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Attributes to Living Systems
freshman biology
124
Biology
Undergraduate 1
09/06/2006

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Term
If you start with a liquid with a pH of 3 and add water (pH of 7) what will be the resulting pH?
Definition
Near 3
Term
Element
Definition
makes up matter; a substance that cannot be broken down into other substances by chemical reaction.
Term
Compound
Definition
substances of at least two different elements.

Ex: NaCl
Term
Essential elements?
Definition
Carbon, oxygen, hydrogen, and nitrogen make up 96% of living matter
Term
Trace elements
Definition
Minute quanities of elements that oranisms require. Includes: phosphorus, sulfur, calcium, and potassium
Term
Atom
Definition
Smallest unit of matter still retaining element properties, composed of subatomic particles.
Term
Neutron
Definition
Along with protons, this neautral charged subatomic particle make up an atom's nucleus.
Term
Proton
Definition
Along with the neutron, this positively charged particles makes up a nucleus and decides the atomic number.
Term
Electron
Definition
Negitively charged particle than moves around an atom's nucleus at the speed of light.
Term
dalton
Definition
unit of measurementfor atoms and subatomic particles. Equals the mass of neutons plus protons.

1 dalton = 1.7 x 10^-24 grams
Term
Atomic number
Definition
The number of protons in an atom.

Ex. Helium has 2 protons, thus has the atomic number of 2.
Term
Mass number
Definition
The sum of all protons plus neutrons in the nucleus.

Ex: Sodium (Na) has 11 protons and 12 neutrons, thus a mass number of 23.
Term
Atomic Mass
Definition
The approximate total mass of an atom.

Ex:The mass number of sodium (Na) is 23, so the atomic mass is about 23 daltons
Term
Isotope
Definition
Atoms with different numbers of neutrons, which makes different masses.

Ex: Carbon- 12 (has 6 neutrons) or carbon- 13 (has 7 neutrons)
Term
Radioactive isotope
Definition
the nucleus of an atom decays spontaneously, giving off particles and energy.

(diagnostic tool, moniter biological process (fossils))
Term
Energy
Definition
Capacity to cause change (work)
Term
Potential energy
Definition
the energy matter posses due to location or structure.

Ex: Water in a hill reservoir or a stretched rubber band
Term
Orbital
Definition
the three dimensional space where electrons can be found 90% of the time
Term
Shell configuration
Definition
First shell can hold 2 electrons.

All other shells after can hold 8 electrons

To find total number of electrons:
Shell # squared times 2.
4^2= 16 * 2 = 32 electrons in fourth shell.
Term
Chemical bond
Definition
Atoms share an electrons and therefore a valence shell.
Term
Covalent bond
Definition
Two atoms share valence electrons
Term
Molecule
Definition
Two or more atoms held together by covalent bonding
Term
Single bond
Definition
A pair or shared electrons.

Ex: H-H
Term
Double bond
Definition
Atoms which share two pairs of valence electrons.

Ex: O=O
Term
Electronegativity
Definition
The more electronegitive an atom is, the more strongly it pulls other electrons.

As atomic radius increases (more right on the periodic table), ionization energy increases, electronegativity increases.
Term
Non-polar covalent bond
Definition
Both atoms have equal electronegativity
Term
Polar covalent bond
Definition
When one atom is more electronegative, the electrons are not shared equally
Term
Ionic bond
Definition
Chemical bond formed from the attraction between oppositely charged ions.

Only occurs when one atoms is so much more electronegative that it strips the electrons from another atom
Term
Ionic Compounds
Definition
Compounds formed by ionic bonds. Salts! These have weak chemical bonds.

Ex: NaCl (table salt)
Term
Hydrogen Bond
Definition
The weakest bond, forms when a hydrogen atom covalently to an electronegative atom.

Ex: H20
Term
Van der Waals interactions
Definition
Molecules with nonpolar covalent bond may have positive and negative regions. Since electrons accumulate in one area, the atom has ever-changing areas of "hot spots"
Term
Chemical Equilibrium
Definition
Point where chemical reactions are offset exactly.
Term
Cohesion
Definition
Because water has weak hydrogen bonds, the molecules are constantly breaking and reforming.
Term
Adhesion
Definition
The clinging one one substance to another.

