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BIO 1107 Chap 16
Protein Translation
48
Biology
Undergraduate 1
12/02/2024

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Term
TO get from the language of nucleotides to the language of amino acids you have to
Definition
translate
Term
What are prtoeins
Definition
chains of amino acids joined by peptide bonds
Term
What is the genetic code
Definition
all living organisms use the same genetic code to build their proteins
Term
What is a human example of Genetic code
Definition
insulin- we used to use insulin isolated from pigs, but now we put the human gene for insulin in bacteria and the bacteria make tons of it
Term
What is the start codone
Definition
AUG
Term
What are the three stop codons
Definition
  1. UGA
  2. UAA
  3. UAG
Term
If you see a T in the nucleotide, you know it is
Definition
DNA
Term
If you see a U in the nucleotide, you know it is
Definition
RNA
Term
Players in translation
Definition
  1. mRNA- code is read from this
  2. ribosomes- the factories for translation
  3. tRNA
  4. rRNA
Term
What is mRNA in translation
Definition
  • produced by transcription
  • contain codons that are read and fed into that code
  • can have secondary structure that affect stability and how well it can be translated
Term
What are ribosomes in translation
Definition
  • part protein, part RNA complexes that work to decode and catalyze peptide bond synthesis
  • prokaryote- ribosomes are smaller in proteins size and RNA size
  • each ribosome has 3 active sites: P,A,E
Term
What is tRNA in translation
Definition
  • has 3 stem loops (cloverleaf) that interact with each other to form tertiary structure
  • one side is the amino acid bonding site
  • on the other end is the anticodon
  • part of the decoding portion of translation
Term
What is charged tRNA
Definition
when an amino acid is bound
Term
What is uncharged tRNA
Definition
there is no amino acid bound
Term
How is tRNA re-charged
Definition
by the aminoacyl synthase molecule that adds new amino acid onto the end of tRNA
Term
What is rRNA in translation
Definition
  1. scans the incoming messenger RNA for the correct site to start translating
  2. helps for the peptide bonds
Term
What are the three steps in translation
Definition
  1. initiation
  2. elongation
  3. termination
Term
What is initiation in translation
Definition
  • the binding of the small subunit of the ribosomes to the 5' untranslated region (UTR) at the start of the mRNA
  • the small subunit scan until it located the start codon
  • the first tRNA will lock onto the mRNA and the large subunit binds to the small with the first tRNA sitting in the p site
Term
what is the Shine Dalgarno sequence
Definition

a sequence in prokaryotes that are complementary to the r RNA sequence sitting in the small subunit of the ribosome and is directly upstream of the start condone

-the first tRNA plugs into be complementary to that start codon on the SDS

Term
The poly a tail and 5' cap are useful in initiation because
Definition
it helps stabilize the ribosome by the cap binding proteins bind to the cap and extend over the ribosomes, the mRNA loops backwards and the poly A- tails interacts with the cap binding proteins
Term
What is elongation
Definition
where the ribosome moves down the mRNA strand plugging in tRNAs and forming peptide bonds between amino acids
Term
What are the steps of elongation
Definition
  1. A new tRNA hydrogen bonds with the mRNA
  2. a peptide bond is formed between the amino acids that are sitting next to each other and that growing chain is transferred to the tRNA that is sitting in the A site
  3. The ribosomes moves as that the first tRNA is now in the E site, the second tRNA is in the P site and A site is empty
  4. the tRNA in the E site leaves
  5. repeats unto it encounters a stop codon
Term
What is termination is translation
Definition
a stop Condon is encountered, and a release factor binds to the a site, peptide chain is cleaved from tRNA, the ribosome falls apart, peptide leaves and does its function in the cell
Term
after termination, the mRNA
Definition

can be translated all over again

- translation does not even have to be complete before a second or third ribosome begins at the start sire

Term
In prokaryotes, transcription and translation...
Definition
occur in the same place and can perform both process at the same time
Term
What are the regulation points of genes
Definition
  1. how often the gene is even transcribed into RNA- has to be processed correctly
  2. use alternative splicing to produce different mRNA from the same transcript
  3. control the stability of the mRNA- long or short life? how many proteins are made form it?
  4. whether or not the transcription machinery even has access to the gene
  5. there is control over the chromatin and its structures- modifying to make the chromatin open or closed
Term
What is the inheritance of chromatin modifications with impacts on heredity called
Definition
epigenetics
Term
What is X chromosome Inactivation
Definition

females will randomly turn off one of their X's off permanently

- happens when embryo is more than one cell but not that many

-which X is truned off is random in EACH cell (mom vs dad

Term
What is a mutation
Definition
any change in the DNA sequence of a gene
Term
are all mutations bad
Definition

no

- just part of life

Term
What is the rout to evolution and gain of function
Definition
mutation
Term
Where do somatic mutations occur and are they inherited
Definition
  1. somatic tissues (tissue that builds the body)
  2. no inherited
Term
Where do germline mutations occur and are they inherited
Definition

- in reproductive cells

-can be inherited

Term
What is a dominant mutation
Definition
a gain of function
Term
what is a recessive mutation
Definition
the loss of a function
Term
What are the three distinction is Point mutations
Definition
  1. silent mutations
  2. Missense mutaiton
  3. nonsense mutation
Term
what are the two types of mutations
Definition
point mutations and regional mutations
Term
what is a silent mutation
Definition
  1. nucleotide sequence changes however due to redundancy in the genetic code, the amino acid coded for remains the same
  2. have no effect on the protein level and are only really found if someone is sequencing DNA
Term
What is a Missense mutation
Definition

the nucleotide sequence changes does change the amino acid sequence

-causes changes in protein level that will very in severity

 

Term
hat is a nonsense mutation
Definition

the nucleotide sequence changes and goes from coding for an amino acid to a stop codon

- cause the protein to be shorter in length

- how far into the coding sequence will affect how great the effect ison the protein itself

Term
What is a reading frame
Definition

where the ribosomes only read in increments of three nucleotides

- doesn't interpret what it is translating, just plugs in matching tRNA

Term
what is a frameshift
Definition
if you insert or delete in increments that are not divisible by 3
Term
frameshifts can have huge effects because
Definition

it can cause a stop Condon to be introduced early 

- or it can lose a stop condone entirely and the protein continues on for much longer

Term
what is a mutagen
Definition
any chemical that causes mutations efficiently
Term
what are examples of mutagens
Definition
  • pathogenic toxins
  • UV light
  • industrial chemicals
  • x-rays
  • tobacco smoke and nicotine
Term
How does UV create a mutation
Definition

if there are two thymine's next to each other, the UV creates a double bond between them to form a thymidine dimer

- causes distortion of the DNA so when cell tries to replicate DNA, the two thymine's get jumped over causing a frameshift

Term
examples of phenotypes caused by point mutations
Definition
  1. color blindness
  2. cystic fibrosis
  3. sickle cell disease
Term
example of problematic frameshift in humans is an
Definition
indel in the BRCA1 and 2 genes that lead to the development of breast cancer
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