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Archaea and Bacteria
N/A
134
Microbiology
Undergraduate 3
11/11/2009

Additional Microbiology Flashcards

 


 

Cards

Term
Three domains?
Definition
Bacteria, Archaea, and Eukarya
Term

Which phylum has these characteristics?

 1. Thermophilic

2. Sulfur and acid-loving

3. G(-)

4. Ex. Sulfolobus

Definition
Crenarchaeota
Term

Which phylum has these characteristics?

 1. Thermophilic

2. Methane and salt-loving

3. G(+)

4. Ex. Halobacterium

Definition
Euryarchaeota
Term
The phyla Crenarchaeota and Euryarchaeota are sometimes referred to as ________________.
Definition
Extremophiles
Term

These are characteristic of which class of proteobacteria?

1. Grow at low leverls of nutrients

2. Some have unusual morphologies that include stalks or buds

3. Some are nitrogen-fixers

4. Many grow in aquatic environments

Definition
alpha-proteobacteria
Term

These are characteristic of which class of proteobacteria?

1. Some overlap with the alpha-proteobacteria

2. Some are nitrogen-fixers

Definition
beta-proteobacteria
Term

These are characteristic of which class of proteobacteria?

1. Largest and most diverse class of proteobacteria

2. One of the largest prokaryotic organisms, Thiomargarita, is found in this class.

Definition
gamma-proteobacteria
Term

These are characteristic of which class of proteobacteria?

1. Contains many organisms that are important to the sulfur cycle

2. Contains many bacterial predators

Definition
delta-proteobacteria
Term

These are characteristic of which class of proteobacteria?

1. Smallest class of proteobacteria

2. Members helical or vibriod

3. Both groups are motile and microaerophilic

Definition
epsilon-proteobacteria
Term
Which phylum is composed primarily of G(-), chemoheterotrophic bacteria that are thought to have risen from a common photosynthetic ancestor?
Definition
Proteobacteria
Term

-Thought to be the most abundant organism on the planet

-Found in the ocean

-Discovered by FISH from Sargasso Sea

-Alpha-proteobacteria

Definition
Pelagibacter
Term

-Lives in soil.

-Nitrogen fixer.

-Associated with roots of tropical grasses.

-Do not invade tissues of plants.

-Alpha-proteobacteria

Definition
Azospirillum
Term

-Producers of acetic acid

-Alpha-proteobacteria

Definition
Acetobacter & Gluconobacter
Term

-Formerly grouped with Chlamydia and Coxiella

-Alpha-proteobacteria

-all are obligate intracellular parasites

-Tick, flea, or louse born

-Responsible for RMSF

-G(-)

-Rod or coccobacilli shaped

Definition
Rickettsia
Term

-Symbionts of insects and other invertebrates

-Alpha-proteobacteria

-Can influence or determine sex of infected organisms

-Could be most infectious group on the planet

Definition
Wolbachia
Term

-Nitrogen fixer

-found in root nodules of legumes

-improves growth of plants

-Alpha-proteobacteria

Definition
Rhizobium
Term

-Causes 'cancer' in plants

-Alpha-proteobacteria

Definition
Agrobacterium
Term

-Important bacteria in N cycle

-One is alpha, one is Beta

Definition
Nitrobacter(alpha), nitrosomonas (beta)
Term

-Causes 'cat scratch fever'

-Alpha-proteobacteria

Definition
Bartonella
Term

-Coccobacillus

-parasites of mammals

-Causes Brucellosis, or 'Bangs'

-Potential bio-terrorism agent

-Alpha-proteobacteria

-Causes abortions in farm animals

-transmitted to humans in milk from infected animals

-causes lethargy in humans ('college student syndrome')

Definition
Brucella
Term

-Important in sulfur and iron cycles

-Beta-proteobacteria

Definition
Thiobacullus
Term

-Important in sewage treatment but can cause bulking

-Beta-proteobacteria

Definition
Sphaerotilus
Term

-Important in the aerobic part of sewage treatment

-Beta-proteobacteria

Definition
Zooglea
Term

-spiral organisms, but not grouped with spirochaetes because they have true flagella instead of axial filaments

-can contain disease-causing organisms

-Beta-proteobacteria

Definition
Spirillum
Term

-formerly classified in the genus Pseudomonas

-G(-) rod

-the Cepacia species is an important pathogen as it disintegrates pectin and causes 'soft rot'