Ex: In plants, water clings to cell walls.
Term
Surface Tension
Definition
Measure of how difficult it is to stretch and break a liquid's surface.
Term
How does water moderate air temperature?
Definition
Water absorbs heat from warm air and releases it into cool air with little change to its own temp.
Term
Kinetic Energy
Definition
Enery in motion. Anything that moves.
Term
Heat
Definition
Measure of the total amount of kinetic energy from molecular motion
Term
Temperature
Definition
Measure of intensity of heat due to average kinetic energy.
Term
Celcius Scale
Definition
Water freezes at 0 degrees Celcius and boils at 100 degrees Celcius.
The average human body temp. is 37 C.
Room temp. is 20-25 C.
Term
Calorie (cal)
Definition
Amount of heat required to rise the temp. of 1 grams of water 1 deree Celcius.
Term
Kilocalorie (kcal)
Definition
(1000 calories) Amount of heat required to rise 1 kg of water by 1 degree Celcius.

The calories printed on food packages are actually kilocalories
Term
Joule (J)
Definition
1 J = .239 cal

1 cal= 4.184 J
Term
Specific heat
Definition
The amount of heat absorbed or lost for 1 gram of the substance changed to rise 1 degree Celcius
Term
What does specific heat do to water?
Definition
Causes water to stabilize because hydrogen bonds must heat to break, and the heat released forms other bonds. If temp drops, more hydrogen bonds are formed and more heat is released. Think of as why the gulf stays warm at night.


1 cal/g/ C. (Alcohol has .6 cal/g/ C).
Term
Evaporation
Definition
Transformation of a liquid to gas through heat.

Ex: Water on a hot sidewalk
Term
Heat of Vaporization
Definition
The quantity of heat a liquid must absorb for 1 gram to be converted from liquid to gas.

Ex: Water has a high H.O.V. 1 gram of water at room temp takes 580 calories to vaporate. Solar heat absorbed by the sea creates moist air.
Term
Evaporative cooling
Definition
As a liquid evaporates, the surface molecules will remain to cool down. As the hottest molecules leave as a gas, the average temp drops.

Ex: Stable water temp of lakes
Term
Why does ice float?
Definition
Water becomes less dense when froze because the hydrogen bonds are further apart. At a certain temp, the hydroegen bonds crystalline and 1 molucule will bond to four others which leads to expansion.
Term
Solution
Definition
A liquid completely homogenously mixed between 2 or more substances
Term
Solvent
Definition
The disolving agent of a solution.

Ex: Water
Term
Solute
Definition
The dissolved agent of a solution

Ex: Sugar
Term
Aqueous solution
Definition
When water is the solvent of a solution.

Note: Water is NOT a universal solvent or it would dissolve our cells!
Term
Hydration shell
Definition
The sphere of water molecules around a dissolved ion.
Term
Colloid
Definition
Stable suspention of particles (Not completely dissolved).


Ex: Cotton. Lava lamp!
Term
Molecular mass
Definition
the sum of all masses of all atoms in a molecule, used to calculate the number of molecules.

Ex: Sugar is C6H12O6. 1 C=12 dalton, 1 H=1 dalton, 1 0= 16 daltons. Total daltons of sugar is 342 daltons.
Term
Mole (mol)
Definition
Amount of matter that contains as many objects as the number of atoms in exactly 12 grams of 12C.

Avogado's number: 6.02 * 10^23 because this many dalton equal 1 gram.
Term
Molarity
Definition
The number of moles per liter of solution
Term
Hydroxide ion
Definition
Water molecule with a lost proton, makes the charge -1

- OH
Term
Hydrogen ion
Definition
The hydrogen atom in a hydrogen bond shifts, making the hydrogen atom leave an electron behind, so a proton with a +1 charge remains
Term
Acid
Definition
Substance that increases the Hydrogen concentration of a solution.

pH scale: 0 to 6, 1 being the most acidic
Term
Base
Definition
Substance that reduced the hydrogen ion concentration of a substance.

pH scale: 14 to 8, 14 being the most basic
Term
pH
Definition
The measure of hydrogen concentration, equal to -log[H+] and ranges from 0 to 14.

Ex: Water -log^-7= -(-7)= 7
Term
Buffer
Definition
substance that minimizes changes in H+ and OH- concentrations by accepting hydrogen ion excess in solution and donating to depleated . Contains a weak acid and base.

