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Biochem and MolBio: Quiz 1
NU BIOL_SCI 210-B Quiz 1 flash cards
43
Biology
Undergraduate 2
01/17/2008

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Cards

Term
T/F: Oxidation and reduction reactions always occur simultaneously.
Definition
True.
Term
T/F: Even with a negative ^G a reaction may take years to proceed due to a high activation energy.
Definition
True!
Term
T/F: In an intermediate transition state, the free energy is less than that of either the reactants or products.
Definition
False: "If you look at the energy diagram the transition state is higher on the curve and therefore the free energy is more."
Term
T/F: The energy required by a human cell to grow and reproduce is provided by its anabolic metabolism.
Definition
False: it's *catabolic* metabolism (cata- = breaking down to release NRG; ana- = using that energy to build up).
Term
How do atoms form covalent bonds?
Definition
By sharing electrons.
Term
How do atoms form ionic bonds?
Definition
By transferring electrons from one atom to another.
Term
What's the concentration of OH- ions in something with pH 12?
Definition
[OH-] = 10^-2 M. ([OH-] = 10^(14 - pH)
Term
Why is there a dipole moment in water?
Definition
Because O has a higher electronegativity than H.
Term

Life is thermodynamically possible because living things:

* reproduce themselves.

* release heat to the environment.

* increase the degree of order in the universe.

* can carry out a chain of reactions that is energetically unfavorable.

* carry out energetically favorable reactions only.

Definition

Life is thermodynamically possible because living things:  

 

* release heat to the environment.

Term

Properties of water that render it so suited to its role as a medium of life include all EXCEPT:

* Unrivaled ability to form hydrogen bonds.

* Unparalleled ability to orient around nonpolar solutes to promote hydrophobic interactions.  

* Unusually high dielectric constant of water explains water’s ability to surround ions and increase the ions’ attraction for one another.

* The small, but significant, tendency to form H+ and OH- ions.

* None, all are true.

Definition

Properties of water that render it so suited to its role as a medium of life include all EXCEPT:

 

* Unusually high dielectric constant of water explains water’s ability to surround ions and increase the ions’ attraction for one another.

Term

Which of the following statements about enzymes is correct?
* An enzyme can bind to many structurally unrelated substrates.
* Catalysis of an energetically unfavorable reaction by an enzyme will enable that reaction to occur.

* An enzyme can direct a molecule along a particular reaction pathway.
* An enzyme can catalyze many chemically different reactions.
* Enzymes are permanently altered after catalyzing a reaction.

Definition

Which of the following statements about enzymes is correct? 


*  Catalysis of an energetically unfavorable reaction by an enzyme will enable that reaction to occur.

Term

Which of the following is NOT a crucial benefit of using enzymes to catalyze biological reactions?


* Enzymes are highly selective in which reactions they catalyze.
* Enzymes change the equilibrium of a reaction to make it more favorable.

* Enzymes can drive an unfavorable reaction by coupling it to a favorable reaction, either directly or via activated carrier molecules.
* Enzymes make reactions occur faster than without catalysis.
* The activity of enzymes can be modulated by inhibitors and other small molecules to respond to the needs of the cell at each moment.

Definition

Which of the following is NOT a crucial benefit of using enzymes to catalyze biological reactions?

 

* Enzymes change the equilibrium of a reaction to make it more favorable.

 

Term

All of the following statements are true about the relationships between [S], Km and Vmax EXCEPT:


* As the [S] is increased, v approaches the limiting value, Vmax.
* Km = [S] at Vmax/2.
* The rate of the reaction, v, follows a first order rate equation v = K’ [A] and K’ = Vmax/Km.
* The rate of product formed, v, is at Vmax when [S] < Km.
* Km and Vmax assist in finding the rate of the enzyme catalyzed reaction only if the reaction is irreversible.

Definition

All of the following statements are true about the relationships between [S], Km and Vmax EXCEPT:

 

* The rate of product formed, v, is at Vmax when [S] < Km.

Term

All of the following statements about noncompetitive inhibition are true EXCEPT:


* The inhibitor binds to a different site than does the substrate.
* They interact with the enzyme as well as the enzyme-substrate complex. 

* Increasing the concentration of [S] can overcome the inhibition.
* The Vmax value does not remain the same as for a reaction that is not inhibited.
* The inhibitor can cause a conformational change in the enzyme.

Definition

All of the following statements about noncompetitive inhibition are true EXCEPT:

 

* Increasing the concentration of [S] can overcome the inhibition.

Term

A common means of providing energy to an energetically unfavorable reaction in a cell is by:

 

* coupling of ATP hydrolysis to the reaction.
* transfer of a phosphate group from the substrate to ADP.
* generation of a higher temperature by the cell.
* enzyme catalysis of the reaction.
* coupling of the synthesis of ATP to the reaction.

Definition

A common means of providing energy to an energetically unfavorable reaction in a cell is by:

 

* coupling of ATP hydrolysis to the reaction.