-causes nosocomial infections

-Beta-proteobacteria

Definition
Burkholderia
Term
Major groups of organisms that are responsible for the majority of nosocomial infections?
Definition
Burkholderia, Pseudomonas, Staphylococcus, Escherichia (gram negative and in the gamma-proteobacteria), Enterococcus (not Beta-proteobacteria)
Term
Major groups of organisms that are responsible for the majority of nosocomial infections?
Definition
Burkholderia, Pseudomonas, Staphylococcus, Escherichia (gram negative and in the gamma-proteobacteria), Enterococcus (not Beta-proteobacteria)
Term

-One causes a fruity smell and green pus

-both cause problems with lung infections and reside on plants, which is why it is a bad idea to send hospital patients potted plants

 

Definition
Burkholderia and Pseudomonas (fruity smell)
Term

-G(-) rod

-causes whooping cough

-can be prevented with the DTP immunization

-Beta-proteobacteria

Definition
Bordetella Pertussis
Term

-inhabit mucous membranes of mammals

-two species, Gonorrhoeae and meningitides

-aerobic G(-) diplococcus

-Beta-proteobacteria

Definition
Neisseria
Term

-also called The Drip, Clap, etc.

-most are drug-resistant

-can cause sterility, PID, and generalized fatal disease in women before symptoms show up

Definition
Gonorrhea
Term

-Gamma-proteobacteria

-one of the largest gammas

-is a nitrogen-fixer

-useful for cleaning up oil spills

-Aeruginosa causes nosocomial infections

-ubiquitous in soil, water, air

-reason why not to send plants to people in hospital

 

Definition
Pseudomonas
Term

-species of Pseudomonas

-responsible for keeping the ski industry afloat due to water freezing properties

-

Definition
syringae
Term

-two species of Pseudomonas

-nitrogen-fixers

 

Definition
Azotobacter and Azomonas
Term

-causes pink eye

-gamma-proteobacteria

-G(-) coccobacillus

Definition
Moraxella
Term

-possibly a plant pathogen

-has antibiotic resistance

-new major concern in nosocomial infections

-gamma-proteobacteria

Definition
Acinetobacter baumanii
Term

-causes tularemia or "rabbit fever"

-usually diagnosed serologically

-potential bioterrorism agent

-gamma-proteobacteria

Definition
Francisella tularensis
Term

-cause of Legionnaires disease

-not ID'd in 1976

-found in watery environments

-gamma-proteobacteria

Definition
Legionella pneumophilia
Term

-cause of Q fever

-potential bio-terrorism agent

-not spread by insect vector

-gamma-proteobacteria

Definition
Coxiella burnetii
Term

-causes cholera

-introduced into environments by bilge waters of boats, contaminating harbors and shellfish beds

-gamma-proteobacteria

Definition
Vibrio cholerae
Term

-species of Vibrio

-causes mild diarrhea from eating contaminated or improperly prepared shellfish

-gamma

 

Definition
V. parahaemolyticus
Term

-get from bad shellfish

-high rate of morbidity

-painful, blister-type lesions

-naturally-occurring organism

-gamma

Definition
V. vulnificus
Term

-G(-) rod

-called "enterics" since most are found in the intestinal tract

-just group of genuses

Definition
Enterobacteriales
Term
Escherichia, Salmonella, Shigella, Klebsiella, Serratia, Proteus, Yersinia, Erwinia, Enterobacter are all examples of what?
Definition
Enterobacteriales
Term

-many different strains

-normal gut inhabitant

-ex. O157:H7

-gamma

Definition
E. Coli
Term

-most all are pathogens for animals

-most often associated with farm animal products

-chief cause of food poisoning

-not found in healthy gut

-gamma

Definition
Salmonella
Term

-causes bacillary dysentery shigellosis

-found only in humans

-major cause of travellers' diarrhea

-spread by contaminated water after natural disasters

-not found in healthy gut

-gamma

Definition
Shigella
Term

-can have in nose and throat without causing disease

-causes problems in young children and alcoholics

-can cause pneumonia and otitis media

-poor toilet habits get M.O. on hands, hands to mouth, inhale from hands

-gamma

Definition
Klebsiella pneumoniae
Term

-used in mock biological warfare exercises

-produces red pigment

-Gamma

-G(-), stains pink

Definition
Serratia marcescens
Term

-very motile

-can cause problem in wounds where injuries aren't life-threatening

-found in gut

-G(-) rod

Definition
Proteus vulgaris
Term

-formerly named Pasteurella but was renamed

-causes Black Plague, two forms, bubonic (flea bite) and pneumonic (inhalation)