Ex: Buffers keep blood at 7.4. Low as 7 or high as 7.8= death.
Term
Acis precipitation
Definition
Rain water less than 5.6 pH. Caused by sulfor oxides and nitrogen oxide in atmosphere from burning fossil fuels.
Term
If you want to make a .1 liter of 5 molar NaOH, which weighs 40 grams per mole, how much NaOH should you weigh?
Definition
20 grams
Term
What is the advantage of organelles?
Definition
Incompatable processes can be separated.
Term
What cell structures are in all Eukaryotes but not Prokaryotes?
Definition
Nucleus, Golgi apparatus, endoplasmic reticulum
Term
What structures are in animal cells but not plant cells?
Definition
Lysosome, extracellular matrix
Term
What organelles are part of the endomembrane system?
Definition
ER, Golgi, vacuole
Term
In animal cells, what channel can molecules pass through without crossing a membrane?
Definition
Gap junction
Term
What is the life cycle of an excreted animal protein?
Definition
Born in the ER, travels through the ER, Golgi, then through the cell membrane
Term
What does the endoplamic reticulum (ER) do?
Definition
Make protein lipids, modifies protein by adding a sugar group, and packs proteins into lipid vesicles.
Term
What does the Golgi apparatus (in ALL eukaryote cells) do?
Definition
One side receives proteins through veside fusion, modifies the protein by adding sugar or phosphate groups, addresses labels from modification, then ships it to the plasma membrane/ outside/ lysosome (animals) or vacuole (plants)
Term
What does the lysosome (in animal cells) do?
Definition
Breaks down molecules, recycles, stores diseases, digests particles, assists in cell death.
Term
What does the vacuole (in plant cells) do?
Definition
Water storage, cell sturdiness, stores ions/ metabolites, pigments and toxins.
Term
What organelles are included in the endomembrane system?
Definition
Nucleus, ER, golgi, lysosome, vacuole, plasma membrane.
Term
What is peroxisome? (in all eukaryote cells)
Definition
Not apart of the endomembrane system. Its a single membrane, crystalling look, breakdown fats and detoxification
Term
What is the mitochondrion? (in all eukaryotic cells)
Definition
Not part of the endomembrane system. A membrane covers a folded inner membrane (cristae) over the matrix (hols enzymes). The powerhouse of the cell, energy through cell respiration.
Term
What is chloroplast? (ONLY in plants)
Definition
Two membranes cover stacks of granum (made of layered thylakoid) and surrounded by stroma. Absorbs light to produce sugar
Term
What is semi-autonomous and which cells are?
Definition
Mitochondrion and chloroplast. Have their own DNA, make their own proteins, derived from Prokaryotes according to the Endosymbiont theory.
Term
What is the cytoskeleton and what are the types?
Definition
Network of protein fibers throughout the cell for support and movement.
Microtubles, microfilaments, and intermediate filaments.
Term
What is a microtubule?
Definition
Thick, straught, hollow, tubulin fibers. Motor molecules attatch to provide movement. Offers cell support, makes spindle during cell division, movement by flagella or cilia,
Term
What are microfilaments?
Definition
Thin, solid roda made of actin for the cytoskeleton. Temporary structure, contraction (like cell division or muscle movement) uses myosin.
Term
What are intermediate filaments?
Definition
Solid rods of variable diameter made of keratin for the cytoskeleton. Permenant structure, maintains cell shape.
Term
What are contact points in plant cells?
Definition
Plasmodesmata- a space between plasma membranes.
Term
What are contact points in animal cells?
Definition
Tight juntions- hold cells together, no fluid transport, keeps foreign compounds out.
Desmosome- Hold cells together, fluid transport is possible, achors cells together.
Gap junctions- Cytoplasmic connections, moleculoa transport, similar to plasmodesmata in plant cells.
Term
What are special qualities of water.
Definition
Cohesive due to hydrogen bonds. High specific heat (a lot of heat needed to change temperature). High surface tension (hydrogen bonds hold molecules together). Highest density is at 4 degrees celcius (allows it to float in crystalline form)
Term
What is a structural isomer?
Definition
Isomers with different arangements of atoms. As the size of carbon increases, the number of possible isomers increase.
Term
What is a geometric isomer?
Definition
Same covalent partnerships, different special arrangement. This is made from an inflexable double bond, so it cant rotate freely.
Ex: "X" is on the same side of a double bonded carbon (cis), or cross side (trans).
Term
What is an enantiomer?
Definition
Molecule that mirror one another. The middle carbon is the asymetric carbon.
Term
What is ATP?
Definition
Adenosine triphosphate, the primary enery transferring molecule. Can split off to make diphosphate (ADP).
Term
