Term
What happens when RTK phosphorylates GAP? |
|
Definition
Helps inactivate signal pathways |
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Term
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Definition
Needs to be dimerized, via ligand mediated (connects 2) or a ligand forces a shape change |
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Term
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Definition
the head group on PI (membrane lipid) |
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Term
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Definition
A guanine nucleotide exchange factor |
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Term
What 2 things can Ca-Calmodulin do? |
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Definition
Can do its "things" and it is an alternate route for PKC |
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Term
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Definition
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Term
Flow to Ca-Calmodulin from PLCbeta |
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Definition
PLCbeta-> IP3 -> Ca++ -> Ca-Calmodulin (Ca-Calmod can activate PKC) |
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Term
Flow from PK(A B or C) from PLCbeta |
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Definition
PLCbeta -> DAG <-> PKC
(DAG is a receptor that activates PKC) |
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Term
Flow to PK(A B or C) from Adenylate cyclase |
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Definition
Adenylate Cyclase -> cAMP -> PKA |
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Term
What effectors are associated with activated G-proteins? |
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Definition
Adenylate cyclase and PLCbeta |
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|
Term
How is a g-protein activated? |
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Definition
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|
Term
When will a g protein bind to GPCR |
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Definition
After a ligand has bound to the GPCR (it increases g protein affinity) |
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Term
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Definition
Contains glucose receptors, but is inhibited by AS160 |
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Term
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Definition
It inhibits glut 4 from going to the PM |
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Term
Step to glucose intake after PI-3K is activated? |
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Definition
PIP3 gets activated, activates PKB, and that inactivates AS160, allowing glut 4 to bring receptors to the PM |
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Term
What gets phosphorylated after insulin binds to RTK |
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Definition
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Term
What hormone binds to what receptor if blood glucose is high? |
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Definition
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|
Term
What hormone binds to what receptor if blood glucose is low? |
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Definition
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|
Term
What happens after RTK dimerizes? |
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Definition
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|
Term
What happens after RTK dimerizes? |
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Definition
It phosphorylates itself? |
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Term
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Definition
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Term
What happens after SOS gets phosphorylated? |
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Definition
Activates the g protein: Ras-GTP ... then that activates MAPKKK -> MAPKK -> MAPK |
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Term
How does SOS get phosphorylated? |
|
Definition
An adapter connects it to an activated RTK |
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Term
What happens after PLCgamma gets phosphorylated by RTK |
|
Definition
Gnerate either IP3 or DAG |
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Term
What happens after PI-3K gets phosphorylated by RTK |
|
Definition
goes to PIP3 ->-> then PKB |
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Term
Where does the addition of flagella/cillia happen? |
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Definition
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|
Term
Where do flagella or cilia start growing from? |
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Definition
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Term
Which side of the core of the flagella is at the plasma membrane? (+ or -) |
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Definition
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|
Term
How does flagellar/ciliar movement happen? |
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Definition
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|
Term
How are doublets attached to central pairs? |
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Definition
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Term
What does a 9+2 array consist of? |
|
Definition
9 MT doublets (13+ additional 11 second ring) and 2 central pairs |
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|
Term
What is an axoneme made of? |
|
Definition
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|
Term
What is the core of flagellum |
|
Definition
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|
Term
How does PKB become activated? (not steps) |
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Definition
It binds to PIP3 to activate |
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Term
What are the steps in glucose exocytosis after glucogen activates the GPCR (thus activating g protein) |
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Definition
Adenylate cyclase gets activated, then caMP activates PKA leading to glycogen breakdown, then glucose freely leaves the cell |
