Shared Flashcard Set

Details

Bio 112-1
Exam 1 Chapters 1-6
73
Biology
Undergraduate 1
09/22/2012

Additional Biology Flashcards

 


 

Cards

Term
Fundamental traits of living organisms
Definition
Replication, Acquire and use energy, Evolution of populations, membrane-bound cells, genetic information
Term
Cell Theory: Pattern component and process component
Definition

Pattern: All living things are composed of cells

Process: All cells arise from preexisting cells - NOT SPONTANEOUSLY!

Term
Tree of Life
Definition
All species must have come from older, ancestral species. 
Term
Phylogenetic Tree
Definition
Shows relationship between species
(Evolution leads to speciation, or the divergence of species) 
Term
Non-polar Covalent Bonding
Definition
Electrons are shared equally between the two atoms
Term
Polar Covalent Bonds
Definition

The more electronegative atom poses a stronger attraction and the eis closer to that atom.

As a result, the atoms will have partial charges.

Term
Ionic Bonding
Definition
Complete transfer of electrons, resulting in a cation and anion
Term
Why is water such an effective solvent?
Definition
Polar, Hydrogen bonds form between water molecules, polar molecules dissolve readily in water.
Term
Spontaneous Reaction
Definition

Happens with no added input of energy.

Happens when the potential energy of the reactants is higher than the products. Therefore, the reactants will have a lower entropy and the products will have a higher entropy.

Term
Gibbs Free Energy Equation
Definition

ΔG = ΔH -TΔS

 

Term
Endergonic Reaction
Definition
When ΔG is positive, the reaction is endergonic and energy is needed for the reaction
Term
Exergonic Reaction
Definition
When ΔG is negative, the reaction is exergonic and energy is released.
Term
Amino Group
Definition
Acts as a base and attracts a hydrogen atom
Term
Carboxyl Group
Definition
Acts as an acid and donates a hydrogen atom.
Term
Carbonyl Group
Definition
Can form either an aldehyde or a ketone
Term
Hydroxyl Group
Definition
Highly polar, it will make a compound more soluble through hydrogen bonding (Ex. Alcohol)
Term
Phosphate Group
Definition
Breaking these P-O bonds will release large amounts of energy (Ex. ATP, ADP, DNA, RNA)
Term
Sulfhydryl Group
Definition
Can form disulfide bonds in proteins that contribute to their structure
Term
Stanley Miller's origin of life experiment
Definition

Q: Can simple molecules and Kinetic Energy (in the form of heat) lead to chemical evolution?

A: Nonpolar covalent molecules were heated in water, chemical evolution occured and several complex molecules were formed.

Term
Components of Amino Acids
Definition
Amino Group, Side Chain, Carboxyl Group, Central Carbon
Term
Non-polar R-groups (side chains)
Definition
Will not form hydrogen bonds in water, otherwise known as hydrophobia.
Term
Polar R-Groups (side chains)
Definition
Have partial charge and can form hydrogen bonds, otherwise known as hydrophilic. 
Term
Electrically charged R-groups (side chains)
Definition
Amino Group makes it a proton acceptor/donor, which make it a base/acid. Highly polar and soluble in water.
Term
How do amino groups form proteins?
Definition
The carboxyl group and the amino group link up. The OH on the carboxyl group and the H on the animo group fall off and become a water molecule. This is known as a condensation reaction.
Term
Primary Structure
Definition

Sequence of Amino Acids formed by peptide bonds

*Changes in this primary structure affect protein function

Term
Secondary Structure
Definition

Formed by H-bonding btween backbone muscles.

Has α-helix and β-pleated sheet

Term
Tertiary Structure
Definition
Interactions with side-by-side chain, or backbone to side chain.
Term
Van Der Waal Interactions
Definition
Weak ionic bonding
Term
Quaternary Structure
Definition
Created by multiple polypeptides
Term
Enzymes
Definition
Majority of protiens are enzymes. They lower the activation energy so the reaction can occur faster/without needing as much energy
Term
What limits the rate of catalysis?
Definition

As the concentration of the substrate increases, the rate of the reaction increases. Eventually, the rate will plateau at its maximum speed.

 

Term
What two physical factors affect enzyme function?
Definition

Enzymes from different organisms may function best at different temperatures. If the temperature is too low, the reaction will be slower. If it's too high, the protein will be denatured.

The same applies for pH levels.

Term
Competitive inhibition
Definition
Catalysis is stopped when a molecule that is similar in size and shape to a substrate binds to the active site. 
Term
Allosteric Regulation
Definition
When the regulatory molecules bind to a different site on a location other than the active site. This changes the shape of the enzyme and makes it either accesible or inaccesible.
Term
Substrates
Definition
Reactant molecules that bind and react at a specific enzyme's active site.
Term
Induced Fit
Definition
The conformational change that happens when reactant molecules bind to the active site.
Term
Difference between DNA and RNA
Definition

DNA - deoxyribose sugar, phosphate, ATCG nitrogenous base

RNA - ribose sugar, phosphate, AUCG nitrogenous base

Term
Pyrimidines
Definition
Single rings (Cytosine, Thymine, Uracil)
Term
Purines
Definition
Doulbe rings (Guanine and Adenine)
Term
Which two macromolecules have directionality?
Definition
proteins and nucleic acids (DNA/RNA)
Term
DNA
Definition

- In the shape of a double helix with only purine-pyrimidine pairs.

