Term
where is UPC 1 found
Definition
brown adipose
Term
what are synthetic uncouplers
Definition
non-proteins that increase permability of inner mitochondrial membrane to protons which uncouple ETC from ATP production
Term
what is an example of a synthetic uncoupler, what does it cause
Definition
2,4-dinitropherol: weight loss drug, overdose causes fatal hyperthermia
Term
what does salicylic acid do
Definition
uncouples ETC from ATP production, overdose leads to fever and sweating
Term
where is salicylic acid found
Definition
asprin
Term
what is a reactive O2 species formed by
Definition
oxygen improperly turning into water that the end of the ETC
Term
what are the reactive O2 species
Definition
superodixe (O2-), H2O2, hydroxyl radicals (OH)
Term
what do reactive O2 species do
Definition
damage proteins, lipids, DNA, RNA in mitochondria
Term
other than the fact that they damage sruff, why are reactive O2 species a problem
Definition
they mess up the ETC which increases the amount of reactive O2 species making a bad circle of life
Term
how does the body normally combat reactive O2 species
Definition
natural enzymes
Term
what are the natural enzymes the body uses to combat reactive O2 species
Definition
lipid soluble vitamins in membrane (antioxident vitamins, vitamin E), water soluble vitamins in cytosol (vitamin C), superoxide dismutase, catalyase, gltathione peroxidase
Term
what is a reprefusion injury
Definition
decreased O2 > decreased ATP and NADH prodiction. then O2 is suddenly introducd. ETC activity is too much > reactive oxygen species produced
Term
where do the proteins from oxidative phosphorlyation come from
Definition
13/120 are on mitochondrial DNA, the rest are transported into the mitochondria from the nucleus
Term
why does mitochondrial DNA have a higher mutation rate
Definition
reactive oxygen species generation
Term
what do mutations in mitochondrial DNA cause
Definition
oxidative phosphorlyation defects which hurts aerobic tissues causing neuropathies and myopthies
Term
what are examples of mitochondrial DNA mutations
Definition
LHON, MERRF, mitochondrial encephalomyopathy, lactic acidosis, stroke like episodes, leigh syndrome
Term
what is the role of the mitochondria in apoptosis
Definition
may be initiated through intrinsic (mitochondria mediated) path by outer pores of the outer mitochondrial membrane allowing cytochrome C into the cytosol, cytochrome c activates proapoptotic factors to activate proteolytic enzymes (capsases). capsases cleave key proteins leading to morphologicl and biochemical changes of apoptosis
Term
what happens in Fe deficient anemia
Definition
Fe is in the ETC so a defect would lead to faulty ETC and tiredness
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