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Term
What happens after glucagon binds to GPCR |
|
Definition
a g protein gets activated |
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Term
What are building blocks of MTs? |
|
Definition
(alpha and beta) as a set |
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|
Term
Why dont MT's slide past eachother? |
|
Definition
linkages and anchors, this is in reponse to dynine walking instead the flagellum bends |
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Term
|
Definition
Coordinate activities of cells in order to react to environment |
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Term
Three things needed for cell signaling |
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Definition
Signal
Receptor
Signal transduction |
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Term
Basic types of cell signaling |
|
Definition
Autocrine
Contact dependent
Paracrine
Endocrine
Synaptic |
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|
Term
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Definition
Secreting cell produces signal and responds to the signal
"cell talks to itself" |
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Term
|
Definition
Signal is membrane bound on one cell an receptor is membrane bound on another cell |
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|
Term
|
Definition
Signaling cell and responding cell are fairly close together
Signal may be unstable, degraded, or doesn't diffuse very far |
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Term
|
Definition
Signal can travel very far in the blood stream |
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Term
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Definition
|
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Term
|
Definition
- Amino acids and derivatives
- Nerotransmitter (ACh)
- Hormones
- Eicosanoids
- Protein/ polypeptides |
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Term
|
Definition
- G-protein coupled receptors
- Receptor Protein Tyrosine Kinase
- Ligand Gated Channels
- Steroid Hormone Receptor |
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|
Term
Basic topology of G-Protein Coupled Receptor |
|
Definition
- Amino (NH2) group in ECF, Carboxyl (COOH) group in cytosol
- Ligand binds ECF side, G-Protein binds on Cytosolic side
- Crosses membrane 7 times |
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|
Term
G-Protein is associated with what leaflet? How does it link to it? |
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Definition
Cytosolic leaflet, covalently linked to membrane lipid |
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Term
|
Definition
Heterotrimeric (3 subunits)
Alpha, Beta, and Gamma
Alpha and Gamma link to membrane lipids |
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Term
When is alpha (g protein) on? |
|
Definition
When GTP is bound and receptor + ligand is bound |
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|
Term
when is alpha (g protein) off? |
|
Definition
when it is hydrolyzed to GDP |
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|
Term
How do you turn off a signal (to prevent over stimulation) |
|
Definition
In the cytoplasmic domain:
- Receptor becomes phosphorylated (g-protein coupled receptor kinase)
Arrestins bind to phosphorylated receptor
- prevents G-protein binding
- Arrestins can also bind to clathrin (endocytose the receptors) bring to lysosome for degredation, or dephosphorylate the receptors and send back to the PM (recycle) |
|
|
Term
What is arrestin and what does it do |
|
Definition
binds to phosphorylated receptors to prevent G-protein binding and also to clathrin if it wants, and brings the receptors to lysosomes for degredation or recycle |
|
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Term
|
Definition
Intercellular signal molecules |
|
|
Term
|
Definition
cAMP
Ca++
Phospholipid derivatives - IP3, DAG, PIP3 (cytoplasmic leaflet can modify) |
|
|
Term
|
Definition
IP3 and DAG, these are (sometimes) produced by phospholipase cBeta (PLcB)
-Peripheral membrane protein
-Activated by activated G protein "effectors" |
|
|
Term
|
Definition
Phosphotidyl Inositol (PI) ->
-> kinase (kinases phosphorylate)
-> PIP2 (Original phospholipid with 2 phos added)
FROM HERE GOES TO EITHER
-> IP3
-----OR-----
-> DAG |
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|
Term
|
Definition
2nd messenger free in cytosol
- Activates Ca++ in the smooth ER |
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|
Term
|
Definition
2nd messenger found in membrane
Diacyl Glycerol (lipids + glycerol)
_________________________
- Docking site for additional signaling molecules
^ KNOW DIS ^ |
|
|
Term
|
Definition
Similar to DAg, stays in membrane site were proteins are associated to. |
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|
Term
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Definition
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|
Term
Where is Ca++ stored and how does it get out? |
|
Definition
Ca++ is stored in the ER lumen and when IP3 binds with its receptors (on the smooth ER) it opens Ca++ channels |
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|
Term
Is Ca++ considered a messenger? |
|
Definition
Yes very much so you donkey kong |
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|
Term
DAG is a docking protein for what? |
|
Definition
Activating protein kinase C |
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|
Term
Ligand mediated dimerization |
|
Definition
Ligand forms a bridge connecting two receptor proteins
(binds monomers together)
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|
Term
Receptor mediated dimerization |
|
Definition
Lingand binds -> receptor changes conformation -> dimer |
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|
Term
Why can ligand-mediated dimerization and receptor-mediated dimerization phosphorylate eachother after becoming a dimer? |
|
Definition
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|
Term
PIP3 is also a docking site for what? |
|
Definition
|
|
Term
|
Definition
An adaptor protein that connects SOS to a receptor |
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|
Term
GDP-Ras = ???