-causes death in 4-7 days (bubonic) or 2-3 (pneumonic) if not treated

Definition
Yersinia pestis
Term

-found in the environment and gut

-only a problem outside the gut

-can cause nosocomial infections

-both Enterobacter species

Definition
E. aerogenes and E. cloacae
Term

-important plant pathogen

-causes soft rot

-caused the potato famine

-gamma

Definition
Erwinia
Term

-humans can get from dog and cat bites

-common animal pathogen

-Pasteurella species

-gamma

 

 

Definition
P. multocida
Term

-can cause pneumonia and inner ear infections

-most important disease is meningitis in children

--Hib immunization available

-req'd childhood immunization

-gamma

Definition
Haemophilus influenzae
Term
What two organisms are often confused with each other because of the scabs they both cause?
Definition
Syphilis (hard scab) and H. ducreyi (soft scab)
Term

-G(-), attacks other G(-) organisms

-uses long flagellum to "spear" potential host cells, then drops of flagellum, consumes cell contents, develops more cells which are released

-Delta-proteobacteria

-thought could use to treat Salmonella and Escherichia, but can't

Definition
Bdellovibrio
Term

-has food-poisoning type symptoms

-carried by chickens

-problem with kids in daycare

-Epsilon-proteobacteria

Definition
Campylobacter jejuni
Term

-Epsilon-proteobacteria

-causes spontaneous abortion in animals

Definition
Campylobacter fetus
Term

-causes peptic ulcers in humans

-also linked to stomach cancer

-Marshal drank culture, got ulcers, then recovered

-thought carried by chickens, but not documented

-Epsilon-proteobacteria

Definition
Helicobacter pylori
Term
All nonproteobacteria are ______________.
Definition
Gram-negative
Term
Cyanobacteria, spirochetes, Chlamydia, Becteroides, and the Fusobacterium are all members of which group?
Definition
Nonproteobacteria
Term

-floating organisms in fresh or saltwater

-resemble archaea and eukaryotic cells

ex. Gemmata

 

Definition
Planctomycetes
Term

-phylum once considered part of Rickettsia

-STD

-person-to-person contact required

-unusual life cycle

 

Definition
Chlamydiae
Term
What are the three body forms of Chlamydiae and what do they show?
Definition

Elementary - infective form

-Reticulate - inside the cell which replicates the organism

-Intermediate - transition between elementay and reticulate

Term
Three examples of Chlamydiae?
Definition
C. Trachomatis, C. Psittaci, C. Pneumoniae
Term
What is considered the #1 STD?
Definition
Chlamydiae trachomatis
Term
How is C. trachomatis diagnosed and why?
Definition
using serology; because it is an obligate intracellular parasite
Term

-primarily infects birds

-reason birds are quarantined when being imported

-causes psittacosis

-non-proteobacteria

Definition
Chlamydophila psittaci
Term

-recently discovered cause of a pneumonia

-associated with heart disease

-non-proteobacteria

Definition
Chlamydophila pneumoniae
Term

-motile by axial filaments instead of true flagella

-many harmless aquatic forms, but also several plant pathogens

-primary, secondary, and tertiary stages

-group

Definition
Spirochaetes
Term

-causes relapsing fever in outdoors-people

-causes waves of fever

-number of cycles indicates whether from tick or louse

-non-proteobacteria

 

Definition
Borrelia
Term

-causes Lyme disease

-Species of Borrelia

-characteristic 'bulls eye lesion'

-tick bite

-non-proteobacteria

Definition
B. burgdorferi
Term

-major problem in Viet Nam soldiers

-rats are carriers, but can also get from dogs

-non-proteobacteria

Definition
Leptospira
Term

-strictly anaerobic

-important gut inhabitant

-can cause severe problems if gut is opened

-results in peritonitis

-non-proteobacteria

Definition
Bacteroides, Prevotella
Term

-in dental abcesses

-rods with pointed ends

-obligate anaerobes

-non-proteobacteria

Definition
Fusobacterium
Term

-Phylum Firmicutes

-give "fried egg" colony on culture media

-lack cell walls

-treat with tetracyclines

-G(+)

