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bio exam 2
ch. 5 mostly
104
Biology
Undergraduate 2
11/21/2011

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Term
what is the basic ratio of carbohydrates?
Definition
CH2O
Term
glucose formula
Definition
C6H12O6
Term
another word for carbohydrates
Definition
sugars
Term
C=O 
Definition
carbonyl group
Term
[image]
Definition
glucose
Term
recognizable by carbonyl group (C=O) and hydroxyl groups (-OH)
Definition
carbohydrates / sugars
Term
dissacharide form of glucose
Definition
maltose
Term
glucose-fructose disaccharide
Definition
fructose (table sugar)
Term
what causes lactose intolerance?
Definition
a deficiency in the enzyme that breaks down lactose into monosaccharides; so it stays in disaccharide form and can't be broken down by the system.
Term
most important polysaccharides (3)
Definition
glycogen; starch; cellulose
Term
what is the animal storage form of glucose?
Definition
glycogen
Term
high glucose level response:
Definition

- pancreas secretes insulin

- insulin converts glucose into glycogen

Term
what is the most important place where you will find glycogen in the body?
Definition
the liver
Term
what happens when there is a shortage of glucose in the body?
Definition
pancreas secretes a hormone that breaks down glycogen into glucose
Term
why is glucose stored as glycogen, a disaccharide?
Definition
partially because it's easier to pack together than in monosaccharide form
Term
what is the storage form of glucose in plants?
Definition
starch
Term
what is the structural difference between glycogen and starch?
Definition
starch is linearly structured, whereas glycogen branches more.
Term
what are two uses for polysaccharides? categorize: glycogen, starch, cellulose
Definition
energy storage form (glycogen and starch); structural building materials (cellulose)
Term
polysaccharide that animals cannot digest
Definition
cellulose
Term
what are the contents of the human stool?
Definition

- water

- bacteria 

- indigestible molecules, like cellulose

Term
what happens when an animal ingests cellulose?
Definition
it can't be digested, so it is eliminated in the stool.
Term
why is cellulose necessary in an animal diet?
Definition
it's important to eat things that can't be digested (like cellulose, which is a form of fiber) because it gives the stool bulk/substance
Term
biologically important lipids (3)
Definition
triglycerides, phospholipids, steroids
Term
[image]
Definition
glycerol
Term
describe: glycerol
Definition
three-carbon molecule with OH (hydroxyl) and H groups
Term
what are the two components of trigylcerides?
Definition

1) glycerol

2) three fatty acids

Term
how many carbon atoms are usually in a fatty acid?
Definition
16 OR 18
Term
why are fatty acids called fatty ACIDS?
Definition
the carboxyl group at the end
Term
what is the reason most trigylcerides are nonpolar?
Definition
the nonpolar C-H bonds
Term
structure: fatty acid
Definition
long C atom chain, each C having either 1 or 2 H attached; and a carboxyl group (OH-C=O) at the end
Term
[image]
Definition
fatty acid
Term
animal fats tend to be _________; plant fats tend to be __________;
Definition
animal fats tend to be SOLID; plant fats tend to be LIQUID (oils)
Term
http://biology.unm.edu/ccouncil/Biology_124/Images/triglyceride.bmp
Definition
triglyceride
Term
what is the difference between saturated and unsaturated fatty acids?
Definition

saturated: mostly occur in animals; all carbon bonds are single (C-C) and therefore there are two H for each C (H-C-H).

unsaturated: mostly occur in plants; some carbon bonds are double (C=C) and therefore the C have only one H attached (H-C=C-H)