 

Term
Name the termini of:
 
a) proteins
b) nucleic acids
Definition
 
 
a) N-terminus and C-terminus (referring to the amine and the carboxylic acid group, respectively)
 
b) 5' and 3' (referring to the numbered C-atom in the ribose) 
Term
T/F: Sugar molecules contain information vital for cell development and survival.
Definition
False.
Term
Name the four major families of small organic molecules in cells.
Definition
  • sugars
  • fatty acids
  • amino acids
  • nucleotides
Term
What's the general formula for monosaccharides?
Definition
(CH2O)n
Term
Name and describe the reaction that links two sugar molecules together.
Definition
A condensation reaction between two hydroxy groups, where a molecule of water is expelled to form an R-O-R bond.
Term
Fun fact: what forms plant cell walls? 
Definition

chitin.

 

it's a polysaccharide of glucose. 

Term
T/F: Living cells only produce D-forms of proteins.
Definition
False.  Living cells only produce L-form proteins.
Term
What are the four types of noncovalent bonds important to protein folding?
Definition
  • hydrogen bonding
    (*--H-*, where * is N, O, or F)

  • van der Waal's interactions
    (Nonspecific and are caused by transient dipoles in all atoms.  Momentary random fluctuations in the distribution of the electrons of any atom give rise to a transient unequal distribution of electrons/dipole.)

  • ionic bonding

  • hydrophobic interactions
    (where water forces hydrophobic groups together to minimize their disruptive effect on the H-bonded network of water molecules).
Term

Define:

 

hydrogen bonding

Definition

A hydrogen atom covalently bonded to a donor atom (D) may form an additional hydrogen bond as a weak association with an acceptor atom (A).
D must be electronegative and thus the covalent D-H bond must be polar.
A must be electronegative and its outer shell must have at least one nonbonding pair of electrons that attracts the δ+ charge of the hydrogen atom.

 

Classic example is water; standard h-bonding atoms include N, O, F 

Term
Why are noncovalent bonds vital for enzymes?
Definition

With regard to their substrates, multiple noncovalent interactions can make binding sites very specific.

 

And, obvs., all proteins need noncovalent bonds to fold into a 3D shape.

Term
T/F: Proteins have all the information they need to fold up properly.
Definition

True.

 

They have all the information and structure to fold up correctly, but they sometimes need a molecular chaperone to keep them sequestered from making noncovalent bonds with atoms in their environment.

Term
How is life predicated on the phenomenon of noncovalent bonds?
Definition
Noncovalent bonds can break and reform, which allows for regulation of life processes.  If the only sort of bonding were covalent, the cell would be paralyzed!
Term
T/F: Water can make 4 H-bonds per molecule.
Definition

Totally true, you guys.

 

  •  The O atom can make 2 H-bonds.
  • Each H atom can make 1 H-bond.
Term

Define:

 

hydration shell

Definition

Water solvates ions.

 

Because of its polar properties, water can interact or dissolve other polar compounds and compounds that ionize (electrolytes).  Water's O- aligns with the cations of an electrolyte and its H+ orients towards the anions.

Term
________ molecules have both polar and nonpolar groups (are both hydrophilic and hydrophobic).
Definition

amphipathic

 

(alt: amphiphilic)

Term

Define:

 

micelle

Definition

In water, a micelle is a cluster of amphipathic molecules, with the hydrophilic sections pointing outward, and the hydrophobic sections sequestered in the center

 

These often form colloid.

Term

Multi-part:

 

What is a colligative property?

 

Name 4 colligative properties of water that change when a solute is dissolved in it. 

Definition

A property of solutions that depends on the quantity of molecules of solute, but not on their chemical nature.  In water, solutes impose local order so that lattices/crystals can't form in water, nor can bonds be broken as easily.

  • Freezing point depression
  • Boiling point elevation
  • Vapor pressure lowering
  • Osmotic pressure effects

 

Term

Define:

 

osmotic pressure

Definition
Osmotic pressure results from water seeping through a semi-permeable membrane, from a solution with a low [solute], to go dilute a solution with a high [solute].  This impulse results in pressure.
Term
If the pH of a solution is 4, what is its pOH?
Definition
10.
Term

Define:

 

strong electrolyte

Definition

A substance that (almost) completely dissociates in solution.

 

ex.: HCl, NaOH 

Term
What are the Arrhenius definition of acids and bases?
Definition
Substances that, in water, dissociate to yield H+ and OH- ions, respectively.
Term

Define:

 

pKa 

Definition
the pH when half of a certain molecule is dissolved/dissociated in solution, and when half is neutral/nondissociated.
Term
Using the Homosexual-Hasselhoff equation, determine the pH of phenol in solution (pKa = 10), where the concentration of PhOH is 2M and [PhO-] is 0.5M.
Definition

pH = pKa + log [A-]/[HA]

 

pH = 10 + log (.5/2)

 

pH = 9.4 

Term
Why are buffers so important in cells?
Definition
Because if the pH were to depart from the pKa by even half a point, the dissociation ratio of molecules changes from 50/50 to 90/10 (or more), and cell processes would get all fucked up.
Term
What is the major and minor buffering agents inside the cell?  What serves as a buffer in the extracellular space?
Definition

Phosphate is the major one; histidine is the minor.

 

Outside the cell, the bicarbonate/carbonic acid system maintains pH. 

Term
What are the first two laws of thermodynamics?
Definition
  1. Energy is never created nor destroyed.
  2. The entropy (ΔS) in the universe is always increasing.
Term
Doesn't the creation of a protein break the laws of thermodynamics?  Why/why not?
Definition
Because while stringing amino acids together decreases entropy, we rationalize it by saying that there's the release of energy in the form of (highly entropic) heat energy.
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