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Bio 113
Chapter 2
73
Biology
Undergraduate 1
01/26/2009

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Term
matter
Definition
all tangible materials that occupy space and have mass
Term
atom
Definition
a tiny particle that cannot be subdivided into smaller substances without losing its properties
Term
proton
Definition
subatomic particle with positive charge
Term
neutron
Definition
subatomic particle with a neutral charge
Term
electron
Definition
subatomic particle with a negative charge
Term
element
Definition
has a characteristic atomic structure and predictable chemical behavior
Term
isotopes
Definition
varient forms of the same element that differ in the number of neutrons
Term
orbitals
Definition
electron pathways around nucleus
Term
molecule
Definition
a distinct chemical substance that results from the combination of two or more atoms
Term
compounds
Definition
molecules that are combinations of two or more different elements
Term
chemical bonds
Definition
result when two or more atoms share, donate (lose), or accept (gain) electrons
Term
valence
Definition
the number of electrons in the outermost shell of an element
Term
covalent bonds
Definition
form between atoms that share electrons rather than donating or receiving them
Term
polar
Definition
a molecule with an asymmetrical distribution of charges and has positive and negative poles
Term
nonpolar
Definition
an electrically neutral molecule
Term
ionic bonds
Definition
electrons are transferred completely from on atom to another and are not shared
Term
ionization
Definition
occurs when an ionic bond is broken and atoms dissociate into un attached, charged particles called ions
Term
cations
Definition
positively charged ions
Term
anions
Definition
negatively charged ions
Term
electrolytes
Definition
substances such as salts, acids, and bases that release ions when dissolved in water. their charges enable them to conduct an electrical current
Term
hydrogen bond
Definition
a weak type of bond that forms between a hydrogen covalently bonded to one molecule and an oxygen or nitrogen atom on the same molecule or on a different molecule
Term
van der Waals forces
Definition
weak attractions that occur between molecules that demonstrate low levels of polatiry
Term
reactants
Definition
molecules entering or starting a reaction
Term
products
Definition
substances left by a reaction
Term
catalysts
Definition
substances that increase the rate of a reaction
Term
solution
Definition
a mixture of one or more substances called solutes uniformly dispersed in a dissolving medium called a solvent
Term
hydrated
Definition
when an ion is surrounded by a sphere of water molecules
Term
hydrophilic
Definition
molecules that attract water to their surface (ex. salt, sugar)
Term
hydrophobic
Definition
nonpolar molecules that repel water (ex. benzene)
Term
amphipathic
Definition
molecules that have both hydrophilic and hydrophobic properties (ex. phospholipids in cell membranes)
Term
concentration
Definition
expresses the amount of solute dissolved in a certain amount of solvent
Term
acidic
Definition
a solution where a component dissolved in water (acid) releases excess hydrogen ions (H+)
Term
basic
Definition
a solution where a component releases excess hydroxyl ions (OH-)
Term
pH
Definition
a graduated numerical scale that ranges from the most acidic to the most basic.
Term
neutralization
Definition
reactions involving aqueous solutions containing both acids and bases. gives rise to water and other neutral by-products
Term
inorganic chemicals
Definition
atoms, ions, and small simple substances that play diverse roles in the structure and function of living things. usually inorganic if it does not contain both a carbon and hydrogen
Term
organic chemicals
Definition
carbon compounds with a basic framework of the element carbon bonded to other atoms
Term
functional groups
Definition
special molecular groups or accessory molecules that bind to organic compounds
Term
biochemistry
Definition
all the compounds of life fall into this realm. four catagories: carbohydrates, lipds, proteins, and nucleic acids
Term
macromolecules
Definition
very large compounds
Term
carbohydrate
Definition
originates from the way that most members of this chemical class resemble combinations of carbon and water
Term
saccharide
Definition
sugar
Term
monosaccharide
Definition
a simple polyhydroxy aldehyde or ketone molecule containing from 3 to 7 carbons
Term
disaccharide
Definition
a combination of two monosccharides
Term
polysaccharide
Definition
a polymer of five or more monosaccharides bound in linear or branched chain patterns
Term
glycosidic bonds
Definition
link the subunits of disaccharides and poly saccharides
Term
dehydration synthesis
Definition
a reaction where a water molecule is produced
Term
cellulose
Definition
a long, fibrous polymer. found in the cell walls in plants and many microscopic algae
Term
agar
Definition
an indispensable polysaccharide in preparing solid culture media
Term
glycocalyx
Definition
a "sugar coating" on the outer surface of many cells. composed of polysaccharides bound in various ways to proteins
Term
glycogen
Definition
starch. storage for polysaccharides
Term
hydrolysis
Definition
digestion of glucose molecules. a water molecule is required
Term
lipid
Definition
fat; a variety of substances that are not soluble in polar solvents such as water but will dissolve in nonpolar solvents such as benzene and cholorform
Term
triglycerides
Definition
important storage lipids. (includes fats and oils)
Term
glycerol
Definition
a 3-carbon alcohol with three OH groups that serve as binding sites
Term
phospholipids
Definition
a class of lipds that serves as a major structural component of cell membranes
Term
cholesterol
Definition
a steroid; reinforces the structure of the cell membrane in animal cells and in an unusual group of cell-wall-deficient bacteria.
Term
proteins
Definition
the predominant organic molecules in cells
Term
amino acids
Definition
the building blocks of proteins
Term
peptide bond
Definition
forms between the amino group on one amino acid and the carboxyl group on another amino acid
Term
peptide
Definition
refers to a molecule composed of short chains of amino acids
Term
poly peptide
Definition
contains an unspecified number of amino acids but usually has more than 20 and is often a smaller subunit of a protein
Term
primary structure of protein
Definition
the type, number and order of amino acids in the chain
Term
secondary structure of a protein
Definition
has alpha helix and beta-pleated sheet
Term
tertiary structure of a protein
Definition
has more torsion created by additional bonds between functional groups. ex. covalent disulfide bonds between sulfur atoms on two different parts of the molecule.
Term
quaternary structure of a protein
Definition
more than one polypeptide forms a large, multiunit protein. typical of antibodies and some enzymes that act in cell synthesis.
Term
enzymes
Definition
serve as the catalysts for all chemical reactions in cells, and nearly every reaction requires a different enzyme.
Term
antibodies
Definition
complex glycoproteins with specific regions of attachment for bacteria, viruses, and other microorganisms
Term
DNA
Definition
the master computer of cells; contains a special coded genetic program with detailed and specific instructions for each organisms "heredity"
Term
RNA
Definition
"helper" molecules responsible for carrying out DNA's instructions and translating the DNA program into proteins that can perform life functions
Term
ATP
Definition
a nucleotide; belongs to a category of high-energy compounds that give off energy when the bond is broken
Term
nucleic acids
Definition
DNA and RNA, originally isolated from the cell nucleus
Term
cell
Definition
the fundamental unit of life. the combination of atoms that produces characteristics, reactions and products that can only be described as living
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