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115 Lecture 9
Part 4 enzymes
26
Biochemistry
Undergraduate 1
05/13/2013

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Term
anything that can reduce the activity of an enzyme is known as what?
Definition

an enzyme inhibitor

 

these can be other molecules or ions and they are important in the regulation of cellular activity.

 

many common drugs and toxins are enzyme inhibitors

 

inhibitors can be used to investigate enzyme mechanisms

Term

list the 2 types of enzyme inhibitors

 

list the 3 subtypes of inhibitors

Definition

Irreversible & Reversible

 

Competitive: bind active site

Non-competitive: bind not at active site

Uncompetitive: bind the ES complex

Term
what are substrate analogues?
Definition

these are molecules that have a similar shape to the substrate. they can bind the active site but cannot be metabolised by enzymes.

 

However, most inhibitors are not substrate analogues but transition state analogues

Term

describe irreversible inhibition

what kind of bonding does it involve?

Definition

this is when the inhibitor binds permanently to the enzyme through covalent bonding or very high affinity non-covalent binding

 

they react usually with the active site of the enzyme completely inactivating it and are usually toxic to cells as they stop the fucntioning of the enzyme they have bound to.

Term
what are suicide inhibitors. do they directly cease functioning of the enzyme?
Definition
suicude inhibitors look similar to the substrate. when it binds the enzyme it is converted to the inhibitor by the action of the enzyme itself. thus it does not directly cease enzyme functioning but the product it is metabolised to through enzymatic action results in enzyme suicide.
Term

aspirin is a non steroidal anti inflammatory drug (NSAID) and an example of which type of inhibitor?

 

when was aspirin first marketed?

 

how does aspirin work?

Definition

aspirin is an example of an irreversible inhibitor.

 

it was first marketed in 1899

 

it works by blocking Prostoglandin synthesis

 

 

 

Term

which two plants was aspirin originally extracted from?

 

what is aspirin's posh name?

Definition

Salix alba - white willow

Spiraea ulmaria - meadowsweet

 

aspirin = acetylysalicyclic acid or acetylsalicyclate

Term

which response is prostaglandin synthesis involved in?

 

which enzyme is involved in prostaglandin synthesis?

Definition

prostaglandins are involved in the inflammotary response

 

Prostaglandin H2 synthase is involved in prostaglandin synthesis. It is also known as cyclooxygenase

 

Term

how mnay major isoforms of cyclooxygenase are there?

Name these

Definition

2 major isoforms

 

COX 1 & COX 2

 

COX 1 is widespread and constitutive

 

COX 2 is released during inflammatory response

Term
which isoform of cyclooxygenase is released during inflammatory response?
Definition
COX 2
Term
what is the mode of action for aspirin. how does it work?
Definition
it acts as an acetylating agent where an acetyl group is covalently attached to a serine residue in the active site of the COX enzyme.
Term

true or false?

 

structurally related molecules also function as COX inhibitors?

Definition

True

 

eg acetaminophen (paracetamol) Ibuprofen and Naproxen are all structurraly similar to acetylsalicyclic acid (aspirin)

Term
what the pharmacological uses of aspirin in low and normal dosages?
Definition

Low dose - to prevent throbosis

this inhibits COX1 in blood platelets, preventing prostaglandin/thromboxane-mediated aggregation

 

Term
what are the side effects of aspirin?
Definition
Stomach ulcers - this is because prostaglandins prevent acid secretion (COX1)
Term
in competitive inhibition, the enzyme can bind either the .......... or the inhibitor. there is simple ...... for the active site. Inhibition can be overcome by adding more................ Potency of ............ is related to affinity for active site compared to substrate
Definition
Substrate, competition, substrate, inhibitor
Term

methotrexate is a chemotherapy drug and is an example of which type of inhibitor?

 

which key enzyme in folate metabolism became the first target for chemotherapy drugs?

Definition

it is type of a competitive inhibitor

 

Dihydrofolate reductase (DHFR) became the first target for chemotherapy drugs.

Term
in 1948 which folate analogue that inhibits DHFR, was identified as the first chemotherapy drug?
Definition

Aminopterin

 

a few years later methotrexate was produced. it bound more tightly and had better clinical effects

Term
what does inhibition of DHFR do?
Definition

it blocks nucleoside base synthesis and prevents DNA replication. it prevents cell division by inhibiting DNA replication

 

Methotrexate is a major chemotherapy drug for treatment of cancers of the breast, bladder, head and neck

Term
what is pyrimethamine?
Definition

it is an antimalarial DHFR inhibitor that targets DHFR enzyme in mosquitos not humans.

 

 

 

DHFR stands for Dihydrofolate reductase

Term
give an example of a chemotherapy drug that acts as an irreversible inhibitor
Definition

5-Fluorouracil

 

this blocks DNA synthesis by inhibiting the production of pyramidines and purines

 

it has similar applications to methotexate and MTX and 5-FU are often used in combination

Term
5-Fluorouracil is the precursor for which suicide inhibitor?
Definition
thymidylate synthase
Term

which type of inhibitor can bind either the enzyme or the enzyme substrate complex? 

 

 

Hint: this type of inhibitor binds at a site away from the active site

Definition

Non- competitve inhibitor. These do not change Km but affect the rate of catalysis ie. turnover number

 

as these do not affect substrate binding, they cannot be over come by addition of more substrate

 

non-competitive inhibition is rare in nature as most inhibitors that act away form the active site tend to be irreversible inhibitors.

 

the over all affect on kinetics is similar to irreversible inhibition

Term
uncompetitive inhibition occurs when the inhibitor binds which complex?
Definition

the Enzyme-Substrate complex but not free enzyme

 

an example is Lithium as drug treatment for manic depression. It is an inhibitor of myo-inositol monophosphatase

 

 

Term
describe the graph with a competitive inhibitor
Definition
both cross on  y axis
Term
describe the graph for non competitive inhibitors
Definition
both cross on the x axis
Term
describe the graph for uncompetitive inhibitors
Definition
parallel lines
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