GTP-Ras = ??? |
|
Definition
GDP-Ras = Off
GTP-Ras = On
GEF and GAP recs both |
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|
Term
Ras-MAP kinase pathway is what? |
|
Definition
Highly conserved, found in all eukaryotes, and expressed throughout development
Outcome is different in different tissues, same receptor can respond to differently to different signals |
|
|
Term
How can same receptors respond differently to different signals? |
|
Definition
A) Differences in signal intensity - also signal duration
B) Differences in downstream pathway
Examples:
RTK -> PLCgamma -> IP3 + DAG
RTK -> PI-3K -> PIP3
RTK -> Ras -> MAPkinase |
|
|
Term
How to downregulate signal pathways? |
|
Definition
GPCRs
RTKs
GTP hydrolysis
Endocytosis |
|
|
Term
|
Definition
Binding of arrestin to phosphorylated receptor |
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|
Term
|
Definition
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|
Term
GTP hyrolysis how down regulate |
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Definition
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|
Term
Endocytosis how down regulate |
|
Definition
Degredation of signal and receptor in lysosomes, can recycle the receptor (send from golgi back to plasma membrane for now) |
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|
Term
Hormones used to maintain appropriate blood glucose levels |
|
Definition
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|
Term
What to do when blood glucose levels drop |
|
Definition
- Increase secretion of glucogen from cels of pancrease
- Glucogen binds to receptor livercells and G-protein coupled receptors |
|
|
Term
|
Definition
|
|
Term
What happens when glucose levels are high? |
|
Definition
A) beta pancratic cells secrete insulin (stored on secretory granules)
B) Insulin receptors (muscle and liver) do their things |
|
|
Term
How do beta pancratic cells secrete insulin? |
|
Definition
a Ca++ influx activates secretory granules that fuse with the plasma membrane |
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|
Term
How do insulin receptors help when blood glucose levels are high? |
|
Definition
Receptor tyrosin kinase, insulin dimerizes the receptor -> activate MAP kinase cascade -> altered gene expression -> PI-3K -> PDK (phosphinositide dependent kinase) binds on PIP3 site on membrane -> phosphokinase B (PkB) activates target protein -> increase inport of glucose into muscle + liver cells (from blood) |
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|
Term
Why do get increased import of glucose? |
|
Definition
Glucose transmitter (glut4) is in membrane of vesicle in the cytosol
Stay in cytosol because of protein AS160
Phosphokinase B phosphorylates AS160 and that inactivates it, allowing vesicle to fuse with PM and glucose xporters remove glucose from blood to cell |
|
|
Term
|
Definition
Inhibitory protein that prevents vesicle (containing glucose xmitter glut4) to move to the PM
Phospholinase B phosphorylates it, thus inactivating it |
|
|
Term
Why does glycogen syntherase need to be activated? |
|
Definition
To store the glucose coming in |
|
|
Term
|
Definition
Glycogen synthase phosphorylated and inactivated by GSK-3 |
|
|
Term
|
Definition
Phosphorylate GSK-3 -> inactivated -> glucose synthesis can begin |
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|
Term
|
Definition
Moves transporters to plasma membrane
Stimulate glycogen synthesis |
|
|
Term
Pathways for controlled transcription |
|
Definition
GPCR -> cAMP -> PkA -> cAMP response element CRE
RTK -> RAS -> MAP kinases -> Transcription factors
RTK -> PI-3K -> PIP3 -> PKB -> Phosphorylate and inactivates transcription for apoptosis |
|
|
Term
|
Definition
Program cell death
Can be stopped when PKB phosphorylates and inactivates transcription for it |
|
|
Term
|
Definition
A calcium binding protein |
|
|
Term
What does Ca++/Calmodulin activate? |
|
Definition
Protein kinases -> activate transcription factors
Protein phosphates
Enzymes -> myosin light chain kinase
Enzymes again -> cAMP phosphodiesterase (degrades cAMP) - turns of signal cascade |
|
|
Term
|
Definition
- Structure and support of cell
- Intracellular transport
- Contractility/motility
- Spatial organization |
|
|
Term
3 Basic types of cytoskeleton elements |
|
Definition
- Microtubules
- Microfilaments
- Intermediate filaments |
|
|
Term
|
Definition
- Funct: all cytoskele
- Diameter: largest 25nm
- Subunit: alpha + beta tubulin dimer
- Polarity: polar
- growth site: at + end (beta) |
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|
Term
|
Definition
- Funct: Motility, contractility, cell shape
- Dimensions: smallest 8nm
- Subunits: Actin
- Polarity: Yes polar
- Growth Site: At + End (barbed) |
|
|
Term
Intermediate filaments on table |
|
Definition
- Funct: Structural support
- Dimensions: middle ~10nm
- Subunits: various proteins
- Polarity: no not polar
- Growth site: internal
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|
|
Term
|
Definition
Intracellular tracks
Spindle fibers
Make up flagella, cilia |
|
|
Term
A tube of microtubules is made from what? |
|
Definition
|
|
Term
|
Definition
Makes up a tubule, consists of alphabeta subunits, with alpha head on one end and beta head on other (POLAR) |
|
|
Term
Microtubule sub units
alpha = ?
