Term
T/F: Oxidation and reduction reactions always occur simultaneously. |
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Definition
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Term
T/F: Even with a negative ^G a reaction may take years to proceed due to a high activation energy. |
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Definition
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Term
T/F: In an intermediate transition state, the free energy is less than that of either the reactants or products. |
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Definition
False: "If you look at the energy diagram the transition state is higher on the curve and therefore the free energy is more." |
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Term
T/F: The energy required by a human cell to grow and reproduce is provided by its anabolic metabolism. |
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Definition
False: it's *catabolic* metabolism (cata- = breaking down to release NRG; ana- = using that energy to build up). |
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Term
How do atoms form covalent bonds? |
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Definition
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Term
How do atoms form ionic bonds? |
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Definition
By transferring electrons from one atom to another. |
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Term
What's the concentration of OH- ions in something with pH 12? |
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Definition
[OH-] = 10^-2 M. ([OH-] = 10^(14 - pH) |
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Term
Why is there a dipole moment in water? |
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Definition
Because O has a higher electronegativity than H. |
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Term
Life is thermodynamically possible because living things: * reproduce themselves. * release heat to the environment. * increase the degree of order in the universe. * can carry out a chain of reactions that is energetically unfavorable. * carry out energetically favorable reactions only. |
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Definition
Life is thermodynamically possible because living things: * release heat to the environment. |
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Term
Properties of water that render it so suited to its role as a medium of life include all EXCEPT: * Unrivaled ability to form hydrogen bonds. * Unparalleled ability to orient around nonpolar solutes to promote hydrophobic interactions. * Unusually high dielectric constant of water explains water’s ability to surround ions and increase the ions’ attraction for one another. * The small, but significant, tendency to form H+ and OH- ions. * None, all are true. |
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Definition
Properties of water that render it so suited to its role as a medium of life include all EXCEPT: * Unusually high dielectric constant of water explains water’s ability to surround ions and increase the ions’ attraction for one another. |
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Term
Which of the following statements about enzymes is correct? * An enzyme can bind to many structurally unrelated substrates. * Catalysis of an energetically unfavorable reaction by an enzyme will enable that reaction to occur. * An enzyme can direct a molecule along a particular reaction pathway. * An enzyme can catalyze many chemically different reactions. * Enzymes are permanently altered after catalyzing a reaction. |
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Definition
Which of the following statements about enzymes is correct? * Catalysis of an energetically unfavorable reaction by an enzyme will enable that reaction to occur.
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Term
Which of the following is NOT a crucial benefit of using enzymes to catalyze biological reactions? * Enzymes are highly selective in which reactions they catalyze. * Enzymes change the equilibrium of a reaction to make it more favorable.
* Enzymes can drive an unfavorable reaction by coupling it to a favorable reaction, either directly or via activated carrier molecules. * Enzymes make reactions occur faster than without catalysis. * The activity of enzymes can be modulated by inhibitors and other small molecules to respond to the needs of the cell at each moment. |
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Definition
Which of the following is NOT a crucial benefit of using enzymes to catalyze biological reactions? * Enzymes change the equilibrium of a reaction to make it more favorable. |
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Term
All of the following statements are true about the relationships between [S], Km and Vmax EXCEPT: * As the [S] is increased, v approaches the limiting value, Vmax. * Km = [S] at Vmax/2. * The rate of the reaction, v, follows a first order rate equation v = K’ [A] and K’ = Vmax/Km. * The rate of product formed, v, is at Vmax when [S] < Km. * Km and Vmax assist in finding the rate of the enzyme catalyzed reaction only if the reaction is irreversible.
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Definition
All of the following statements are true about the relationships between [S], Km and Vmax EXCEPT: * The rate of product formed, v, is at Vmax when [S] < Km. |
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Term
All of the following statements about noncompetitive inhibition are true EXCEPT: * The inhibitor binds to a different site than does the substrate. * They interact with the enzyme as well as the enzyme-substrate complex.
* Increasing the concentration of [S] can overcome the inhibition. * The Vmax value does not remain the same as for a reaction that is not inhibited. * The inhibitor can cause a conformational change in the enzyme. |
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Definition
All of the following statements about noncompetitive inhibition are true EXCEPT: * Increasing the concentration of [S] can overcome the inhibition. |
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Term
A common means of providing energy to an energetically unfavorable reaction in a cell is by: * coupling of ATP hydrolysis to the reaction. * transfer of a phosphate group from the substrate to ADP. * generation of a higher temperature by the cell. * enzyme catalysis of the reaction. * coupling of the synthesis of ATP to the reaction.