Definition
Mycoplasma
Term

-obligate anaerobic spore-forming rods

-spore-forming

-three most common organisms:

tetani, botulinum, perfringens (gangrene)

-G(+)

-Phylum Firmicutes

Definition
Clostridium
Term

-disease caused by powerful neurotoxins

-result of dirty wound, most often inoculated by rusty nail

-G(+)

-Phylum Firmicutes

 

Definition
Clostridium tetani
Term

-food poisoning caused by improperly processed food

-shown some cases of SIDS

-strains designated by a, b, c, d, etc.

-G(+)

-Phylum Firmicutes

 

Definition
Clostridium botulinum
Term

-one group of Clostridia causes gas gangrene

-not associated with neurotoxins

-may destroy circulatory capabilities at wound site

-G(+)

-Phylum Firmicutes

Definition
Clostridium perfringens
Term

-nosocomial

-G(+)

-Clostridium species

-Nicknamed "C-diff"

-Phylum Firmicutes

Definition
C. difficile
Term

-obligate anaerobe

-Stains G(-), but genetically is G(+)

-does not cause any disease

-diplococcus

-only in women

-Phylum Firmicutes

Definition
Veillonella
Term
Is Bacillus G(+) or (-)?
Definition
(+)
Term

-causes "Chinese food poisoning"

-endospores in rice, consumed, cause either vomiting or diarrhea

-causes high amounts of gas

-G(+)

-Phylum Firmicutes

Definition
Bacillus cereus
Term

-causes encephalitis/meningitis in young children

-major problem in pregnant women

-G(+)

-Phylum Firmicutes

Definition
Listeria - L. monocytogenes
Term

-(G)+, in clumps or clusters

-large group of opportunistic pathogens

-produce coagulase, which causes plasma to clot

-causes lesions

-normal inhabitant of gut and mouth, but causes disease when it leaves those places

-Phylum Firmicutes

Definition
Staphylococcus
Term
Does Staphylococcus prodce an endospore?
Definition
No
Term
____________ produce lactic acid as one of their characteristics.
Definition
Lactobacillales
Term

-associated with food but does not cause disease

-member of vaginal flora, eating yogurt with active cultures can help mantain them

-G(+)

-can initiate growth at low pH

-Phylum Firmicutes

Definition
Lactococcus
Term

-once classified as Streptococcus, now separate genera

-natural inhabitant of gut, can cause problem if it escapes

-nosocomial infection

-G(+)

-Phylum Firmicutes

Definition
Enterococcus faecalis and E. faecium
Term

-G(+) in chains, causes wide variety of diseases, mostly with capsules

-always catalase negative

-classify using blood agar reactions

-Pyrogenes species responsible for 90% of diseases caused by this group

-phylum Firmicutes

Definition
Streptococcus
Term
Puerperal fever, erysipelas, STSS, scarlet fever, and rheumatic fever are all caused by what organisms?
Definition
Streptococci
Term
Necrotizing faciitis is a new "flesh eating bacteria" that is emerging that is an extremely aggressive strain of what organism?
Definition
Streptococcus pyrogenes
Term

-Phylum Actinobacteria

-G(+), acid-fast positive, pleomorphic rod

-aerobic

-can survive several years in dust

-recognized as killing more people than any other infectious agent

Definition
Mycobacterium tuberculosis
Term

-G(+)

-causes leprosy

-infects only man and the nine-banded armadillo

-least infectious of all infectious disease organisms

-two forms, one of skin and one of nervous system

Definition
Mycobacterium leprae
Term

-flesh-devouring bacterium

-destroys the fat layer under the skin causing the overlaying skin to die

-first described in 1948 in Uganda

-new problem in immigrants

-G(+)

Definition
Mycobacterium ulcerans
Term

-causes diphtheria

-G(+) pleomorphic rods

-causes throat lesions

-can be prevented using the DTP

Definition
Corynebacterium diphtheriae
Term

-associated with common acne

-eats oil and grows anaerobically

-G(+)

