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8/18 Cytogenetics
Caganna4 Theme1
37
Biology
Graduate
08/27/2011

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Term
Deletion
Definition
Net loss of material; 46 X,X, del(5) (q13qter)
Term
Translocation
Definition
Exchange of material
Term
Inversion
Definition
Break in two place, dna flips
Term
Trisomy
Definition
3 copies of one chromosome; 47 XY, +21
Term
Monosomy
Definition
1 copy of any chromosome, ex; 45,X
Term
Triploidy
Definition
3 copies of all chromosomes 69, XXX
Term
Aneuploidy
Definition
Change in the number of chromosomes
Term
Miscarriage stats
Definition
- 50% of spontaneous abortions due to chromosomal abnormalities
- 15% of recognized pregnancies end in miscarriage
Term
Metacentric
Definition
Centromere at center
Term
Submetacentric
Definition
Centromere skewed
Term
Acrocentric
Definition
Ribosomal DNA on sattelite attached by stalk to centromere; redundant
Term
P-arm
Definition
P, petite
Term
q-arm
Definition
long arm
Term
Smallest chromosome?
Definition
21!
Term
Reasons to Karyotype
Definition
- Suspected Abnormality
- Multiple congenital anomalies
- Sex differentiation disorder
- Undiagnosed developmental delay
- Hematologic malignancy
- Multiple (>3) miscarriages; stillbirth or early death
- Fertility problems; advanced age
- Family history
Term
Banding stains
Definition
G staining most common, stains AT regions using trypsin and Giemsa; Active areas are more open so are degraded by trypsin thus lighter
Term
Karyoptyping
Definition
Take mitotic cells, extract nucleus, swell in hypo soln, then drop on slide causing it to burst and freeing chromosomes. Line them up and analyze
Term
Patau
Definition
Trisomy 13
44% mortality
Term
Edward's syndrome
Definition
Trysomy 18
Term
Type 1 non-disjunction
Definition
"One of each"; failure of disjunction in 1st meiosis resulting in a trisomic zygote that has both homologs of chromosomes from one parent and one homolog of another
Term
Type 2 non-disjunction
Definition
"2 of a set"; failure of disjunction in 2st meiosis resulting in a trisomic zygote that has 2 copies of the same chromosome from one parent and then one normal contribution from the other
Term
Trisomic rescue
Definition
- early in trisomic individual, one chromosome is kicked out randomly
- results in imprinting issue if the chromosomes retained are from the same parent
Term
Uniparental Disomy
Definition
Meiosis 1 error, have 2 copies of two different homologous chromosomes from the same parent
Term
Uniparental Isodisomy
Definition
"Iso!" Meiosis 2 error; have two copies of the same homolog from one parent, the other parents chromosome is kicked out
Term
Russell Silver Syndrome
Definition
Maternal UPD
Term
Trisomy 21
Definition
Down's syndrome; 80% result from maternal meiosis 1 errors
Term
4p-
Definition
Spartan Helmet syndrome, deletion of p arm of chromosome 4
Term
Digeorge syndrome
Definition
Chromsosomal disorder where part of the q arm of chromosome 22 is deleted.
- Visualized using fish; Digeorge probe missing on marked chromosome (22)
Term
Robertsonian Translocation
Definition
p arms are lost because they are very small so translocation results in just 1 big combo chromosome. Think of two ice cream cones without the ice cream put mouth to mouth. Segregates in 3 differnet assorments of which 2 are unbalanced
Term
Spectral karyotypic
Definition
Different color dyes for different chromosomes
Term
Comparative Genomic Hybridization
Definition
- Cut up patient DNA and Reference and label with dye. Hybridize to micro arraw and scan output. If = expression of that segment then color will be a balanced blend, if there is less patient it will have the reference color and vice versa.
- Eventually replace FISH and karyotyping
- Detect CNV and UPD and Microdel/Microdup
Term
Fragile X
Definition
- When treated with low folate it would break x chromosome
- 5' UTR repeat of CGGCGGCGG; >200 rpts = full mutation
Term
FRAX
Definition
Grandfathers of fragile X kids have FXTAS which causes Tremor, PD, brain atrophy
- Produce excess mRNA
- Occurs in 20-30% of NTMs
Term
PWS
Definition
- Only maternal copy of region 15 so it can be a deletion or UPD
Term
Angelmens
Definition
-Only have paternal copy chromosome 15
Term
Klinefelters
Definition
-XXY
- Also can have RETTS because of XX
- Don't mature
Term
Supermales
Definition
- XYY
- Antisocial and explosive behaviour
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