Term
what form do unsaturated fatty acids take, and why?
Definition
liquids; because they have some C=C bonds they don't pack together as well, so their packed form is less dense - liquid!
Term
which biomolecule group has the most internal diversity?
Definition
lipids
Term
what is the process used to convert an unsaturated fatty acid into a saturated fatty acid?
Definition
hydrogenation
Term
how does hydrogenation work?
Definition
breaks the C=C double bonds and makes them C-C single bonds; H come up and fill the empty spots
Term
aside from saturated fats, what can hydrogenation produce?
Definition
unsaturated trans fats
Term
what is the difference between a cis fatty acid and a trans fatty acid?
Definition

cis fatty acids: all the H are on the same side

trans fatty acid: H are on opposite sides of a C=C double bond

Term
triglycerides are primarily __________ (molecule)
Definition
HYDROCARBONS
Term
what are the structural parts of a phospholipid? (3)
Definition
polar (hydrophilic) phosphate group and two nonpolar (hydrophobic) fatty acids attached to a glycerol backbone
Term
amphipathic molecule
Definition
partially charged and partially neutrally charged molecule; i.e. parts are hydrophobic and parts are hydrophilic -- like a phospholipid
Term
what sort of molecule do you need to let a fat be absorbed in a watery environment?
Definition
amphipathic molecule
Term
phospholipid bilayer
Definition
the double phospholipid (phosphate group - fatty acid - fatty acid - phosphate group) layer that makes up the cell membrane
Term
steroid structure
Definition
four fused hydrocarbon rings; all derived from cholesterol
Term
what is the parent molecule of all steroids?
Definition
cholesterol
Term
examples of steroids
Definition
estrogen, testosterone, progesterone, vitamin D
Term
[image]
Definition
phospholipid
Term
enzymes are __________, which means they assist and speed up chemical reactions without being consumed.
Definition
CATALYSTS
Term
what are the body's catalysts?
Definition
enzymes
Term
taysach's disease is caused by what?
Definition
enzyme deficiency -- reactions in the body simply happen too slowly.
Term
describe the carboxyl group, it's nature, and explain.
Definition
OH-C=O (and another bond to something else)
- it makes a particle an acid, because when it undergoes dehydration synthesis, it lets go of the H in the form of an H+ ion.
Term
define: functional group
Definition
a small molecule that gets attached to another one (and imparts upon it certain qualities). 
Term

what is the significance of attaching an hydroxl group (-OH) to a molecule?

 

Definition
-OH is a polar molecule, so it makes the host molecule polar as well -- and therefore water soluble (example: glucose)
Term
what is the opposite of dehydration synthesis?
Definition
hydrolysis
Term
what are the monomers for proteins?
Definition
amino acids
Term

monosaccharides : polysaccharides

 

amino acids : ?

Definition
amino acids : proteins
Term
describe the structure of an amino acid
Definition

central C with four attachments:

1) hydrogen

2) carboxyl group -- can serve as an acid by releasing H+

3) amino group -- can serve as a base by being converted to NH3

4) R-group - variable group

Term
what differentiates one protein from another?
Definition
the R-groups (variable groups) in their amino acids
Term
in any given protein, how many different amino acids can there be?
Definition
20
Term
is a protein acidic or basic? explain.
Definition
it can be either, depending on the conditions. the carboxyl group can release an H+ to make it acidic, or the amino group can gain an H+ (to make NH3) and make it basic.
Term
what does it mean that an amino acid is non-essential?
Definition
you don't have to have it in your diet - your body can synthesize it by itself.
Term
what is the enzyme for the carbonic acid/bicarbonate system?
Definition
carbonic anhydrase
Term
how many essential proteins are there?
Definition
eight
Term
what is the result of not including essential amino acids in your diet?
Definition
you'll have an amino acid shortage, and therefore a protein shortage.
Term
what is the name for the molecules enzymes work on?
Definition
substrates
Term
what is the name of the bond between amino acids?
Definition
peptide bonds
Term
how do peptide bonds form?
Definition
dehydration synthesis between one amino acid's amino group and another's carboxyl group -- carbon and nitrogen will connect.
Term
what is the reason you can't take insulin orally?
Definition
insulin is a protein; peptide bonds are destroyed by hydrolysis; hydrolysis takes place during digestion.
Term
how many structural levels to all proteins have?
Definition
three
Term
how many kinds of proteins are there?
Definition
20! (i.e. 20 factorial) -- because there are 20 different R-groups (variable groups) and as such 20 different amino acids; arranging them in different orders will produce different protein primary structure.
Term
what determines the primary structure of proteins?
Definition
their sequence of amino acids (polypeptide)
Term
what determines the secondary and tertiary (and quaternary, if applicable) structure of a protein?
Definition
its polypeptide (amino acid) sequence
Term
what happens structurally when you denature a protein?
Definition
unravel the (quaternary), tertiary, and secondary structures -- it's not only a 2-dimensional polypeptide chain/amino acid sequence
Term
what are two common secondary structures?
Definition
spirals (alpha) and sheets (beta) -- folding over and over itself
Term
what is the cause of sickle-cell anemia?
Definition
change in a protein's primary structure - one amino acid was replaced with one that shouldn't have been there, changing the shape of the cell
Term
what are the four categories of proteins?
Definition