Definition
Propionibacterium acnes
Term

-highly variable organism

-some G(-), some G(+)

-sometimes referred to "Honeymoon-itis"

-cause of one of the most common forms of vaginitis

Definition
Gardnerella
Term

-filamentous forms of this organism are similar in appearance to fungi

-true prokaryotes

-only a few genera produce disease organisms

-many harvested to be industrially to produce aromas

-G(+)

Definition
Actinomycetes
Term

-major antibiotic genus

-responsible for smells of rain, beach, and earth

-over 500 species have been described

Definition
Streptomyces
Term

-obligate anaerobe causes infections of the face

-difficult to treat

-can cause lung infections

 

Definition
Actinomyces israelii
Term

-aerobic, causes lesions in jaw after tooth extraction

-can move from jaw to brain causing abscesses that are almost impossible to treat

Definition
Nocardia asteroides
Term
T/F: All fungi are eukaryotic.
Definition
True
Term
How is the fungi kingdom divided?
Definition
Into single-celled yeasts, filamentous molds, ans fleshy mushrooms, puffballs, etc.
Term
Molds are a collection of individual filaments called _______.
Definition
Hyphae
Term
The collected mass of hyphae is called a ____________.
Definition
Mycelium
Term
Mycelia can be divided into two forms. What are they?
Definition
Aerial and vegetative. The aerial forms include spores, and the vegetative forms include roots of plants.
Term
Hyphae can be coenocytic, which means what?
Definition
They lack dividing walls.
Term
How are fungi classified?
Definition
By their means of reproduction.
Term
What are the two ways fungi reproduce?
Definition

Asexually by fragmentation, budding, and spore formation.

 

Sexually by the union of two parental nuclei.

Term
Fungi that have sexual and asexual spores are called ______________.
Definition
Teleomorphs
Term
Fungi that have not been shown to have spores are called ____________.
Definition
Anamorphs
Term
7 examples of beneficial fungi?
Definition
Saccharomyces, Aspergillus, Torulopsis, Trichoderma, Taxomyces, Candida, Basidiomycetes
Term
What is an opportunistic infection?
Definition
An infection that takes the opportunity to occur while your immune system is comprimised because of a pre-existing illness.
Term
List habitat, type of mycosis, and category/example of Rhizopus.
Definition
Ubiquitous, Systemic, Opportunistic pathogen (can cause disease)
Term
List habitat, type of mycosis, and category/example of Mucor.
Definition
Ubiquitous, Systemic, opportunistic pathogen (can cause disease if inhaled)
Term
List habitat, type of mycosis, and category/example of Aspergillus.
Definition
Ubiquitous, systemic, opportunistic pathogen ("Farmer's Lung", bread mold)
Term
List habitat, type of mycosis, and category/example of Blastomyces.
Definition
Soil (possibly bird droppings), systemic, inhalation
Term
List habitat, type of mycosis, and category/example of Histoplasma.
Definition
Soil, systemic, inhalation
Term
List habitat, type of mycosis, and category/example of Trichophyton.
Definition
Soil, cutaneous, ringworm
Term
List habitat, type of mycosis, and category/example of Microsporum.
Definition
Soil, cutaneous, ringworm
Term
List habitat, type of mycosis, and category/example of Epidermophyton.
Definition
Soil, cutaneous, ringworm
Term
List habitat, type of mycosis, and category/example of Stachybotrys.
Definition
Soil, Systemic, Opportunistic pathogen
Term
List habitat, type of mycosis, and category/example of Coccidioides immitis.
Definition
Soil, systemic, inhalation
Term
List habitat, type of mycosis, and category/example of Candida albicans.
Definition
Human normal flora; systemic, cutaneous, subcutaneous, mucocutaneous;opportunistic pathogen (yeast infections, thrush)
Term
List habitat, type of mycosis, and category/example of Pneumocystis carinii.
Definition
Ubiquitous, systemic, opportunistic pathogen, AIDS
Term
List habitat, type of mycosis, and category/example of Cryptococcus neoformans.
Definition
Soil, bird droppings; systemic; inhalation
Term
What is the definition of a virus?
Definition
an obligate intracellular parasite whose genome is DNA or RNA that replicates inside living cells using the cell's machinery.
Term
A ________ is a fully functional viral particle capable of infecting its host cell.
Definition
virion
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