- Is an information-containing molecule.

- Can serve as a template so new, complimentary strands can form.

- Anti-parallel strands.

Term
RNA
Definition

- Single strands form a loop.

- Double strands form a double helix.

- Complimentary pairing can be either with itself or other RNA strands.

- Is both an information containing molecule and a catalytic molecule. Therefore, it can be concluded that the first known life form was made of RNA

Term
Basic Carbohydrate Structure
Definition
(CH2O)n
Term
Monosaccharides
Definition
Simple Sugars - building blocks of the carbohydrates
Term
Difference between aldose and ketose
Definition

aldose - carbonyl group is at the end of the carbon chain

ketose - carbonyl group is in the middle of the carbon chain

Term
Difference between α and β saccharides
Definition

α saccharides - C-OH groups face downward

β saccharides - C-OH groups face upward, a bit more stable than α.

Term
How can simple sugars differ?
Definition

1. Location of carbonyl groups

2. Amount of carbons present

3. Spatial arrangement of atoms (Mainly, the positions of -OH can face up or down)

 

Term
Glycosidic Linkage
Definition

When two monosaccharides join together to form a polysaccharide. This linkage is formed via condensation reaction.

This linkage can vary based on the configuration of the hydroxyl groups (either α or β)

Term
Starch
Definition
Energy storage polysaccharide in plants, entirely α-linkages
Term
Glycogen
Definition
Highly branched energy storage polysaccharide in animals, nearly identical α-linkages as starch.
Term
Cellulose
Definition

A structural polysaccharide used for structural support in cell walls of plants.

Has parallel strands. β linkages cannot be broken down easily, so it acts as a fiber to help with digestion

Term
Chitin
Definition
Strucutral polysaccharide found in fungi and animals. Has β linkages and parallel strands joined by hydrogen bonds.
Term
Peptidoglycan
Definition
Structural polysaccharide found in bacteria. Has β linkages and parallel strands joined by peptide bonds.
Term
Glycoprotein
Definition
Specific types of cells contain specific proteins. These proteins are used as an identification badge.
Term
What do carbohydrates do?
Definition

Structure - Form fibers to give cells strength and elasticity, via the β-1,4-linkages.

Energy Storing - Carbs have high free energy due to their high potential energy (because of their equal electronegative bonds).

Term
Which has more energy, carbohydrates or fatty acids?
Definition
Fatty acids, due to the higher amounts of potential energy from the multiple C-C and C-H bonds
Term
2 Essential functions of cell membranes
Definition

1. Selective barrier (semipermeable membrane)

2. Reactions will be catalyzed due to the increase of concentrations in the cells

Term
2 Components of lipids
Definition
Isoprene (nonpolar) and fatty acids (semi-polar)
Term
3 Types of lipids in cells (list)
Definition
Fats, Membrane lipids, and phospholipids
Term
Fats
Definition

Form via condensation reaction - 1 molecule of glycerol and 3 fatty acids will form an ester linkage, otherwise known as a trigyceride

- Source of energy due to C-H bonds in the fatty acids

- Hydrophobic due to their C-H bonds

Term
Membrane Lipids
Definition

Amphipathic - Polar head, nonpolar tail

Ex) Steroid - nonpolar isoprene chain and 4 steroid rings, Polar R-group

Term
Phospholipid
Definition
Its polar head is comprised of glycerol, phosphate and an additional polar or charged R-group. Its tail is two non-polar fatty acids
Term
2 Types of phospholipid bilayers
Definition

Micelles - Round

Bilayers - stacked

Term
Liposomes
Definition
Artificial membrane-bound vesicles (transporters)
Term
Planar Bilayer
Definition
An artificial membrane used to see which/how rapidly different solutes can cross the membrane
Term
Which solutes can/cannot cross the membrane?
Definition

Oxygen, Carbon dioxide, Nitrogen, (small nonpolar) water and glycerol (small uncharged) can cross the membrane. 

Glucose, Sucrose, (large polar) and ions cannot cross the membrane.

Term
Factors that affect permeability
Definition

Bond saturation - does the carbon maximize its bonds or does it have double bonds/rings?

Hydrocarbon chain length - long, saturated fats affect fluidity and permeability

Cholesterol - The steroid rings are bulky and will increase the density of its hydrophobic section

Temperature - A higher temperature will cause the lipids to become more fluid and increase permeability

Term
Diffusion
Definition
Solutes move from an area of high concentration to an area of low concentration; Will continue until equilibium is established on both sides of the membrane.
Term
Osmosis
Definition
Movement of water molecules in a special case of diffusion (across a semi-permeable membrane)
Term
Concentration Gradient
Definition
Difference in concentrations
Term
Hypertonic Solution
Definition
Solute concentration outside membrane is higher; Water will move out, causing cell shrinkage
Term
Hypotonic Solution
Definition
Solute concentration is higher inside; Water will move in, causing the cell to expand or even burst
Term
Isotonic Solution
Definition
Rate of movements is equal
Supporting users have an ad free experience!