- enzymes

- hormones

- transport proteins

- muscle movement

Term
what is the quaternary structure of hemoglobin?
Definition
four proteins coming together
Term
what are two major kinds of hormones?
Definition

- proteins

- steroids

Term
what are two hormone-secreting glands? (two different functions)
Definition
endocrine glands; exocrine glands
Term
how do transport proteins help lipids travel through the blood?
Definition
lipids are hydrophobic and so need transport proteins to help them move
Term
most naturally occuring fatty acids are: (cis/trans)
Definition
cis!
Term
what effect do trans fatty acids have on HDL and LDL?
Definition
lower HDL (good cholesterol) and raise LDL (bad cholesterol)
Term
what is the monomer of nucleic acid?
Definition
nucleotides
Term
what are the three main parts of nucleic acids?
Definition

- nitrogen-containing base

- five-carbon sugar (monosaccharide)

- phosphate group

Term
what is a nitrogen-containing base?
Definition
molecule with nitrogen and the capacity to reduce [H+] in solution
Term
describe the two kinds of nitrogen-containing base in nucleic acids
Definition

purines - 2 nitrogen-carbon rings

pyrimadines - 1 nitrogen-carbon ring

Term
what are the three pyrimidines?
Definition

CUT-

Cytosine, Uracil, Thymine

Term
what are the two purines?
Definition
adenine and guanine
Term
what is the difference in the two monosaccharides found in nucleic acids?
Definition
ribose has one more Oxygen than deoxyribose
Term
every single nucleotide in DNA has the molecule ____________
Definition
deoxyribose
Term
which nitrogen-containing base does DNA NEVER have?
Definition
uracil!
Term
every single RNA molecule has the monosaccharide __________________
Definition
ribose
Term
what nitrogen-containing base does RNA NEVER have?
Definition
thymine
Term
what are three differences between DNA and RNA?
Definition

- DNA is double stranded while RNA is single stranded

- different available nitrogen-containing bases (DNA has guanine, thymine, cytosine, adenine; RNA has guanine, cytosine, adenine, uracil)

- DNA has deoxyribose monosaccharide and RNA has rybose monosaccharide

Term
what is complimentary base pairing?
Definition
each nitrogen-containing base on a DNA strand only bonds with its specific opposite: A-T and C-G
Term
what part of a DNA nucleotide links along the same strand? what part links to the opposite strand?
Definition
nucleotides are bound along the same strand by their phosphate groups and to the opposite strands between their nitrogen-containing bases
Term
what is the most important functional unit of a chromosome?
Definition
gene
Term
where is DNA located in a cell?
Definition
in the nucleus, in the form of chromosomes (which also contain protein)
Term
define: somatic cell
Definition
any cell that is not a sex cell - contains 23 pairs of chromosomes
Term
what is one gene responsible for?
Definition
the synthesis of one protein
Term
describe ATP
Definition

ATP is a specific nucleotide that is the energy tranfer molecule in the body

- has the ribose monosaccharide

- has the adenine base

- has three phosphates

Term
what defines a carbohydrate?
Definition
carbonyl group and hydroxyl groups
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