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Definition
A common means of providing energy to an energetically unfavorable reaction in a cell is by: * coupling of ATP hydrolysis to the reaction. |
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Term
Name the termini of: a) proteins b) nucleic acids
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Definition
a) N-terminus and C-terminus (referring to the amine and the carboxylic acid group, respectively) b) 5' and 3' (referring to the numbered C-atom in the ribose) |
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Term
T/F: Sugar molecules contain information vital for cell development and survival. |
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Definition
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Term
Name the four major families of small organic molecules in cells. |
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Definition
- sugars
- fatty acids
- amino acids
- nucleotides
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Term
What's the general formula for monosaccharides? |
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Definition
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Term
Name and describe the reaction that links two sugar molecules together. |
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Definition
A condensation reaction between two hydroxy groups, where a molecule of water is expelled to form an R-O-R bond. |
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Term
Fun fact: what forms plant cell walls? |
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Definition
chitin. it's a polysaccharide of glucose. |
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Term
T/F: Living cells only produce D-forms of proteins. |
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Definition
False. Living cells only produce L-form proteins. |
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Term
What are the four types of noncovalent bonds important to protein folding? |
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Definition
- hydrogen bonding
(*--H-*, where * is N, O, or F)
- van der Waal's interactions
(Nonspecific and are caused by transient dipoles in all atoms. Momentary random fluctuations in the distribution of the electrons of any atom give rise to a transient unequal distribution of electrons/dipole.)
- ionic bonding
- hydrophobic interactions
(where water forces hydrophobic groups together to minimize their disruptive effect on the H-bonded network of water molecules).
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Term
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Definition
A hydrogen atom covalently bonded to a donor atom (D) may form an additional hydrogen bond as a weak association with an acceptor atom (A). D must be electronegative and thus the covalent D-H bond must be polar. A must be electronegative and its outer shell must have at least one nonbonding pair of electrons that attracts the δ+ charge of the hydrogen atom. Classic example is water; standard h-bonding atoms include N, O, F |
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Term
Why are noncovalent bonds vital for enzymes? |
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Definition
With regard to their substrates, multiple noncovalent interactions can make binding sites very specific. And, obvs., all proteins need noncovalent bonds to fold into a 3D shape. |
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Term
T/F: Proteins have all the information they need to fold up properly. |
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Definition
True. They have all the information and structure to fold up correctly, but they sometimes need a molecular chaperone to keep them sequestered from making noncovalent bonds with atoms in their environment. |
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Term
How is life predicated on the phenomenon of noncovalent bonds? |
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Definition
Noncovalent bonds can break and reform, which allows for regulation of life processes. If the only sort of bonding were covalent, the cell would be paralyzed! |
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Term
T/F: Water can make 4 H-bonds per molecule. |
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Definition
Totally true, you guys. - The O atom can make 2 H-bonds.
- Each H atom can make 1 H-bond.
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Term
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Definition
Water solvates ions. Because of its polar properties, water can interact or dissolve other polar compounds and compounds that ionize (electrolytes). Water's O- aligns with the cations of an electrolyte and its H+ orients towards the anions. |
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Term
________ molecules have both polar and nonpolar groups (are both hydrophilic and hydrophobic). |
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Definition
amphipathic (alt: amphiphilic) |
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Term
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Definition
In water, a micelle is a cluster of amphipathic molecules, with the hydrophilic sections pointing outward, and the hydrophobic sections sequestered in the center These often form colloid. |
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Term
Multi-part: What is a colligative property? Name 4 colligative properties of water that change when a solute is dissolved in it. |
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Definition
A property of solutions that depends on the quantity of molecules of solute, but not on their chemical nature. In water, solutes impose local order so that lattices/crystals can't form in water, nor can bonds be broken as easily. - Freezing point depression
- Boiling point elevation
- Vapor pressure lowering
- Osmotic pressure effects
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Term
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Definition
Osmotic pressure results from water seeping through a semi-permeable membrane, from a solution with a low [solute], to go dilute a solution with a high [solute]. This impulse results in pressure. |
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Term
If the pH of a solution is 4, what is its pOH? |
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Definition
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Term
Define: strong electrolyte |
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Definition
A substance that (almost) completely dissociates in solution. ex.: HCl, NaOH |
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Term
What are the Arrhenius definition of acids and bases? |
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Definition
Substances that, in water, dissociate to yield H+ and OH- ions, respectively. |
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Term
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Definition
the pH when half of a certain molecule is dissolved/dissociated in solution, and when half is neutral/nondissociated. |
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Term
Using the Homosexual-Hasselhoff equation, determine the pH of phenol in solution (pKa = 10), where the concentration of PhOH is 2M and [PhO-] is 0.5M. |
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Definition
pH = pKa + log [A-]/[HA] pH = 10 + log (.5/2) pH = 9.4 |
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Term
Why are buffers so important in cells? |
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Definition
Because if the pH were to depart from the pKa by even half a point, the dissociation ratio of molecules changes from 50/50 to 90/10 (or more), and cell processes would get all fucked up. |
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Term
What is the major and minor buffering agents inside the cell? What serves as a buffer in the extracellular space? |
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Definition
Phosphate is the major one; histidine is the minor. Outside the cell, the bicarbonate/carbonic acid system maintains pH. |
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Term
What are the first two laws of thermodynamics? |
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Definition
- Energy is never created nor destroyed.
- The entropy (ΔS) in the universe is always increasing.
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Term
Doesn't the creation of a protein break the laws of thermodynamics? Why/why not? |
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Definition
Because while stringing amino acids together decreases entropy, we rationalize it by saying that there's the release of energy in the form of (highly entropic) heat energy. |
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