beta = ? |
|
Definition
Alpha = - end
Beta = + end |
|
|
Term
Where does addition occur in microtubules? |
|
Definition
|
|
Term
|
Definition
Microtubule asociate proteins
|
|
|
Term
Microtubule Associate Proteins |
|
Definition
MAPs
- (might) increase stability
- promote assembly/disassembly of microtubles |
|
|
Term
Motor proteins associated with microtubules (MT) |
|
Definition
Move in a stepwise fashion towards one direction (alpha or beta)
Kinesin - move toward + (beta)
Dynein - move toward - (alpha) |
|
|
Term
|
Definition
Motor protein that moves toward beta direction
|
|
|
Term
|
Definition
Motor protein moves toward (-) alpha end |
|
|
Term
Which MT motor protein moves toward Plasma membrane? |
|
Definition
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|
Term
What MT motor protein moves away vesicles away from PM towards cell's interior? |
|
Definition
|
|
Term
Size and speed of step in Kinesin? |
|
Definition
Equivalent to an alpha beta dimer, more ATP = faster movement |
|
|
Term
|
Definition
Tetramer
2 heavy chains
2 light chains
ATP binding + binding to microtubule at "feet"
Cargo at head |
|
|
Term
|
Definition
2 heavy chains + a variety of intermediate and light chains
Multimeric
Cargo at head
|
|
|
Term
|
Definition
Microtubules organizing center, aids in growth of MT |
|
|
Term
|
Definition
Contrains centrioles, 9 triplets of MTs
MTs are anchored in this area by (- , alpha) ends addition of alph bet dimers is to plus end |
|
|
Term
What is gamma tubulin and where is it found? |
|
Definition
gamma tubulin is found in centrosomes ( ONLY AT THE MTOC) and binds to alpha subunit, rings of gamma tubulin are nucleation sites for MT assembly |
|
|
Term
What MT subunits bind to GTP? |
|
Definition
|
|
Term
GTP on alpha ______ be hydrolized to GDP
GTP on beta ______ be hydrolized to GDP |
|
Definition
GTP on alpha cannot
GTP on beta can |
|
|
Term
What does MT assembly require? |
|
Definition
|
|
Term
When does hydrolysis of GTP on beta occur? |
|
Definition
|
|
Term
What do you get under conditions favoring assembly on MT's |
|
Definition
a GTP cap on the +(beta) end |
|
|
Term
|
Definition
If you don't have end buried you assemble at cap and and disassemble at start end, remains the same size but keeps going |
|
|
Term
|
Definition
Astral
Kinetochore
Polar (overlapping) |
|
|
Term
When a centrosome duplicates (2 spindle poles) what happens? |
|
Definition
It has an increased dynamic instability, causing rapid polymerizing and deployment |
|
|
Term
|
Definition
Are multimeric, bind 2 MTs |
|
|
Term
(-) directed motor proteins do what? |
|
Definition
Organize MT so (-) ends are clustered at poles |
|
|
Term
(+) directed motor proteins do what? |
|
Definition
Act on overlapping MT
- Push poles apart
(act on astral MT)
-Pulls poles apart |
|
|
Term
(-) directed motor proteins are related to what? |
|
Definition
|
|
Term
(+) directed motor proteins are related to what? |
|
Definition
|
|
Term
Centrsomes contain gamma tubulin and this only binds to what? |
|
Definition
|
|
Term
What are rings of gamma tubulin? |
|
Definition
nucleation sites for MT assembly |
|
|
Term
Where is the only place to find gamma tubulin? |
|
Definition
|
|
Term
|
Definition
No ribosomes
Site for budding off vesicles
Synthesis of phospholipids and synthesis of cholesterol
|
|
|
Term
|
Definition
Bound ribosomes (cytosolic side)
Integration of transmembrane proteins
Receives proteins to be secreted
ER-Lumen specific proteins
|
|
|
Term
How are all ribosomes born? |
|
Definition
|
|
Term
|
Definition
differ only in terms of the mRNA (messenger RNA) they are translating
|
|
|
Term
SRP
signal recog particle |
|
Definition
Binds to signal sequence and ER membrane docking protein
Used to get protein into ER lumen
And causes it to be a bound ribosome |
|
|
Term
|
Definition
ribosome binds mRNA
Xlation starts
bind SRP
dock on SRP receptor on ER
enter signal
disassociate from SRP receptor
cleave signal
|
|
|
Term
|
Definition
transfers small chains of sugars and move proteins from
Dolichol to asparagine |
|
|