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TO get from the language of nucleotides to the language of amino acids you have to |
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chains of amino acids joined by peptide bonds |
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all living organisms use the same genetic code to build their proteins |
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What is a human example of Genetic code |
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insulin- we used to use insulin isolated from pigs, but now we put the human gene for insulin in bacteria and the bacteria make tons of it |
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What are the three stop codons |
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If you see a T in the nucleotide, you know it is |
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If you see a U in the nucleotide, you know it is |
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- mRNA- code is read from this
- ribosomes- the factories for translation
- tRNA
- rRNA
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What is mRNA in translation |
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- produced by transcription
- contain codons that are read and fed into that code
- can have secondary structure that affect stability and how well it can be translated
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What are ribosomes in translation |
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- part protein, part RNA complexes that work to decode and catalyze peptide bond synthesis
- prokaryote- ribosomes are smaller in proteins size and RNA size
- each ribosome has 3 active sites: P,A,E
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What is tRNA in translation |
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- has 3 stem loops (cloverleaf) that interact with each other to form tertiary structure
- one side is the amino acid bonding site
- on the other end is the anticodon
- part of the decoding portion of translation
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when an amino acid is bound |
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there is no amino acid bound |
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by the aminoacyl synthase molecule that adds new amino acid onto the end of tRNA |
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What is rRNA in translation |
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- scans the incoming messenger RNA for the correct site to start translating
- helps for the peptide bonds
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What are the three steps in translation |
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- initiation
- elongation
- termination
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What is initiation in translation |
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- the binding of the small subunit of the ribosomes to the 5' untranslated region (UTR) at the start of the mRNA
- the small subunit scan until it located the start codon
- the first tRNA will lock onto the mRNA and the large subunit binds to the small with the first tRNA sitting in the p site
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what is the Shine Dalgarno sequence |
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Definition
a sequence in prokaryotes that are complementary to the r RNA sequence sitting in the small subunit of the ribosome and is directly upstream of the start condone
-the first tRNA plugs into be complementary to that start codon on the SDS |
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Term
The poly a tail and 5' cap are useful in initiation because |
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Definition
it helps stabilize the ribosome by the cap binding proteins bind to the cap and extend over the ribosomes, the mRNA loops backwards and the poly A- tails interacts with the cap binding proteins |
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where the ribosome moves down the mRNA strand plugging in tRNAs and forming peptide bonds between amino acids |
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What are the steps of elongation |
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- A new tRNA hydrogen bonds with the mRNA
- a peptide bond is formed between the amino acids that are sitting next to each other and that growing chain is transferred to the tRNA that is sitting in the A site
- The ribosomes moves as that the first tRNA is now in the E site, the second tRNA is in the P site and A site is empty
- the tRNA in the E site leaves
- repeats unto it encounters a stop codon
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What is termination is translation |
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a stop Condon is encountered, and a release factor binds to the a site, peptide chain is cleaved from tRNA, the ribosome falls apart, peptide leaves and does its function in the cell |
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Term
after termination, the mRNA |
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can be translated all over again
- translation does not even have to be complete before a second or third ribosome begins at the start sire |
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In prokaryotes, transcription and translation... |
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occur in the same place and can perform both process at the same time |
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What are the regulation points of genes |
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Definition
- how often the gene is even transcribed into RNA- has to be processed correctly
- use alternative splicing to produce different mRNA from the same transcript
- control the stability of the mRNA- long or short life? how many proteins are made form it?
- whether or not the transcription machinery even has access to the gene
- there is control over the chromatin and its structures- modifying to make the chromatin open or closed
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What is the inheritance of chromatin modifications with impacts on heredity called |
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What is X chromosome Inactivation |
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females will randomly turn off one of their X's off permanently
- happens when embryo is more than one cell but not that many
-which X is truned off is random in EACH cell (mom vs dad |
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any change in the DNA sequence of a gene |
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What is the rout to evolution and gain of function |
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Where do somatic mutations occur and are they inherited |
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- somatic tissues (tissue that builds the body)
- no inherited
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Where do germline mutations occur and are they inherited |
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- in reproductive cells
-can be inherited |
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What is a dominant mutation |
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what is a recessive mutation |
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What are the three distinction is Point mutations |
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- silent mutations
- Missense mutaiton
- nonsense mutation
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what are the two types of mutations |
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point mutations and regional mutations |
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Term
what is a silent mutation |
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Definition
- nucleotide sequence changes however due to redundancy in the genetic code, the amino acid coded for remains the same
- have no effect on the protein level and are only really found if someone is sequencing DNA
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What is a Missense mutation |
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the nucleotide sequence changes does change the amino acid sequence
-causes changes in protein level that will very in severity
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hat is a nonsense mutation |
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Definition
the nucleotide sequence changes and goes from coding for an amino acid to a stop codon
- cause the protein to be shorter in length
- how far into the coding sequence will affect how great the effect ison the protein itself |
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where the ribosomes only read in increments of three nucleotides
- doesn't interpret what it is translating, just plugs in matching tRNA |
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if you insert or delete in increments that are not divisible by 3 |
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frameshifts can have huge effects because |
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Definition
it can cause a stop Condon to be introduced early
- or it can lose a stop condone entirely and the protein continues on for much longer |
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any chemical that causes mutations efficiently |
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what are examples of mutagens |
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- pathogenic toxins
- UV light
- industrial chemicals
- x-rays
- tobacco smoke and nicotine
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How does UV create a mutation |
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Definition
if there are two thymine's next to each other, the UV creates a double bond between them to form a thymidine dimer
- causes distortion of the DNA so when cell tries to replicate DNA, the two thymine's get jumped over causing a frameshift |
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examples of phenotypes caused by point mutations |
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Definition
- color blindness
- cystic fibrosis
- sickle cell disease
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example of problematic frameshift in humans is an |
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indel in the BRCA1 and 2 genes that lead to the development of breast cancer |
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