YOu want to make a .5 liter of a .2 molar glucose (Mw= 180 grams). How much glucose will you weigh out?
Definition
180 g/ mole * .5 L *.2 mole/ L= 18 grams.
Term
What is the advantage of carbon as a building block?
Definition
Carbon is tetravalent and make make 4 bonds.
Term
What is a carbonyl group?
Definition
Functional group present in aldehydes (if at the end of the molecule) and ketones (if in the middle of a molecule), consisting of a carbon double bonded to oxyen.
Term
What is a carboxyl group?
Definition
Group in organic acids, consists of a carbom atom double bonded to an oxygen and bonded to a hydroxyl group.
Term
What is an amino group?
Definition
basic Amines that pick up protons. Consists of a nitrogen bonded to 2 hydrogens. Can act as a base, accepting hydrogen and making a +1 charge.
Term
What is a sulfhydryl group?
Definition
Thiols, a sulfur bonded to a hydrogen.
Term
What is a methyl group?
Definition
(Difference between male an female) Ex: -CH(3)
Term
What is a nucleic acid?
Definition
The stucture of a polymer of nucleotides (5 carbon sugar + phosphate group + amino base)
Term
What are the phrimdines?
Definition
Cystosine (C), thymine (in DNA- T), and Uracin (in RNA- U)
Term
What are the purines?
Definition
Adenine (A) and Guanine (G)
Term
What is a condensation reaction?
Definition
Monomers connect by a reaction, 2 molecules covalently bond through the loss of a water molecule, also called dehydration reaction.
Term
What is hydrolysis?
Definition
A bond between monomers is broken by the addition of water. The Hydrogen attaches to a monomer, hydroxyl group attaches to another monomer.
Term
What are carbohydrates?
Definition
Sugars and sugar polymers. The simplast is monosaccahride. A disaccaharide is 2 monomers joined by a condensation reaction. Polysaccaharides are many sugars.
Term
What is a monosaccaharide?
Definition
Has a carbonyl group and multiple hydroxyl group. Can be aldose (glocose) or a ketoes (fuctose). 6 carbon chains are hexoses (glucose) 3 carbon chain is triose, 5 carbon is pentose.
Term
How are sugars claffified?
Definition
Size of carbon skeleton, spatial arrangement, or location of carbonyl group.
Term
What is a glycosidic linkage?
Definition
A covalent bond formed by dehydration reaction.
Term
What is starch?
Definition
A storage polusaccaharide in plants stored in plastids by synthesising with hydrolisis. One carbon joins to 4 others at a helical angle. Simplest is amylose (unbranched), amylopectin is 1-6 branch.
Term
What is glycogen?
Definition
Animal storage of starch in liver and muscles, extensive branching, releases through hydrolysis.
Term
How are starches digested?
Definition
Enzymes hydrolysize alpha links, but can't digest beta links.
Term
What is a lipid?
Definition
A hydrophobic molecule made of hydrocarbons.
Term
What is a fat?
Definition
Molecule made of glycerol (an alcohol with 3 hydroxyl carbons) and fatty acids (long carbons chain ending with a barboxyl group). Hydrophobic.
Term
What is a saturated fatty acid?
Definition
Has no double bond between carbons, results in MANY hydrogen. Ex: Butter, animal fat. Solid at room temp.
Term
What is an unsaturated fatty acid?
Definition
One or more double bonds, formed by the removal of hydrogen. Ex: Olive oil, fish fat. Double bond causes kinks, molecules can't pack together so liquid at room temp.
Term
What is a phospholipid?
Definition
Has 2 fatty acids attached to glycerol.The third hydroxyl group joins to a phosphate group. Makes heads loves water and tails hate water, forming a bilayer.
Term
What are steroids?
Definition
Lipids of 4 rings, like cholesterol (an animal cell membrane- sex hormones)
Term
What are proteins?
Definition
%0% or more of cell mass. Speed up chemical reactions, structural support, storage, transport, communication, movement and defense.
Term
What are the types of proteins?
Definition
Structural (support- collagen), storage (ovalbumin in egg whites), transportation (hemoglobin), hormonal (corodinates organism's activites- insulin), contractive (movement- actin and myosin) and defense (antibodies).
Term
What are polypedtides?
Definition
Polymers of amino acids. Protein is made of 1 or more polypedtides in a coil.
Term
What is a peptide bond?
Definition
Carboxyl of 1 amino acid is adjacent to the amino acids of another carboxyl. A enzymes cause the carboxyls to join by dehydration, creating a covalent bond.
Term
What are types of nucleic acids?
Definition
DNA (deoxynucleic acid) and RNA (ribonucleic acid)
Term
What is DNA?
Definition
Double helix held together by hydrogen bonds. Has A...T (2 hydrogen bonds), and G...C (3 hydrogen bonds). DNA carries genetic information, directs RNA synthesis, which directs protein synthesis.
Term
What is RNA?
Definition
Similar to DNA, but only a sigle strand of amino acid. Directs protein synthesis.
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