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BCT RNA Processing
RNA Processing Learning Objectives
8
Biochemistry
Professional
11/03/2013

Additional Biochemistry Flashcards

 


 

Cards

Term
Relationship of hnRNA to mRNA
Definition
[image]
Term
4 major processing steps most affecting Eukaryotic mRNAs
Definition
-5' end capping
-3' end polyadenylation
-Intron Splicing
-Cap and Internal Nucleotide Methylation
 
-Correct capping, polyadenylation, and splicing are required for mRNA to be exported from the nucleus
Term
Differences between Prokaryotic and Eukaryotic mRNA 5' and 3' ends
Definition

Eukaryotic

-5' cap is modified Guanine Nucleotide

-3' is poly(A) tail (~250)

 

Prokaryotic

-5' is triphosphate

-3' is also polyadenylated, but much shorter (~15-60)

Term
Structure of the 5' cap
Definition
[image]
Term

Intron Splicing


What are the chemical steps?

What are the absolute requirements?

What is the major (unusual) feature of this process?

 

Definition

-Intron splicing is precise removal of intron sequences from primar hnRNA transcript

 

-Chemical steps are transesterifications


-Requires snRNPs"GU" at 5' end/"AG" at 3' end, and "A" at lariat attachment point


-Formation of intron lariat, and unusual 5'-2' bond

Term

mRNA polyadenylation

What are the 3 steps?

What are the requirements?

Definition

1. Recognition of correct polyadenylation site

2. Cleavage of pre-mRNA at correct site, leaving 3' hydroxyl group

3. Addition of ~250 adenosine residues

 

Requires upstream sequence element "AAUAAA" w/in 12-35 nucleotides of cleavage site ("polyadenylation signal")

 

Requires downstream sequence element "U-rich" or "GU-rich" sequence ~10-24nt downstream of cleavage site

 

Term
Changes in splicing lead to changes in the protein encoded by an mRNA
Definition
[image]
Term
Changes in polyadenylation can lead to changes in the protein encoded by an mRNA
Definition
[image]
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